{% extends "layout.html" %} {% from "macros.html" import igv_open_file %} {% block title %}Statistics{% endblock %} {% block body %}
Sample | Disease | Examined Reads (in reads × 106) |
Duplication Rate | Unmapped Reads (in reads × 106) |
Coverage | Cov > 1 | Cov > 5 | Cov > 10 | Cov > 20 | Cov > 50 | Cov > 100 |
---|---|---|---|---|---|---|---|---|---|---|---|
{{ igv_open_file('bam' + "/" + s.basename + '.bam', s.basename) }} | {{ s.disease }} | {{ ((s.examined_pairs() * 2)/1000000)|round(1) }} | {{ s.duplication_rate()|round(2) }} | {{ (s.unmapped_reads()/1000000)|round(1) }} | {{ (s.capturekit_coverage)|round(2) }} | {{ (s.capturekit_coverage_greater(1)) | round(3) }} | {{ (s.capturekit_coverage_greater(5)) | round(3) }} | {{ (s.capturekit_coverage_greater(10)) | round(3) }} | {{ (s.capturekit_coverage_greater(20)) | round(3) }} | {{ (s.capturekit_coverage_greater(50)) | round(3) }} | {{ (s.capturekit_coverage_greater(100)) | round(3) }} |