HelloFasta package

Submodules

HelloFasta.challenge module

class HelloFasta.challenge.HelloFastaChallenge

Bases: challenges.challenge.Challenge

Given: A DNA strand followed by fasta reads. Return: The id of the read which the shortest distance to the given strand.

build()

calc()

expect = 'Fasta2'

sample = '\n ACCGGTCC\n >Fasta1\n AGCG\n GGCC \n >Fasta2\n ACCC\n GTCC \n >Fasta3\n ACCG\n TTTT \n '

HelloFasta.test module

class HelloFasta.test.HelloFastaTest(methodName='runTest')

Bases: unittest.case.TestCase

setUp()

test__init__()

test_build()

test_full_integration()

Module contents