MAVIS
1.6.4
About
Running the Pipeline
MAVIS standard input file format
Reference Input Files
Configuration and Settings
Supported SV Callers
Illustrations
Frequently Asked Questions
Theory and Models
Guidelines for Contributors
Package Documentation
align module
annotate subpackage
assemble module
bam subpackage
blat module
breakpoint module
checker module
cluster subpackage
config module
constants module
error module
illustrate subpackage
interval module
pairing subpackage
validate subpackage
submit module
summary subpackage
Sub-package Documentation
constants module
main module
summary module
tools module
util module
Glossary
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MAVIS
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Package Documentation
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summary subpackage
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constants module
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constants module
¶
mavis.summary.constants.
HOMOPOLYMER_MIN_LENGTH
= 5
¶
filter_cdna_synon
filter_min_flanking_reads
filter_min_linking_split_reads
filter_min_remapped_reads
filter_min_spanning_reads
filter_min_split_reads
filter_protein_synon