EphysPy
Contents:
ephyspy
EphysPy
Index
Index
A
|
B
|
C
|
D
|
E
|
F
|
G
|
H
|
I
|
L
|
M
|
N
|
P
|
R
|
S
|
T
|
U
|
V
|
W
A
adaptation_index() (in module ephyspy.allen_sdk.ephys_features)
add_features() (ephyspy.sweeps.EphysSweep method)
(ephyspy.sweeps.EphysSweepSet method)
add_spike_feature() (ephyspy.sweeps.EphysSweep method)
(ephyspy.sweeps.EphysSweepSet method)
added_spike_features (ephyspy.sweeps.EphysSweep attribute)
analyze_trough_details() (in module ephyspy.allen_sdk.ephys_features)
APFeature (class in ephyspy.features.sweepset_features)
APsFeature (class in ephyspy.features.sweepset_features)
APSweepFeature (class in ephyspy.features.sweep_features)
as_dict() (ephyspy.allen_sdk.ephys_extractor.EphysCellFeatureExtractor method)
available_spike_features() (in module ephyspy.features.spike_features)
available_sweep_features() (in module ephyspy.features.sweep_features)
available_sweepset_features() (in module ephyspy.features.sweepset_features)
average_rate() (in module ephyspy.allen_sdk.ephys_features)
average_voltage() (in module ephyspy.allen_sdk.ephys_features)
B
BaseFeature (class in ephyspy.features.base)
C
calculate_dvdt() (in module ephyspy.allen_sdk.ephys_features)
cell_extractor_for_nwb() (in module ephyspy.allen_sdk.ephys_extractor)
cell_features() (ephyspy.allen_sdk.ephys_extractor.EphysCellFeatureExtractor method)
check_thresholds_and_peaks() (in module ephyspy.allen_sdk.ephys_features)
clear_features() (ephyspy.sweeps.EphysSweep method)
(ephyspy.sweeps.EphysSweepSet method)
D
dataset (ephyspy.features.base.SweepSetFeature property)
detect_bursts() (in module ephyspy.allen_sdk.ephys_features)
detect_pauses() (in module ephyspy.allen_sdk.ephys_features)
detect_putative_spikes() (in module ephyspy.allen_sdk.ephys_features)
diagnostics (ephyspy.features.base.BaseFeature property)
E
ensure_correct_hyperparams() (ephyspy.features.base.BaseFeature method)
EphysCellFeatureExtractor (class in ephyspy.allen_sdk.ephys_extractor)
ephyspy
module
ephyspy.allen_sdk
module
ephyspy.allen_sdk.ephys_extractor
module
ephyspy.allen_sdk.ephys_features
module
ephyspy.analysis
module
ephyspy.features
module
ephyspy.features.base
module
ephyspy.features.spike_features
module
ephyspy.features.sweep_features
module
ephyspy.features.sweepset_features
module
ephyspy.features.utils
module
ephyspy.sweeps
module
ephyspy.utils
module
EphysSweep (class in ephyspy.sweeps)
EphysSweepSet (class in ephyspy.sweeps)
EphysSweepSetFeatureExtractor (class in ephyspy.allen_sdk.ephys_extractor)
estimate_adjusted_detection_parameters() (in module ephyspy.allen_sdk.ephys_features)
extractor_for_nwb_sweeps() (in module ephyspy.allen_sdk.ephys_extractor)
F
FeatureError
,
[1]
features (ephyspy.features.base.SweepSetFeature property)
(ephyspy.sweeps.EphysSweep attribute)
fetch_available_fts() (in module ephyspy.features.utils)
filter_putative_spikes() (in module ephyspy.allen_sdk.ephys_features)
find_downstroke_indexes() (in module ephyspy.allen_sdk.ephys_features)
find_peak_indexes() (in module ephyspy.allen_sdk.ephys_features)
find_time_index() (in module ephyspy.allen_sdk.ephys_features)
find_trough_indexes() (in module ephyspy.allen_sdk.ephys_features)
find_upstroke_indexes() (in module ephyspy.allen_sdk.ephys_features)
find_widths() (in module ephyspy.allen_sdk.ephys_features)
First5MedianFeature (class in ephyspy.features.sweepset_features)
fit_fi_slope() (in module ephyspy.allen_sdk.ephys_extractor)
fit_membrane_time_constant() (in module ephyspy.allen_sdk.ephys_features)
fit_prespike_time_constant() (in module ephyspy.allen_sdk.ephys_features)
from_sweeps() (ephyspy.allen_sdk.ephys_extractor.EphysSweepSetFeatureExtractor class method)
fwhm() (in module ephyspy.utils)
G
get_diagnostics() (ephyspy.features.base.BaseFeature method)
