denofo/__init__.py |
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denofo/choices.py |
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100% |
denofo/comparator/__init__.py |
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0 |
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denofo/comparator/comparator_cli.py |
main |
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0 |
100% |
denofo/comparator/comparator_cli.py |
(no function) |
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1 |
0 |
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denofo/comparator/comparator_gui.py |
DNGFCompareGUI.__init__ |
95 |
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0 |
100% |
denofo/comparator/comparator_gui.py |
DNGFCompareGUI.show_help |
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DNGFCompareGUI.update_compare_button |
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DNGFCompareGUI.browse_file |
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3 |
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denofo/comparator/comparator_gui.py |
DNGFCompareGUI.browse_save_file |
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denofo/comparator/comparator_gui.py |
DNGFCompareGUI.compare_files |
24 |
2 |
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92% |
denofo/comparator/comparator_gui.py |
DNGFCompareGUI.closeEvent |
4 |
1 |
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75% |
denofo/comparator/comparator_gui.py |
main |
6 |
6 |
0 |
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denofo/comparator/comparator_gui.py |
(no function) |
19 |
1 |
0 |
95% |
denofo/comparator/compare.py |
_turn_value_to_string |
10 |
0 |
0 |
100% |
denofo/comparator/compare.py |
_get_output_string |
47 |
0 |
0 |
100% |
denofo/comparator/compare.py |
write_comparison |
5 |
0 |
0 |
100% |
denofo/comparator/compare.py |
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0 |
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denofo/converter/__init__.py |
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0 |
0 |
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denofo/converter/convert.py |
convert_to_pickle |
4 |
0 |
0 |
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denofo/converter/convert.py |
load_from_pickle |
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0 |
0 |
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denofo/converter/convert.py |
convert_to_json |
5 |
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0 |
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denofo/converter/convert.py |
load_from_json |
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0 |
0 |
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denofo/converter/convert.py |
load_from_fasta |
13 |
1 |
0 |
92% |
denofo/converter/convert.py |
encode_short_str |
2 |
0 |
0 |
100% |
denofo/converter/convert.py |
decode_short_str |
1 |
0 |
0 |
100% |
denofo/converter/convert.py |
annotate_fasta |
13 |
2 |
0 |
85% |
denofo/converter/convert.py |
annotate_gff |
29 |
9 |
0 |
69% |
denofo/converter/convert.py |
load_from_gff |
20 |
5 |
0 |
75% |
denofo/converter/convert.py |
(no function) |
17 |
0 |
0 |
100% |
denofo/converter/converter_cli.py |
main |
66 |
12 |
0 |
82% |
denofo/converter/converter_cli.py |
(no function) |
9 |
1 |
0 |
89% |
denofo/converter/converter_gui.py |
DngfConverterGUI.__init__ |
119 |
0 |
0 |
100% |
denofo/converter/converter_gui.py |
DngfConverterGUI.show_help |
1 |
1 |
0 |
0% |
denofo/converter/converter_gui.py |
DngfConverterGUI.browse_input |
10 |
10 |
0 |
0% |
denofo/converter/converter_gui.py |
DngfConverterGUI.browse_output |
