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Index

B | C | D | E | G | H | I | M | O | P | R | S

B

build_matrix_row() (in module SeqFindr.seqfindr)

C

check_database() (in module SeqFindr.util)
cluster_matrix() (in module SeqFindr.seqfindr)
core() (in module SeqFindr.seqfindr)

D

do_run() (in module SeqFindr.seqfindr)
dump_items() (SeqFindr.config.SeqFindrConfig method)

E

ensure_paths_for_args() (in module SeqFindr.util)

G

generate_colors() (in module SeqFindr.imaging)
get_fasta_files() (in module SeqFindr.util)

H

hsv_to_rgb() (in module SeqFindr.imaging)

I

init_output_dirs() (in module SeqFindr.util)
is_protein() (in module SeqFindr.util)

M

main() (in module SeqFindr.vfdb_to_seqfindr)
make_BLAST_database() (in module SeqFindr.blast)
match_matrix_rows() (in module SeqFindr.seqfindr)

O

order_by_class() (in module SeqFindr.vfdb_to_seqfindr)
order_inputs() (in module SeqFindr.util)

P

parse_BLAST() (in module SeqFindr.blast)
plot_matrix() (in module SeqFindr.seqfindr)
prepare_queries() (in module SeqFindr.seqfindr)

R

read_config() (in module SeqFindr.config)
run_BLAST() (in module SeqFindr.blast)

S

SeqFindr (module)
SeqFindr.blast (module)
SeqFindr.config (module)
SeqFindr.imaging (module)
SeqFindr.seqfindr (module)
SeqFindr.util (module)
SeqFindr.vfdb_to_seqfindr (module)
SeqFindrConfig (class in SeqFindr.config)
strip_bases() (in module SeqFindr.seqfindr)
strip_id_from_matrix() (in module SeqFindr.seqfindr)

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