README

Virtual Microbes Evolutionary Simulator

Features

  • Individual based model of evolving microbes.
  • Explicit model of evolving genome.
  • Spatially extended environment.
  • Microbes evolve metabolic capacities to exploit environmental nutrients.

Dependencies and scripts

Install

pip install VirtualMicrobes

Usage

can’t wait to simulate:

vermicelli.py evo <simulation_dir>

open pandora’s box of options:

  • vermicelli.py --help
  • vermicelli.py evo --help