13. beta_stacked_barplot.py¶
13.1. Description¶
This program creates stacked barplot for each sample. The stacked barplot showing the proportions of CpGs whose beta values are falling into these 4 ranges: 1. [0.00, 0.25] #first quantile 2. [0.25, 0.50] #second quantile 3. [0.50, 0.75] #third quantile 4. [0.75, 1.00] #forth quantile
Example of input file
CpG_ID Sample_01 Sample_02 Sample_03 Sample_04
cg_001 0.831035 0.878022 0.794427 0.880911
cg_002 0.249544 0.209949 0.234294 0.236680
13.2. Options¶
- --version
show program’s version number and exit
- -h, --help
show this help message and exit
- -i INPUT_FILE, --input-file-INPUT_FILE
Data frame file containing beta values with the 1st row containing sample IDs and the 1st column containing CpG IDs.
- -o OUT_FILE, --output-OUT_FILE
Prefix of the output file.
13.3. Input files (examples)¶
13.4. Command¶
$beta_stacked_barplot.py -i cirrHCV_vs_normal.data.tsv -o stacked_bar