(ephyspy.features.base.SpikeFeature method)
get_feature() (in module ephyspy.utils)
get_features() (ephyspy.features.base.SweepSetFeature method)
(ephyspy.sweeps.EphysSweep method)
(ephyspy.sweeps.EphysSweepSet method)
get_isis() (in module ephyspy.allen_sdk.ephys_features)
get_sweep_burst_metrics() (in module ephyspy.features.utils)
get_sweep_features() (ephyspy.sweeps.EphysSweepSet method)
get_sweep_sag_idxs() (in module ephyspy.features.utils)
get_value() (ephyspy.features.base.BaseFeature method)
H
has_fixed_dt() (in module ephyspy.allen_sdk.ephys_features)
has_rebound() (in module ephyspy.features.utils)
has_spike_feature() (in module ephyspy.utils)
has_spikes() (in module ephyspy.features.utils)
has_stimulus() (in module ephyspy.features.utils)
HyperpolMedianFeature (class in ephyspy.features.sweepset_features)
I
i (ephyspy.sweeps.EphysSweepSet property)
input_resistance() (in module ephyspy.allen_sdk.ephys_extractor)
is_baseclass() (in module ephyspy.utils)
is_depol() (in module ephyspy.features.utils)
is_hyperpol() (in module ephyspy.features.utils)
is_spike_feature() (in module ephyspy.utils)
is_sweep_feature() (in module ephyspy.utils)
is_sweepset_feature() (in module ephyspy.utils)
L
latency() (in module ephyspy.allen_sdk.ephys_features)
long_squares_features() (ephyspy.allen_sdk.ephys_extractor.EphysCellFeatureExtractor method)
long_squares_stim_amps() (ephyspy.allen_sdk.ephys_extractor.EphysCellFeatureExtractor method)
lookup_spike_feature() (ephyspy.features.base.SpikeFeature method)
(ephyspy.features.base.SweepFeature method)
lookup_sweep_feature() (ephyspy.features.base.SweepFeature method)
(ephyspy.features.base.SweepSetFeature method)
lookup_sweepset_feature() (ephyspy.features.base.SweepSetFeature method)
M
MaxFeature (class in ephyspy.features.sweepset_features)
median_idx() (in module ephyspy.features.utils)
membrane_time_constant() (in module ephyspy.allen_sdk.ephys_extractor)
metadata (ephyspy.sweeps.EphysSweep attribute)
(ephyspy.sweeps.EphysSweepSet attribute)
module
ephyspy
ephyspy.allen_sdk
ephyspy.allen_sdk.ephys_extractor
ephyspy.allen_sdk.ephys_features
ephyspy.analysis
ephyspy.features
ephyspy.features.base
ephyspy.features.spike_features
ephyspy.features.sweep_features
ephyspy.features.sweepset_features
ephyspy.features.utils
ephyspy.sweeps
ephyspy.utils
N
norm_diff() (in module ephyspy.allen_sdk.ephys_features)
norm_sq_diff() (in module ephyspy.allen_sdk.ephys_features)
NullSweepFeature (class in ephyspy.features.sweep_features)
NullSweepSetFeature (class in ephyspy.features.sweepset_features)
P
parse_deps() (in module ephyspy.utils)
parse_desc() (in module ephyspy.utils)
parse_func_doc_attrs() (in module ephyspy.utils)
plot() (ephyspy.features.base.BaseFeature method)
(ephyspy.features.sweepset_features.SweepSet_dfdI method)
(ephyspy.features.sweepset_features.SweepSet_R_input method)
(ephyspy.features.sweepset_features.SweepSet_Rheobase method)
(ephyspy.sweeps.EphysSweep method)
(ephyspy.sweeps.EphysSweepSet method)
plot_feature() (ephyspy.sweeps.EphysSweep method)
plot_features() (ephyspy.sweeps.EphysSweep method)
plot_spike_feature() (in module ephyspy.analysis)
plot_spike_features() (in module ephyspy.analysis)
plot_sweepset_diagnostics() (in module ephyspy.analysis)
process() (ephyspy.allen_sdk.ephys_extractor.EphysCellFeatureExtractor method)
process_spikes() (ephyspy.allen_sdk.ephys_extractor.EphysSweepSetFeatureExtractor method)
(ephyspy.sweeps.EphysSweep method)
R
ramps_features() (ephyspy.allen_sdk.ephys_extractor.EphysCellFeatureExtractor method)
ReboundFeature (class in ephyspy.features.sweepset_features)
recompute() (ephyspy.features.base.BaseFeature method)
refine_threshold_indexes() (in module ephyspy.allen_sdk.ephys_features)
