Set Root
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DNA
Protein
Base substitution rates
JC
F81
K2P
HKY
TN
TNe
K3P
K3Pu
TPM2
TPM2u
TPM3
TPM3u
TIM
TIMe
TIM2
TIM2e
TIM3
TIM3e
TVM
TVMe
SYM
GTR
Base frequencies
-
F
FO
FQ
Rate heterogeneity across sites
-
I
G
I+G
R
I+R
Amino-acid exchange rate matrices
Blosum62
cpREV
Dayhoff
DCMut
FLU
HIVb
HIVw
JTT
JTTDCMut
LG
mtART
mtMAM
mtREV
mtZOA
mtMet
mtVer
mtInv
Poisson
PMB
rtREV
VT
WAG
GTR20
Protein mixture models
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C10
C20
C30
C40
C50
C60
EX2
EX3
EHO
UL2
UL3
EX_EHO
LG4M
LG4X
CF4
Amino-acid frequencies
-
F
FO
FQ
Rate heterogeneity across sites
-
I
G
I+G
R
I+R
Snapshots
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