Generated by Cython 0.27.2
Yellow lines hint at Python interaction.
Click on a line that starts with a "+
" to see the C code that Cython generated for it.
Raw output: vlen.c
+001: # -*- coding: utf-8 -*-
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002: # cython: embedsignature=True
003: # cython: profile=False
004: # cython: linetrace=False
005: # cython: binding=False
006: from __future__ import absolute_import, print_function, division
007:
008:
009: import cython
010: cimport cython
+011: import numpy as np
__pyx_t_1 = __Pyx_Import(__pyx_n_s_numpy, 0, 0); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 11, __pyx_L1_error) __Pyx_GOTREF(__pyx_t_1); if (PyDict_SetItem(__pyx_d, __pyx_n_s_np, __pyx_t_1) < 0) __PYX_ERR(0, 11, __pyx_L1_error) __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
+012: from .abc import Codec
__pyx_t_1 = PyList_New(1); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 12, __pyx_L1_error) __Pyx_GOTREF(__pyx_t_1); __Pyx_INCREF(__pyx_n_s_Codec); __Pyx_GIVEREF(__pyx_n_s_Codec); PyList_SET_ITEM(__pyx_t_1, 0, __pyx_n_s_Codec); __pyx_t_2 = __Pyx_Import(__pyx_n_s_abc, __pyx_t_1, 1); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 12, __pyx_L1_error) __Pyx_GOTREF(__pyx_t_2); __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0; __pyx_t_1 = __Pyx_ImportFrom(__pyx_t_2, __pyx_n_s_Codec); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 12, __pyx_L1_error) __Pyx_GOTREF(__pyx_t_1); if (PyDict_SetItem(__pyx_d, __pyx_n_s_Codec, __pyx_t_1) < 0) __PYX_ERR(0, 12, __pyx_L1_error) __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0; __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
013: from .compat_ext cimport Buffer
+014: from .compat_ext import Buffer
__pyx_t_2 = PyList_New(1); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 14, __pyx_L1_error) __Pyx_GOTREF(__pyx_t_2); __Pyx_INCREF(__pyx_n_s_Buffer); __Pyx_GIVEREF(__pyx_n_s_Buffer); PyList_SET_ITEM(__pyx_t_2, 0, __pyx_n_s_Buffer); __pyx_t_1 = __Pyx_Import(__pyx_n_s_compat_ext, __pyx_t_2, 1); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 14, __pyx_L1_error) __Pyx_GOTREF(__pyx_t_1); __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0; __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
015: from cpython cimport (PyBytes_GET_SIZE, PyBytes_AS_STRING, PyBytes_Check,
016: PyBytes_FromStringAndSize, PyUnicode_AsUTF8String)
017: from cpython.buffer cimport PyBUF_ANY_CONTIGUOUS
018: from libc.string cimport memcpy
019:
020:
021: cdef extern from "stdint_compat.h":
022: void store_le32(char *c, int y)
023: int load_le32(const char *c)
024:
025:
026: cdef extern from "Python.h":
027: bytearray PyByteArray_FromStringAndSize(char *v, Py_ssize_t l)
028: char* PyByteArray_AS_STRING(object string)
029: object PyUnicode_FromStringAndSize(const char *u, Py_ssize_t size)
030: int PyUnicode_Check(object text)
031:
032:
033: # 4 bytes to store number of items
+034: cdef Py_ssize_t HEADER_LENGTH = 4
__pyx_v_9numcodecs_4vlen_HEADER_LENGTH = 4;
035:
036:
+037: def check_out_param(out, n_items):
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+038: if not isinstance(out, np.ndarray):
__pyx_t_1 = __Pyx_GetModuleGlobalName(__pyx_n_s_np); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 38, __pyx_L1_error) __Pyx_GOTREF(__pyx_t_1); __pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_t_1, __pyx_n_s_ndarray); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 38, __pyx_L1_error) __Pyx_GOTREF(__pyx_t_2); __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0; __pyx_t_3 = PyObject_IsInstance(__pyx_v_out, __pyx_t_2); if (unlikely(__pyx_t_3 == ((int)-1))) __PYX_ERR(0, 38, __pyx_L1_error) __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0; __pyx_t_4 = ((!(__pyx_t_3 != 0)) != 0); if (__pyx_t_4) { /* … */ }
+039: raise TypeError('out must be 1-dimensional array')
__pyx_t_2 = __Pyx_PyObject_Call(__pyx_builtin_TypeError, __pyx_tuple_, NULL); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 39, __pyx_L1_error) __Pyx_GOTREF(__pyx_t_2); __Pyx_Raise(__pyx_t_2, 0, 0, 0); __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0; __PYX_ERR(0, 39, __pyx_L1_error) /* … */ __pyx_tuple_ = PyTuple_Pack(1, __pyx_kp_s_out_must_be_1_dimensional_array); if (unlikely(!__pyx_tuple_)) __PYX_ERR(0, 39, __pyx_L1_error) __Pyx_GOTREF(__pyx_tuple_); __Pyx_GIVEREF(__pyx_tuple_);
+040: if out.dtype != object:
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+041: raise ValueError('out must be object array')
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+042: out = out.reshape(-1, order='A')
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+044: raise ValueError('out is too small')
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+045: return out
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046:
047:
+048: class VLenUTF8(Codec):
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049: """Encode variable-length unicode string objects via UTF-8.