register_custom_feature() (in module ephyspy.features.utils)
relabel_line() (in module ephyspy.utils)
remove_mpl_artist_by_label() (in module ephyspy.utils)
reset_long_squares_start() (in module ephyspy.allen_sdk.ephys_extractor)
S
SAG_TARGET (ephyspy.allen_sdk.ephys_extractor.EphysCellFeatureExtractor attribute)
SagFeature (class in ephyspy.features.sweepset_features)
scatter_spike_ft() (in module ephyspy.utils)
set_stimulus_amplitude_calculator() (ephyspy.sweeps.EphysSweepSet method)
short_squares_features() (ephyspy.allen_sdk.ephys_extractor.EphysCellFeatureExtractor method)
Spike_AP_ADP (class in ephyspy.features.spike_features)
Spike_AP_AHP (class in ephyspy.features.spike_features)
Spike_AP_amp (class in ephyspy.features.spike_features)
Spike_AP_downstroke (class in ephyspy.features.spike_features)
Spike_AP_fast_trough (class in ephyspy.features.spike_features)
Spike_AP_peak (class in ephyspy.features.spike_features)
Spike_AP_slow_trough (class in ephyspy.features.spike_features)
Spike_AP_thresh (class in ephyspy.features.spike_features)
Spike_AP_trough (class in ephyspy.features.spike_features)
Spike_AP_UDR (class in ephyspy.features.spike_features)
Spike_AP_upstroke (class in ephyspy.features.spike_features)
Spike_AP_width (class in ephyspy.features.spike_features)
spike_feature_averages() (ephyspy.allen_sdk.ephys_extractor.EphysSweepSetFeatureExtractor method)
Spike_ISI (class in ephyspy.features.spike_features)
SpikeFeature (class in ephyspy.features.base)
SUBTHRESH_MAX_AMP (ephyspy.allen_sdk.ephys_extractor.EphysCellFeatureExtractor attribute)
Sweep_AP_ADP (class in ephyspy.features.sweep_features)
Sweep_AP_AHP (class in ephyspy.features.sweep_features)
Sweep_AP_amp (class in ephyspy.features.sweep_features)
Sweep_AP_amp_adapt (class in ephyspy.features.sweep_features)
Sweep_AP_amp_adapt_avg (class in ephyspy.features.sweep_features)
Sweep_AP_amp_slope (class in ephyspy.features.sweep_features)
Sweep_AP_CV (class in ephyspy.features.sweep_features)
Sweep_AP_FF (class in ephyspy.features.sweep_features)
Sweep_AP_freq (class in ephyspy.features.sweep_features)
Sweep_AP_freq_adapt (class in ephyspy.features.sweep_features)
Sweep_AP_latency (class in ephyspy.features.sweep_features)
Sweep_AP_peak (class in ephyspy.features.sweep_features)
Sweep_AP_thresh (class in ephyspy.features.sweep_features)
Sweep_AP_trough (class in ephyspy.features.sweep_features)
Sweep_AP_UDR (class in ephyspy.features.sweep_features)
Sweep_AP_width (class in ephyspy.features.sweep_features)
Sweep_Burstiness (class in ephyspy.features.sweep_features)
sweep_features() (ephyspy.allen_sdk.ephys_extractor.EphysSweepSetFeatureExtractor method)
Sweep_ISI (class in ephyspy.features.sweep_features)
Sweep_ISI_adapt (class in ephyspy.features.sweep_features)
Sweep_ISI_adapt_avg (class in ephyspy.features.sweep_features)
Sweep_ISI_CV (class in ephyspy.features.sweep_features)
Sweep_ISI_FF (class in ephyspy.features.sweep_features)
Sweep_Num_AP (class in ephyspy.features.sweep_features)
Sweep_Num_bursts (class in ephyspy.features.sweep_features)
Sweep_R_input (class in ephyspy.features.sweep_features)
Sweep_Rebound (class in ephyspy.features.sweep_features)
Sweep_Rebound_APs (class in ephyspy.features.sweep_features)
Sweep_Rebound_area (class in ephyspy.features.sweep_features)
Sweep_Rebound_avg (class in ephyspy.features.sweep_features)
Sweep_Rebound_latency (class in ephyspy.features.sweep_features)
Sweep_Sag (class in ephyspy.features.sweep_features)
Sweep_Sag_area (class in ephyspy.features.sweep_features)
Sweep_Sag_fraction (class in ephyspy.features.sweep_features)
Sweep_Sag_ratio (class in ephyspy.features.sweep_features)
Sweep_Sag_time (class in ephyspy.features.sweep_features)
Sweep_Stim_amp (class in ephyspy.features.sweep_features)
