Kinetics¶
Apps¶
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iocbio.kinetics.app.gui.
handle_schema_changes
(database, version)[source]¶ Handles changes in schema induced by updates. Returns true if successful
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iocbio.kinetics.app.banova.
analyze_dict
(data, keys=None, sample_id=None, value=None, nullmodel=None, plot=None)[source]¶ Analyze by BANOVA dataset in the form of dictionary with list of vectors
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iocbio.kinetics.app.banova.
analyze_r
(robj)[source]¶ Analyze BANOVA results as obtained in R
As an input, use result from anovaBF
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iocbio.kinetics.app.banova.
analyze_rows
(rdict, keys=None, sample_id=None, value=None, nullmodel=None, plot=None)[source]¶ Analyze by BANOVA dataset in the form of iterative of dictionaries, like returned by DictReader, and records SQL query
codes¶
Calc¶
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class
iocbio.kinetics.calc.mean_med_std.
AnalyzerMeanMedStd
(x, y)[source]¶ Analyzer finding mean, median, and std
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class
iocbio.kinetics.calc.generic.
Stats
(human, unit, value)¶ -
human
¶ Alias for field number 0
-
unit
¶ Alias for field number 1
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value
¶ Alias for field number 2
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-
class
iocbio.kinetics.calc.generic.
XYData
(x, y)¶ -
x
¶ Alias for field number 0
-
y
¶ Alias for field number 1
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-
class
iocbio.kinetics.calc.explin_fit.
AnalyzerExpLinFit
(x, y)[source]¶ Analyser for exponential + linear fitting
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class
iocbio.kinetics.calc.current.
AnalyzerCurrent
(x, y, baseline_subtraction=True)[source]¶ Current analyzer
Handler¶
Gui¶
io¶
-
class
iocbio.kinetics.io.data.
Data
(experiment_id, comment=None, data={}, xname=None, xunit=None, xlim=None, config={}, type=None, type_generic=None, name=None, time=None, data_id=None, add_range=0.05)[source]¶ Class for representing recorded data
Modules¶
Sysbio¶
Confocal-catransient¶
Electrophysiology¶
Mechanics¶
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class
iocbio.kinetics.modules.sysbio.mechanics.experiment_mechanics.
ExperimentMechanics
(database, data)[source]¶ General description of experiment performed on SBMicroscope Mechanics
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class
iocbio.kinetics.modules.sysbio.mechanics.mech_ufreqcasl.
AnalyzerMechFreqCa
(database, data, database_table, signal, peak)[source]¶ Calcium fluorescence analyzer, included in the main analyzer
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class
iocbio.kinetics.modules.sysbio.mechanics.mech_ufreqcasl.
AnalyzerMechFreqCaSL
(database, data)[source]¶ Main analyzers
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class
iocbio.kinetics.modules.sysbio.mechanics.mech_ufreqcasl.
AnalyzerMechFreqmech
(database, data, database_table, signal, peak)[source]¶ Sarcomere length, fiber deformation analyzer, included in the main analyzer
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class
iocbio.kinetics.modules.sysbio.mechanics.mech_ufreqcasl_lowhigh.
AnalyzerMechUFreqCaSL_High
(database, data)[source]¶ High calcium
Misc¶
Respiration¶
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class
iocbio.kinetics.modules.sysbio.respiration.experiment_strathkelvin.
ExperimentStrathkelvin
(database, data, gen_config_table)[source]¶ General description of experiment performed on Strathkelvin
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class
iocbio.kinetics.modules.sysbio.respiration.reader.
Time
[source]¶ Base class to time quantity with units.
See also
iocbio.timeunit
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class
iocbio.kinetics.modules.sysbio.respiration.reader.
Seconds
[source]¶ Time in seconds.
See also
iocbio.timeunit