{% extends "base_QC.html" %} {% import 'featureDistributionReport.html' as fdPlots %} {% import 'pcaReport.html' as pca %} {% block title %}Assay Summary Report for: {{ item.Name }}{% endblock %} {% block content %}

Final Dataset

{{ item['Nsamples'] }} samples

{{ item['Nfeatures'] }} features

Sample Summary

Sample Summary Table

{{ item['SampleSummaryTable'].to_html() }}

*Details of any missing samples given at the end of the report

PCA scores plots coloured by sample type.

Figure 1. RSDs of measures in reference and biological samples.

{% if featureRanges is not none %} {{ fdPlots.featureDistributionReport(featureRanges) }} {% endif %} {% if pcaPlots is not none %} {{ pca.basicPCAReport(pcaPlots) }} {% endif %}
{% if 'SamplesMissingInfo' in item %}

Samples Missing from Acquisition

{% elif 'SamplesExcludedInfo' in item %}

Samples Missing from Acquisition

{% endif %} {% if 'SamplesMissingInfo' in item %}

Samples unavailable for acquisition

{{ item['SamplesMissingInfo'].to_html() }} {% endif %} {% if 'SamplesExcludedInfo' in item %}

Samples excluded on analytical criteria

{{ item['SamplesExcludedInfo'].to_html() }} {% endif %}
{% endblock %}