src.co_tools.get_fasta_file
1#!/usr/bin/env python 2import os 3import sys 4 5from .co_fasta import find_fasta_file 6 7if os.getenv("CO_LOG").lower() == "true": 8 from .get_logger import LOGGER 9 10 log = LOGGER 11else: 12 import logging 13 14 log = logging.getLogger(__name__) 15 16 17def main(argv=sys.argv): 18 if len(argv) == 1: 19 log.warning( 20 "You failed to provide a search directory." 21 + " Will continue by searching in ../data" 22 ) 23 print(find_fasta_file("../data")) 24 return 0 25 else: 26 log.info(f"Input dir to search for fasta file: {sys.argv[1]}") 27 print(find_fasta_file(sys.argv[1])) 28 return 0 29 30 31if __name__ == "__main__": 32 sys.exit(main(sys.argv))
def
main( argv=['/home/zappuf/.local/bin/pdoc', 'src/co_tools/', '-o', 'docs/']):
18def main(argv=sys.argv): 19 if len(argv) == 1: 20 log.warning( 21 "You failed to provide a search directory." 22 + " Will continue by searching in ../data" 23 ) 24 print(find_fasta_file("../data")) 25 return 0 26 else: 27 log.info(f"Input dir to search for fasta file: {sys.argv[1]}") 28 print(find_fasta_file(sys.argv[1])) 29 return 0