D-SCRIPT
Installation
Usage
Data
API
D-SCRIPT
»
Index
Index
A
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B
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C
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D
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E
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F
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G
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I
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L
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M
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P
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R
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S
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T
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U
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W
A
add_args() (in module dscript.commands.embed)
(in module dscript.commands.eval)
(in module dscript.commands.predict)
(in module dscript.commands.train)
Alphabet (class in dscript.alphabets)
B
broadcast() (dscript.models.contact.ContactCNN method)
build_human_1() (in module dscript.pretrained)
build_lm_1() (in module dscript.pretrained)
C
clip() (dscript.models.contact.ContactCNN method)
(dscript.models.interaction.LogisticActivation method)
(dscript.models.interaction.ModelInteraction method)
collate_paired_sequences() (in module dscript.utils)
ContactCNN (class in dscript.models.contact)
cpred() (dscript.models.interaction.ModelInteraction method)
D
decode() (dscript.alphabets.Alphabet method)
dscript.alphabets (module)
dscript.commands.embed (module)
dscript.commands.eval (module)
dscript.commands.predict (module)
dscript.commands.train (module)
dscript.fasta (module)
dscript.language_model (module)
dscript.models.contact (module)
dscript.models.embedding (module)
dscript.models.interaction (module)
dscript.pretrained (module)
dscript.utils (module)
E
embed() (dscript.models.interaction.ModelInteraction method)
embed_from_directory() (in module dscript.language_model)
embed_from_fasta() (in module dscript.language_model)
encode() (dscript.alphabets.Alphabet method)
F
forward() (dscript.models.contact.ContactCNN method)
(dscript.models.contact.FullyConnected method)
(dscript.models.embedding.FullyConnectedEmbed method)
(dscript.models.embedding.IdentityEmbed method)
(dscript.models.embedding.SkipLSTM method)
(dscript.models.interaction.LogisticActivation method)
(dscript.models.interaction.ModelInteraction method)
FullyConnected (class in dscript.models.contact)
FullyConnectedEmbed (class in dscript.models.embedding)
G
get_pretrained() (in module dscript.pretrained)
get_state_dict() (in module dscript.pretrained)
gpu_mem() (in module dscript.utils)
I
IdentityEmbed (class in dscript.models.embedding)
interaction_eval() (in module dscript.commands.train)
interaction_grad() (in module dscript.commands.train)
L
lm_embed() (in module dscript.language_model)
LogisticActivation (class in dscript.models.interaction)
M
main() (in module dscript.commands.embed)
(in module dscript.commands.eval)
(in module dscript.commands.predict)
(in module dscript.commands.train)
map_predict() (dscript.models.interaction.ModelInteraction method)
ModelInteraction (class in dscript.models.interaction)
P
PairedDataset (class in dscript.utils)
parse() (in module dscript.fasta)
parse_directory() (in module dscript.fasta)
plot_eval_predictions() (in module dscript.commands.eval)
plot_PR_curve() (in module dscript.utils)
plot_ROC_curve() (in module dscript.utils)
predict() (dscript.models.contact.ContactCNN method)
(dscript.models.interaction.ModelInteraction method)
predict_cmap_interaction() (in module dscript.commands.train)
predict_interaction() (in module dscript.commands.train)
R
RBF() (in module dscript.utils)
S
SkipLSTM (class in dscript.models.embedding)
T
to_one_hot() (dscript.models.embedding.SkipLSTM method)
transform() (dscript.models.embedding.SkipLSTM method)
U
Uniprot21 (class in dscript.alphabets)
W
write() (in module dscript.fasta)