Welcome to iTP-Seq’s documentation!¶

Installation¶

The code for itpseq is available on GitHub under an GPL-3.0 open source license.

The itpseq module and its command line tools can be installed from PyPI using the pip package manager by running the following command:

pip install itpseq

Resources¶

  • Tutorials
    • Generating a report
    • Manually creating custom graphs
    • Creating graphs and tables
    • Interactive virtual inverse toeprint
  • API
    • Dataset objects
    • Detailed API
      • DataSet
        • DataSet.data_path
        • DataSet.result_path
        • DataSet.samples
        • DataSet.keys
        • DataSet.ref_labels
        • DataSet.cache_path
        • DataSet.file_pattern
        • DataSet.aafile_pattern
        • DataSet.DE()
        • DataSet.infos()
      • Replicate
        • Replicate.filename
        • Replicate.sample
        • Replicate.replicate
        • Replicate.labels
        • Replicate.name
        • Replicate.dataset
        • Replicate.kwargs
        • Replicate.logo()
      • Sample
        • Sample.get_counts_ratio_pos()
        • Sample.hmap()
        • Sample.hmap_grid()
        • Sample.hmap_pos()
        • Sample.itp_len_plot()
        • Sample.itp_len

Indices and tables¶

  • Index

  • Module Index

  • Search Page

iTP-Seq

Navigation

  • Tutorials
  • API

Related Topics

  • Documentation overview
    • Next: Tutorials
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