{% extends "layout.html" %} {% from "cases/actionbar.html" import action_bar, research_modal, rerun_modal %} {% from "utils.html" import flash_messages, comments_panel, activity_panel %} {% block title %} {{ super() }} - {{ institute.display_name }} - {{ case.display_name }} {% endblock %} {% block top_nav %} {{ super() }}
No pedigree picture available.
{% endif %}Sample | Tumor Type | Phenotype | Sequencing | TMB | MSI | Tumor Purity | Tissue |
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{{ ind.display_name }} | {{ ind.tumor_type or 'Unknown'}} | {{ ind.phenotype_human }} | {{ ind.analysis_type|upper }} | {{ ind.tmb or 'N/A' }} | {{ ind.msi or 'N/A' }} | {{ ind.tumor_purity or 'N/A' }} | {{ ind.tissue_type or 'unknown' }} |
{% if variant.category == "snv" %} {{ variant.hgnc_symbols|join(', ') }} {% else %} {{ variant.sub_category|upper }}({{ variant.chromosome }}{{ variant.cytoband_start }}-{{ variant.chromosome }}{{ variant.cytoband_end }}) {% endif %} | {% if variant.sanger_ordered and not variant.validation in ['True positive','False positive'] %} Verification ordered {% elif variant.sanger_ordered %} Validated {% elif variant.manual_rank %} {{ variant.manual_rank }} {% endif %} {% if variant.mosaic_tags %} mosaic {% endif %} | {{ remove_form(url_for('cases.pin_variant', institute_id=institute._id, case_name=case.display_name, variant_id=variant._id), button_name='action', button_value='DELETE') }} | {% else %}{{ variant }} (not loaded) | {% endif %}
This case is in MatchMaker!
{% else %}
This case is not yet in MatchMaker! Submission form
{% endif %} {% if case.mme_submission %} {{ modal_mme_delete() }} {% endif %}Panel | Version | Genes | ||
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{{ panel.display_name|truncate(30, True) }} {% if panel.is_default %} Default {% endif %} | {{ panel.version }} ({{ panel.updated_at.date() }}) | {{ panel.nr_genes }} | ||
No panels linked to case |