FastQCFastQC Report
Fri 23 Sep 2016
Hm2_GTGAAA_L005_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHm2_GTGAAA_L005_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1499
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGTGAAAATCTCGTATG1268.405603735823883TruSeq Adapter, Index 19 (97% over 49bp)
GTTGAACTCATCTGCTTGCTACAAAGCTGTTGAGATATCAACATTAATTA221.467645096731154No Hit
CAGAAAGGAAAGGCCACAACCCGCGCACCCCAGCCCCGATCCGGCGGGGA191.267511674449633No Hit
AGGGTGCAAGATCATCCACAATGTCACCACAACGAGACCGGATAAATGCC161.0673782521681119No Hit
TCAAGGAAACAGGTAGACTTTTTGCTAAAATGACTTACAAAATGAGGGCA161.0673782521681119No Hit
TCAGGGACAAGAGCAGGATTAGGGATATCCGAGATGGCCACACTTTTAAG161.0673782521681119No Hit
TGACAAAGAGTCATGTTCAGTGCAGCTGGCTAGAGCCCTAAGAAGCCATA161.0673782521681119No Hit
GCTGCTACTCGGCTGATCTCACTTCACTAGGTCAGTGAATCTCTGAGGTG151.0006671114076051No Hit
GCTGCTACTCGGCTGATCTCACCTTATCACTGACTTTGGAGTACAGCGAA151.0006671114076051No Hit
GCTGCTACTCGGCTGATCTCACAGAAACTTCGTATTTTCAAAGTTTTCTT120.8005336891260841No Hit
AGCAAAGTGATTGCCTCCCAAGTTCCACAATGACAGAGATCTACGACTTC110.733822548365577No Hit
GCTGCTACTCGGCTGATCTCACAAGCCCATGAGTACACTGTTGCTATTCT110.733822548365577No Hit
CCAGCCCATCAACCATCCACTCCCACGATTGGAGCCAATGGCAGAAGAGC110.733822548365577No Hit
GCTGCTACTCGGCTGATCTCACTGCATCTCTAATTGGTTCCAAAACTGTT110.733822548365577No Hit
TCCAAGTGGTTCCCCGTTATGGACTCGCTATCTGTCAACCAGATCTTATA100.66711140760507No Hit
GCTGCTACTCGGCTGATCTCACTAGCCTTTGCCTAAGAATTACAAAGTAA80.5336891260840559No Hit
GCTGCTACTCGGCTGATCTCACCTATGAATTTGAAGCAATCTATACTGCC50.333555703802535No Hit
GCTGCTACTCGGCTGATCTCACGTTCCTGGTACTTGTGTGGACTGGGCTT40.26684456304202797No Hit
GCTGCTACTCGGCTGATCTCACCTATGAAATTGAAGCAATCTATACTGCC40.26684456304202797No Hit
GCTGCTACTCGGCTGATCTCACTTCACTAGTTCAGTGAATCTCTGAGGTG30.20013342228152103No Hit
GCTGCTACTCGGCTGATCTCACAAGCCCATGAGTATACTGTTGCTATTCT30.20013342228152103No Hit
AAGCTTCCATATTCTCCGGATGATCAGTGTCTTGGTCCTGCCGAATTACT20.13342228152101399No Hit
GCTGCTACTCGGCTGATCTCACGCCGCTTCACCGCTGTGATCATAAACGT20.13342228152101399No Hit
CACCAGATTCTGAGTCCGCAAGCACACAGAAGTGACGGCACCAGAGTTTT20.13342228152101399No Hit
AACCCGTTGCCAGCCGACAACTCCAAGGAATGACAAATGGACGGACCAGT20.13342228152101399No Hit
TTCGTTCCAAGAGCTATCATCATCACCGTAAGCCCATGAGTACACTGTTG20.13342228152101399No Hit
AGATCGGACGAGCACACGTCTGAACTCCAGTCACGTGAAAATCTCGTATG20.13342228152101399TruSeq Adapter, Index 19 (97% over 39bp)
CCTGCGGATCTTGGCTGGACTCCGTTGCAGTGTCAATGTCTAGGGGTGTG20.13342228152101399No Hit
TTCATGTCTGTTCTCTCATCAGTGGTAGAACCAATATATGGGACTCTCAA20.13342228152101399No Hit
TTATCAACGCACTGCTCATGTGTTAACCCTTCACCTGAAGCTTGAGCATT20.13342228152101399No Hit
ATAGTCACTATGACATCCCAGGGAATGTATGGGGGAACTTACCTAGTGGA20.13342228152101399No Hit
GCTGCTACTCGGCTGATCTCACGAGAGACGGGTGATGCTCATATAAACAA20.13342228152101399No Hit
TCAAACCACTGGGAGCTGTGCATGTAAACTCCCAAGTTAATAACTTTCTC20.13342228152101399No Hit
CATCAGAATTAAGAAAAACGTAGGGTCCAAGTGGTTCCCCGTTATGGACT20.13342228152101399No Hit
GCTGCTACTCGGCTGATCTCACCGCGCTTCACCGCTGTGATCATAAACGT20.13342228152101399No Hit
GCATGAAAGTACACGATGACTCATCAAAATTCGAGATAAGGTACCCTTGG20.13342228152101399No Hit
TCATTTTGCAATAATCGGCAGAGTAGACTTCACTCTTCTTTCTCCTGAAG20.13342228152101399No Hit
ATTGGCCATCACCTCAAGGCAAATGAGACAATTGTTTCATCACATTTTTT20.13342228152101399No Hit
CCTCTTAATAAGGATGGCACTGTTGCCCGCTCCTATTGGGGGGATGAATT20.13342228152101399No Hit
CCAGCCCATCAACCATCCGTCGTGAGATCAGCCGAGTAGCAGCCGAGTAG20.13342228152101399No Hit
CCAACTGCCTCCGTGCCTGTCACGATAGCCGTTGATTATGATTCCACAAA20.13342228152101399No Hit
GCTGCTACTCGGCTGATCTCACTGCATCTCTAATTGGTTCCAACATGCCA20.13342228152101399No Hit
CACACAGTTGTGTGCAAGTTTTGAGCATCAAGTGAAGGACCATGGATAGG20.13342228152101399No Hit
TGACCTTTCCAGCTGACCTCCTTACCATCTCTTGCCCTAATCTAAAATAT20.13342228152101399No Hit
GCTGCTACTCGGCTGATCTCACGTCGCTTCACCGCTGTGATCATAAACGT20.13342228152101399No Hit

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA155.353554E-495.02
GAAGAGC155.353554E-495.07
TCGGAAG155.353554E-495.04
CGGAAGA155.353554E-495.05
ATCGGAA155.353554E-495.03
AAGAGCA200.001679748571.258
AGAGCAC200.001679748571.259
GGAAGAG200.001679748571.256
AGATCGG200.001679748571.251
GTATGCC150.00932484947.546-47
AATCTCG150.00932484947.540-41
GTCACGT150.00932484947.530-31
ATCTCGT150.00932484947.540-41
CAGTCAC150.00932484947.528-29
CACACGT150.00932484947.512-13
AAATCTC150.00932484947.538-39
ACGTCTG150.00932484947.516-17
TGCCGTC150.00932484947.548-49
CCAGTCA150.00932484947.526-27
CACGTCT150.00932484947.514-15