{% from "variants/utils.html" import tier_cell %} {% macro pretty_link_variant(variant, case) %} {# Returns human readable links to the corresponding variant page #} {% if variant.category in "str" %} {{ variant.str_repid }} {{ variant.alternative }} {% elif variant.category in ("snv", "cancer") %} {% set display_genes = [] %} {% for gene in variant.genes %} {% if gene.hgvs_identifier and gene.hgnc_symbol %} {{ "" if display_genes.append(gene.hgnc_symbol + ' ' + gene.hgvs_identifier) }} {% elif gene.hgnc_symbol %} {{ "" if display_genes.append(gene.hgnc_symbol) }} {% elif gene.hgvs_identifier and gene.hgnc_id %} {{ "" if display_genes.append( gene.hgnc_id|string + ' ' + gene.hgvs_identifier) }} {% endif %} {% endfor %} {% if not display_genes %} {{ "" if display_genes.append( variant.simple_id ) }} {% endif %} {{ display_genes|join(", ") }} {% else %} {{ variant.sub_category|upper }}({{ variant.chromosome }}{{ variant.cytoband_start }}-{{ variant.chromosome }}{{ variant.cytoband_end }}) {% endif %} {% endmacro %} {% macro causatives_list(causatives, partial_causatives, institute, case) %}