10 |
10 |
0 |
0% |
denofo/converter/converter_gui.py |
DngfConverterGUI.browse_identifiers |
3 |
3 |
0 |
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denofo/converter/converter_gui.py |
DngfConverterGUI.browse_additional |
3 |
3 |
0 |
0% |
denofo/converter/converter_gui.py |
DngfConverterGUI.on_input_path_changed |
7 |
1 |
0 |
86% |
denofo/converter/converter_gui.py |
DngfConverterGUI.on_output_path_changed |
7 |
1 |
0 |
86% |
denofo/converter/converter_gui.py |
DngfConverterGUI.update_sections |
31 |
10 |
0 |
68% |
denofo/converter/converter_gui.py |
DngfConverterGUI.get_identifiers |
5 |
0 |
0 |
100% |
denofo/converter/converter_gui.py |
DngfConverterGUI.convert |
50 |
32 |
0 |
36% |
denofo/converter/converter_gui.py |
DngfConverterGUI.closeEvent |
4 |
1 |
0 |
75% |
denofo/converter/converter_gui.py |
main |
6 |
6 |
0 |
0% |
denofo/converter/converter_gui.py |
(no function) |
23 |
1 |
0 |
96% |
denofo/models.py |
AnnotGenome.annotGenomeChoice_unknown |
3 |
0 |
0 |
100% |
denofo/models.py |
Transcriptome.transORFChoice_exclude |
8 |
1 |
0 |
88% |
denofo/models.py |
Transcriptome.customGeneticContext_required |
3 |
0 |
0 |
100% |
denofo/models.py |
Transcriptome.customORFChoice_required |
3 |
0 |
0 |
100% |
denofo/models.py |
TaxonID.taxID_valid |
19 |
3 |
0 |
84% |
denofo/models.py |
HomologyFilter.customs_required |
10 |
0 |
0 |
100% |
denofo/models.py |
SyntenySearch.customAnchor_required |
3 |
0 |
0 |
100% |
denofo/models.py |
TranslationalEvidence.customTranslationEvidence_required |
3 |
0 |
0 |
100% |
denofo/models.py |
DeNovoGeneAnnotation.inputDataType_required |
7 |
0 |
0 |
100% |
denofo/models.py |
(no function) |
77 |
0 |
0 |
100% |
denofo/questionnaire/__init__.py |
(no function) |
0 |
0 |
0 |
100% |
denofo/questionnaire/questionnaire_cli.py |
_show_message |
4 |
0 |
0 |
100% |
denofo/questionnaire/questionnaire_cli.py |
valid_input_for_pydmodel |
16 |
0 |
0 |
100% |
denofo/questionnaire/questionnaire_cli.py |
init_colors |
6 |
6 |
0 |
0% |
denofo/questionnaire/questionnaire_cli.py |
enum_choice_selection |
51 |
3 |
0 |
94% |
denofo/questionnaire/questionnaire_cli.py |
get_enum_choice_conversion |
6 |
0 |
0 |
100% |
denofo/questionnaire/questionnaire_cli.py |
custom_entry_insertion |
95 |
0 |
0 |
100% |
denofo/questionnaire/questionnaire_cli.py |
get_custom_entry |
7 |
1 |
0 |
86% |
denofo/questionnaire/questionnaire_cli.py |
yes_or_no |
28 |
0 |
0 |
100% |
denofo/questionnaire/questionnaire_cli.py |
get_yes_no |
2 |
0 |
0 |
100% |
denofo/questionnaire/questionnaire_cli.py |
main |
25 |
25 |
0 |
0% |
denofo/questionnaire/questionnaire_cli.py |
(no function) |
26 |
1 |
0 |
96% |
denofo/questionnaire/questionnaire_gui.py |
clearLayout |
4 |
0 |
0 |
100% |
denofo/questionnaire/questionnaire_gui.py |
QSingleton.__init__ |
2 |
0 |
0 |
100% |
denofo/questionnaire/questionnaire_gui.py |
QSingleton.__call__ |
3 |
0 |
0 |
100% |
denofo/questionnaire/questionnaire_gui.py |
MainWindow.__init__ |
7 |
1 |
0 |
86% |
denofo/questionnaire/questionnaire_gui.py |
MainWindow.center_on_screen |
12 |
3 |
0 |
75% |
denofo/questionnaire/questionnaire_gui.py |
MainWindow.closeEvent |
8 |
5 |
0 |
38% |
denofo/questionnaire/questionnaire_gui.py |
ErrorDialog.__init__ |
4 |
0 |
0 |
100% |
denofo/questionnaire/questionnaire_gui.py |
ErrorDialog.initUI |
13 |
0 |
0 |
100% |
denofo/questionnaire/questionnaire_gui.py |
show_error_message |
9 |
9 |
0 |
0% |
denofo/questionnaire/questionnaire_gui.py |
ProgressBar.__init__ |
3 |
0 |
0 |
100% |
denofo/questionnaire/questionnaire_gui.py |
ProgressBar.initUI |
11 |
0 |
0 |
100% |
denofo/questionnaire/questionnaire_gui.py |
