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rxncon is a framework to build, visualise and model cellular signal transduction networks. The rxncon language enables the description of these networks. The rxncon software tool interprets the rxncon language and automates export into a range of graphical and mathematical formats. The purpose of rxncon is to provide a framework to collect, visualise and model experimental data on cellular networks. In the rxncon framework, cellular signal transduction networks are described at the same granularity as empirical data. The key feature is strict separation of elemental reactions from contingencies. Elemental reactions are generic reactions, and the contingencies define contextual constraints these reactions. This separation minimises the combinatorial complexity. The user defines the network as one reaction list and one contingency list. From these data mathematical and graphical representation can be generated. The network can be modified and extended iteratively, and both visualisation and mathematical models can be generated automatically at any time.
Welcome to the quick tutorial for the rxncon web framework!
This software runs locally on your computer.
This is the list of your projects.
You can create projects from .xls files in the rxncon format...
... or from direct text input.
This brings you to the detail view of your project.
Once created, you can load a system into your workspace.
Here you see which project is loaded. Loaded Systems also appear green in the left sidebar or the projects detail view.
Once loaded, you can run visualisation or simulation tools.
For further instructions check out the tutorials.