{% extends "layout.html" %} {% set title = 'SphinxReport' %} {% block body %} CGATReport is a report generator that is implemented as an extension to Sphinx.

Its purpose is to facilitate writing scientific reports interpreting large and changing datasets. It is designed to assist the iterative analysis during the development of a computational scientific pipeline as understanding of the data grows. Once the pipeline settles down, SphinxReport permits an easy transition towards the automatic report generation needed when the pipeline is run on new data sets.

CGATReport is easy to use and powerful enough to give all the flexibility needed during the development of computational pipelines and robustness during the production use of a pipeline. It is intended for developers and computational scientists with python scripting experience.

CGATReport comes with all the batteries included thanks to python and Sphinx, in particular, it

How to get CGATReport

To install CGATReport, simply type:
    pip install CGATReport
The development version of CGATReport is available on Github.

Documentation

Examples

RNA-Seq report - a report generated from the CGAT RNA-Seq analysis pipeline using the data from Yang et. al. 2011. {% endblock %}