Back_button.__init__ |
3 |
0 |
0 |
100% |
denofo/questionnaire/questionnaire_gui.py |
Back_button.initUI |
3 |
0 |
0 |
100% |
denofo/questionnaire/questionnaire_gui.py |
Back_button.on_click |
2 |
0 |
0 |
100% |
denofo/questionnaire/questionnaire_gui.py |
Enum_choice_selection.__init__ |
7 |
0 |
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100% |
denofo/questionnaire/questionnaire_gui.py |
Enum_choice_selection.initUI |
31 |
2 |
0 |
94% |
denofo/questionnaire/questionnaire_gui.py |
Enum_choice_selection.update_submit_button |
4 |
4 |
0 |
0% |
denofo/questionnaire/questionnaire_gui.py |
Enum_choice_selection.on_submit |
4 |
4 |
0 |
0% |
denofo/questionnaire/questionnaire_gui.py |
Custom_entry.__init__ |
6 |
0 |
0 |
100% |
denofo/questionnaire/questionnaire_gui.py |
Custom_entry.initUI |
37 |
5 |
0 |
86% |
denofo/questionnaire/questionnaire_gui.py |
Custom_entry.connect_signals |
6 |
0 |
0 |
100% |
denofo/questionnaire/questionnaire_gui.py |
Custom_entry.update_submit_button |
4 |
0 |
0 |
100% |
denofo/questionnaire/questionnaire_gui.py |
Custom_entry.on_submit |
10 |
6 |
0 |
40% |
denofo/questionnaire/questionnaire_gui.py |
Custom_entry.add_entry |
7 |
0 |
0 |
100% |
denofo/questionnaire/questionnaire_gui.py |
Custom_entry.remove_entry |
7 |
0 |
0 |
100% |
denofo/questionnaire/questionnaire_gui.py |
Yes_no.__init__ |
5 |
0 |
0 |
100% |
denofo/questionnaire/questionnaire_gui.py |
Yes_no.initUI |
17 |
4 |
0 |
76% |
denofo/questionnaire/questionnaire_gui.py |
Yes_no.on_yes |
2 |
0 |
0 |
100% |
denofo/questionnaire/questionnaire_gui.py |
Yes_no.on_no |
2 |
0 |
0 |
100% |
denofo/questionnaire/questionnaire_gui.py |
get_enum_choice_conversion |
17 |
1 |
0 |
94% |
denofo/questionnaire/questionnaire_gui.py |
get_custom_entry |
17 |
1 |
0 |
94% |
denofo/questionnaire/questionnaire_gui.py |
get_yes_no |
17 |
1 |
0 |
94% |
denofo/questionnaire/questionnaire_gui.py |
valid_input_for_pydmodel |
16 |
4 |
0 |
75% |
denofo/questionnaire/questionnaire_gui.py |
save_annotation |
9 |
9 |
0 |
0% |
denofo/questionnaire/questionnaire_gui.py |
main_app |
9 |
9 |
0 |
0% |
denofo/questionnaire/questionnaire_gui.py |
main |
6 |
6 |
0 |
0% |
denofo/questionnaire/questionnaire_gui.py |
(no function) |
60 |
1 |
0 |
98% |
denofo/questionnaire/questions.py |
DeNovoQuestionnaire.__init__ |
4 |
0 |
0 |
100% |
denofo/questionnaire/questions.py |
DeNovoQuestionnaire.call_last_question |
12 |
0 |
0 |
100% |
denofo/questionnaire/questions.py |
DeNovoQuestionnaire.call_next_question |
9 |
0 |
0 |
100% |
denofo/questionnaire/questions.py |
DeNovoQuestionnaire.q_end |
1 |
0 |
0 |
100% |
denofo/questionnaire/questions.py |
DeNovoQuestionnaire.q6_1 |
5 |
0 |
0 |
100% |
denofo/questionnaire/questions.py |
DeNovoQuestionnaire.q6 |
8 |
0 |
0 |
100% |
denofo/questionnaire/questions.py |
DeNovoQuestionnaire.q5_2 |
5 |
0 |
0 |
100% |
denofo/questionnaire/questions.py |
DeNovoQuestionnaire.q5_1 |
8 |
0 |
0 |
100% |
denofo/questionnaire/questions.py |
DeNovoQuestionnaire.q5 |
8 |
0 |
0 |
100% |
denofo/questionnaire/questions.py |
DeNovoQuestionnaire.q4_1 |
5 |
0 |
0 |
100% |
denofo/questionnaire/questions.py |
DeNovoQuestionnaire.q4 |
8 |
0 |
0 |
100% |
denofo/questionnaire/questions.py |
DeNovoQuestionnaire.q3_3_3 |
5 |
2 |
0 |
60% |
denofo/questionnaire/questions.py |
DeNovoQuestionnaire.q3_3_2 |
8 |
2 |
0 |
75% |
denofo/questionnaire/questions.py |
DeNovoQuestionnaire.q3_3_1 |
5 |
2 |
0 |
60% |
denofo/questionnaire/questions.py |
DeNovoQuestionnaire.q3_3 |
8 |
2 |
0 |
75% |
denofo/questionnaire/questions.py |
DeNovoQuestionnaire.q3_2 |
8 |
2 |
0 |
75% |
denofo/questionnaire/questions.py |
DeNovoQuestionnaire.q3_1 |
5 |
2 |
0 |