Sweep_Stim_end (class in ephyspy.features.sweep_features)
Sweep_Stim_onset (class in ephyspy.features.sweep_features)
Sweep_Tau (class in ephyspy.features.sweep_features)
Sweep_V_baseline (class in ephyspy.features.sweep_features)
Sweep_V_deflect (class in ephyspy.features.sweep_features)
Sweep_V_plateau (class in ephyspy.features.sweep_features)
Sweep_V_rest (class in ephyspy.features.sweep_features)
Sweep_V_sag (class in ephyspy.features.sweep_features)
Sweep_V_steady (class in ephyspy.features.sweep_features)
Sweep_Wildness (class in ephyspy.features.sweep_features)
SweepFeature (class in ephyspy.features.base)
sweeps() (ephyspy.allen_sdk.ephys_extractor.EphysSweepSetFeatureExtractor method)
SweepSet_AP_ADP (class in ephyspy.features.sweepset_features)
SweepSet_AP_AHP (class in ephyspy.features.sweepset_features)
SweepSet_AP_amp (class in ephyspy.features.sweepset_features)
SweepSet_AP_amp_adapt (class in ephyspy.features.sweepset_features)
SweepSet_AP_amp_adapt_avg (class in ephyspy.features.sweepset_features)
SweepSet_AP_amp_slope (class in ephyspy.features.sweepset_features)
SweepSet_AP_CV (class in ephyspy.features.sweepset_features)
SweepSet_AP_FF (class in ephyspy.features.sweepset_features)
SweepSet_AP_freq (class in ephyspy.features.sweepset_features)
SweepSet_AP_freq_adapt (class in ephyspy.features.sweepset_features)
SweepSet_AP_latency (class in ephyspy.features.sweepset_features)
SweepSet_AP_peak (class in ephyspy.features.sweepset_features)
SweepSet_AP_thresh (class in ephyspy.features.sweepset_features)
SweepSet_AP_trough (class in ephyspy.features.sweepset_features)
SweepSet_AP_UDR (class in ephyspy.features.sweepset_features)
SweepSet_AP_width (class in ephyspy.features.sweepset_features)
SweepSet_Burstiness (class in ephyspy.features.sweepset_features)
SweepSet_dfdI (class in ephyspy.features.sweepset_features)
SweepSet_ISI (class in ephyspy.features.sweepset_features)
SweepSet_ISI_adapt (class in ephyspy.features.sweepset_features)
SweepSet_ISI_adapt_avg (class in ephyspy.features.sweepset_features)
SweepSet_ISI_CV (class in ephyspy.features.sweepset_features)
SweepSet_ISI_FF (class in ephyspy.features.sweepset_features)
SweepSet_Num_AP (class in ephyspy.features.sweepset_features)
SweepSet_Num_bursts (class in ephyspy.features.sweepset_features)
SweepSet_R_input (class in ephyspy.features.sweepset_features)
SweepSet_Rebound (class in ephyspy.features.sweepset_features)
SweepSet_Rebound_APs (class in ephyspy.features.sweepset_features)
SweepSet_Rebound_area (class in ephyspy.features.sweepset_features)
SweepSet_Rebound_avg (class in ephyspy.features.sweepset_features)
SweepSet_Rebound_latency (class in ephyspy.features.sweepset_features)
SweepSet_Rheobase (class in ephyspy.features.sweepset_features)
SweepSet_Sag (class in ephyspy.features.sweepset_features)
SweepSet_Sag_area (class in ephyspy.features.sweepset_features)
SweepSet_Sag_fraction (class in ephyspy.features.sweepset_features)
SweepSet_Sag_ratio (class in ephyspy.features.sweepset_features)
SweepSet_Sag_time (class in ephyspy.features.sweepset_features)
SweepSet_Slow_hyperpolarization (class in ephyspy.features.sweepset_features)
SweepSet_Tau (class in ephyspy.features.sweepset_features)
SweepSet_V_baseline (class in ephyspy.features.sweepset_features)
SweepSet_V_rest (class in ephyspy.features.sweepset_features)
SweepSet_Wildness (class in ephyspy.features.sweepset_features)
SweepSetFeature (class in ephyspy.features.base)
T
t (ephyspy.sweeps.EphysSweepSet property)
U
unpack() (in module ephyspy.utils)
V
v (ephyspy.sweeps.EphysSweepSet property)
value (ephyspy.features.base.BaseFeature property)
W
where_between() (in module ephyspy.utils)
where_stimulus() (in module ephyspy.features.utils)