050:
051: Examples
052: --------
053: >>> import numcodecs
054: >>> import numpy as np
055: >>> x = np.array(['foo', 'bar', 'baz'], dtype='object')
056: >>> codec = numcodecs.VLenUTF8()
057: >>> codec.decode(codec.encode(x))
058: array(['foo', 'bar', 'baz'], dtype=object)
059:
060: See Also
061: --------
062: numcodecs.pickles.Pickle, numcodecs.json.JSON, numcodecs.msgpacks.MsgPack
063:
064: Notes
065: -----
066: The encoded bytes values for each string are packed into a parquet-style byte array.
067:
068: """
069:
+070: codec_id = 'vlen-utf8'
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071:
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073: pass
074:
075: @cython.wraparound(False)
076: @cython.boundscheck(False)
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078: cdef:
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132: @cython.boundscheck(False)
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134: cdef:
135: Buffer input_buffer
136: char* data
137: char* data_end
138: Py_ssize_t i, l, n_items, data_length, input_length
139:
140: # accept any buffer
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143:
144: # sanity checks
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147:
148: # obtain input data pointer
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151:
152: # load number of items
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154:
155: # setup output
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158: else:
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160:
161: # iterate and decode - N.B., do not try to cast `out` as object[:]
162: # as this causes segfaults, possibly similar to
163: # https://github.com/cython/cython/issues/1608
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174:
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176:
177:
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179: """Encode variable-length byte string objects.
180:
181: Examples
182: --------
183: >>> import numcodecs
184: >>> import numpy as np
185: >>> x = np.array([b'foo', b'bar', b'baz'], dtype='object')
186: >>> codec = numcodecs.VLenBytes()
187: >>> codec.decode(codec.encode(x))
188: array([b'foo', b'bar', b'baz'], dtype=object)
189:
190: See Also
191: --------
192: numcodecs.pickles.Pickle
193:
194: Notes
195: -----
196: The bytes values for each string are packed into a parquet-style byte array.
197:
198: """
199:
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259: cdef:
260: Buffer input_buffer
261: char* data
262: char* data_end
263: Py_ssize_t i, l, n_items, data_length, input_length
264:
265: # accept any buffer
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268:
269: # sanity checks
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272:
273: # obtain input data pointer
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276:
277: # load number of items
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279:
280: # setup output
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283: else:
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285:
286: # iterate and decode - N.B., do not try to cast `out` as object[:]
287: # as this causes segfaults, possibly similar to
288: # https://github.com/cython/cython/issues/1608
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__pyx_t_6 = (((__pyx_v_data + __pyx_v_l) > __pyx_v_data_end) != 0); if (__pyx_t_6) { /* … */ }
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299:
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301:
302:
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304: """Encode variable-length 1-dimensional arrays via UTF-8.
305:
306: Examples
307: --------
308: >>> import numcodecs
309: >>> import numpy as np
310: >>> x = np.array([[1, 3, 5], [4], [7, 9]], dtype='object')
311: >>> codec = numcodecs.VLenArray('<i4')
312: >>> codec.decode(codec.encode(x))
313: array([array([1, 3, 5], dtype=int32), array([4], dtype=int32),
314: array([7, 9], dtype=int32)], dtype=object)
315:
316: See Also
317: --------
318: numcodecs.pickles.Pickle, numcodecs.json.JSON, numcodecs.msgpacks.MsgPack
319:
320: Notes
321: -----
322: The binary data for each array are packed into a parquet-style byte array.
323:
324: """
325:
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397:
398: @cython.wraparound(False)
399: @cython.boundscheck(False)
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401: cdef:
402: Buffer input_buffer
403: char* data
404: char* data_end
405: Py_ssize_t i, l, n_items, data_length, input_length
406:
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414:
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421:
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427:
428: # iterate and decode - N.B., do not try to cast `out` as object[:]
429: # as this causes segfaults, possibly similar to
430: # https://github.com/cython/cython/issues/1608
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