60% |
denofo/questionnaire/questions.py |
DeNovoQuestionnaire.q3 |
8 |
2 |
0 |
75% |
denofo/questionnaire/questions.py |
DeNovoQuestionnaire.q2_8 |
5 |
0 |
0 |
100% |
denofo/questionnaire/questions.py |
DeNovoQuestionnaire.q2_7 |
8 |
0 |
0 |
100% |
denofo/questionnaire/questions.py |
DeNovoQuestionnaire.q2_6_1 |
20 |
2 |
0 |
90% |
denofo/questionnaire/questions.py |
DeNovoQuestionnaire.q2_6 |
5 |
2 |
0 |
60% |
denofo/questionnaire/questions.py |
DeNovoQuestionnaire.q2_5_3 |
8 |
0 |
0 |
100% |
denofo/questionnaire/questions.py |
DeNovoQuestionnaire.q2_5_2 |
5 |
0 |
0 |
100% |
denofo/questionnaire/questions.py |
DeNovoQuestionnaire.q2_5_1 |
8 |
0 |
0 |
100% |
denofo/questionnaire/questions.py |
DeNovoQuestionnaire.q2_4 |
5 |
0 |
0 |
100% |
denofo/questionnaire/questions.py |
DeNovoQuestionnaire.q2_3 |
8 |
0 |
0 |
100% |
denofo/questionnaire/questions.py |
DeNovoQuestionnaire.q2_2_1 |
12 |
1 |
0 |
92% |
denofo/questionnaire/questions.py |
DeNovoQuestionnaire.q2_2 |
5 |
0 |
0 |
100% |
denofo/questionnaire/questions.py |
DeNovoQuestionnaire.q2_1 |
8 |
0 |
0 |
100% |
denofo/questionnaire/questions.py |
DeNovoQuestionnaire.q2 |
8 |
0 |
0 |
100% |
denofo/questionnaire/questions.py |
DeNovoQuestionnaire.q1_3 |
5 |
5 |
0 |
0% |
denofo/questionnaire/questions.py |
DeNovoQuestionnaire.q1_2_7 |
9 |
0 |
0 |
100% |
denofo/questionnaire/questions.py |
DeNovoQuestionnaire.q1_2_6 |
11 |
0 |
0 |
100% |
denofo/questionnaire/questions.py |
DeNovoQuestionnaire.q1_2_5 |
5 |
0 |
0 |
100% |
denofo/questionnaire/questions.py |
DeNovoQuestionnaire.q1_2_4 |
13 |
3 |
0 |
77% |
denofo/questionnaire/questions.py |
DeNovoQuestionnaire.q1_2_3 |
5 |
0 |
0 |
100% |
denofo/questionnaire/questions.py |
DeNovoQuestionnaire.q1_2_2 |
8 |
0 |
0 |
100% |
denofo/questionnaire/questions.py |
DeNovoQuestionnaire.q1_2_1 |
10 |
3 |
0 |
70% |
denofo/questionnaire/questions.py |
DeNovoQuestionnaire.q1_2 |
11 |
3 |
0 |
73% |
denofo/questionnaire/questions.py |
DeNovoQuestionnaire.q1_1 |
16 |
3 |
0 |
81% |
denofo/questionnaire/questions.py |
DeNovoQuestionnaire.q1 |
12 |
0 |
0 |
100% |
denofo/questionnaire/questions.py |
DeNovoQuestionnaire.get_DeNovoGeneAnnotation_from_qstack |
16 |
16 |
0 |
0% |
denofo/questionnaire/questions.py |
DeNovoQuestionnaire.start_questionnaire |
4 |
4 |
0 |
0% |
denofo/questionnaire/questions.py |
(no function) |
51 |
0 |
0 |
100% |
denofo/utils/__init__.py |
(no function) |
0 |
0 |
0 |
100% |
denofo/utils/constants.py |
(no function) |
9 |
0 |
0 |
100% |
denofo/utils/helpers.py |
different_answers |
3 |
0 |
0 |
100% |
denofo/utils/helpers.py |
get_model_from_qstack_dict |
5 |
0 |
0 |
100% |
denofo/utils/helpers.py |
add_extension |
3 |
0 |
0 |
100% |
denofo/utils/helpers.py |
infer_format_from_extension |
3 |
0 |
0 |
100% |
denofo/utils/helpers.py |
diff_two_lists |
9 |
0 |
0 |
100% |
denofo/utils/helpers.py |
_merge_thresholds_with_vals |
5 |
1 |
0 |
80% |
denofo/utils/helpers.py |
compare_two_models |
44 |
20 |
0 |
55% |
denofo/utils/helpers.py |
_get_index_from_enum_choice |
5 |
5 |
0 |
0% |
denofo/utils/helpers.py |
get_short_repr |
31 |
16 |
0 |
48% |
denofo/utils/helpers.py |
_process_short_matches |
23 |
11 |
0 |
52% |
denofo/utils/helpers.py |
_get_enum_choices_from_num |
7 |
7 |
0 |
0% |
denofo/utils/helpers.py |
_fill_model_dict |
31 |
21 |
0 |
32% |
denofo/utils/helpers.py |
get_model_from_short_repr |
6 |
0 |
0 |
100% |
denofo/utils/helpers.py |
(no function) |
22 |
0 |
0 |
100% |
denofo/utils/ncbiTaxDBcheck.py |
check_NCBI_taxDB |
7 |
0 |
0 |
100% |
denofo/utils/ncbiTaxDBcheck.py |
update_NCBI_taxDB |
3 |
0 |
0 |
100% |
denofo/utils/ncbiTaxDBcheck.py |
(no function) |
8 |
0 |
0 |
100% |