All modules for which code is available
- VirtualMicrobes.Tree.PhyloTree
- VirtualMicrobes.cython_gsl_interface.integrate
- VirtualMicrobes.cython_gsl_interface.odes
- VirtualMicrobes.data_tools.store
- VirtualMicrobes.environment.Environment
- VirtualMicrobes.environment.Grid
- VirtualMicrobes.event.Molecule
- VirtualMicrobes.event.Reaction
- VirtualMicrobes.mutate.Mutation
- VirtualMicrobes.mutate.test.TestMutate
- VirtualMicrobes.my_tools.analysis_tools
- VirtualMicrobes.my_tools.monkey
- VirtualMicrobes.my_tools.utility
- VirtualMicrobes.plotting.Graphs
- VirtualMicrobes.post_analysis.lod
- VirtualMicrobes.post_analysis.network_funcs
- VirtualMicrobes.post_analysis.network_properties
- VirtualMicrobes.simulation.Simulation
- VirtualMicrobes.simulation.continue
- VirtualMicrobes.simulation.start
- VirtualMicrobes.simulation.start_multi
- VirtualMicrobes.virtual_cell.Cell
- VirtualMicrobes.virtual_cell.Chromosome
- VirtualMicrobes.virtual_cell.Gene
- VirtualMicrobes.virtual_cell.Genome
- VirtualMicrobes.virtual_cell.GenomicElement
- VirtualMicrobes.virtual_cell.Identifier
- VirtualMicrobes.virtual_cell.PhyloUnit
- VirtualMicrobes.virtual_cell.Population
- VirtualMicrobes.virtual_cell.Sequence
- collections
- matplotlib.artist
- matplotlib.figure
- matplotlib.transforms