Index

A

alias (cnnclustering.cnn.CNN attribute)

B

by_parts() (cnnclustering.cnn.Points method)

C

c (cnnclustering.cnn.CNNRecord attribute) calc_dist() (cnnclustering.cnn.CNN method) (in module cnnclustering.cnn) calc_neighbours_from_cKDTree() (cnnclustering.cnn.CNN method) calc_neighbours_from_dist() (cnnclustering.cnn.CNN method) check() (cnnclustering.cnn.CNN method) children (cnnclustering.cnn.CNN attribute) cKDTree() (cnnclustering.cnn.Points method) clusters (cnnclustering.cnn.CNNRecord attribute)

CMSM (class in cnnclustering.cmsm) cmsm() (cnnclustering.cmsm.CMSM method) CNN (class in cnnclustering.cnn) CNNChild (class in cnnclustering.cnn) cnnclustering.cmsm module CNNRecord (class in cnnclustering.cnn) consider (cnnclustering.cnn.Labels attribute) cut() (cnnclustering.cnn.CNN method)

D

Data (class in cnnclustering.cnn) data (cnnclustering.cnn.CNN attribute) Densitygraph (class in cnnclustering.cnn) DensitygraphABC (class in cnnclustering.cnn)

DensitySparsegraphArray (class in cnnclustering.cnn) dict2labels() (cnnclustering.cnn.Labels static method) dist_hist() (cnnclustering.cnn.CNN method) Distances (class in cnnclustering.cnn) distances (cnnclustering.cnn.Data attribute)

E

evaluate() (cnnclustering.cnn.CNN method)

F

fit() (cnnclustering.cnn.CNN method) (in module cnnclustering.cnn)

fix_missing() (cnnclustering.cnn.Labels method) from_file() (cnnclustering.cnn.Points class method) from_parts() (cnnclustering.cnn.Points class method)

G

get_connected_sets() (cnnclustering.cmsm.CMSM method) get_dtraj() (cnnclustering.cnn.CNN method) get_milestoning() (cnnclustering.cmsm.CMSM method)

get_samples() (cnnclustering.cnn.CNN method) get_shape() (cnnclustering.cnn.Points static method) graph (cnnclustering.cnn.Data attribute)

H

hierarchy_level (cnnclustering.cnn.CNN attribute)

I

info (cnnclustering.cnn.Labels attribute)

insert() (cnnclustering.cnn.Summary method) isolate() (cnnclustering.cnn.CNN method)

L

LabelInfo (class in cnnclustering.cnn) Labels (class in cnnclustering.cnn) labels (cnnclustering.cnn.CNN attribute)

labels2dict() (cnnclustering.cnn.Labels static method) largest (cnnclustering.cnn.CNNRecord attribute) load() (cnnclustering.cnn.Points static method)

M

max (cnnclustering.cnn.CNNRecord attribute) merge() (cnnclustering.cnn.Labels method)

min (cnnclustering.cnn.CNNRecord attribute) module cnnclustering.cmsm

N

n_neighbours() (cnnclustering.cnn.Neighbourhoods property) (cnnclustering.cnn.NeighbourhoodsABC property) (cnnclustering.cnn.NeighbourhoodsArray property) (cnnclustering.cnn.NeighbourhoodsList property) Neighbourhoods (class in cnnclustering.cnn)

neighbourhoods (cnnclustering.cnn.Data attribute) NeighbourhoodsABC (class in cnnclustering.cnn) NeighbourhoodsArray (class in cnnclustering.cnn) NeighbourhoodsList (class in cnnclustering.cnn) noise (cnnclustering.cnn.CNNRecord attribute)

O

origin (cnnclustering.cnn.LabelInfo attribute)

P

params (cnnclustering.cnn.LabelInfo attribute) parent (cnnclustering.cnn.CNNChild attribute) Points (class in cnnclustering.cnn)

points (cnnclustering.cnn.CNNRecord attribute) (cnnclustering.cnn.Data attribute) predict() (cnnclustering.cnn.CNN method)

R

r (cnnclustering.cnn.CNNRecord attribute) radius() (cnnclustering.cnn.Neighbourhoods property) (cnnclustering.cnn.NeighbourhoodsABC property) recorded() (in module cnnclustering.cnn)

reel() (cnnclustering.cnn.CNN method) reference (cnnclustering.cnn.LabelInfo attribute) reference() (cnnclustering.cnn.Neighbourhoods property) (cnnclustering.cnn.NeighbourhoodsABC property)

S

self_counting() (cnnclustering.cnn.Neighbourhoods property) (cnnclustering.cnn.NeighbourhoodsABC property) shape (cnnclustering.cnn.Data attribute) sort_by_size() (cnnclustering.cnn.Labels method)

status (cnnclustering.cnn.CNN attribute) summarize() (cnnclustering.cnn.Summary method) Summary (class in cnnclustering.cnn) summary (cnnclustering.cnn.CNN attribute)

T

time (cnnclustering.cnn.CNNRecord attribute) timed() (in module cnnclustering.cnn)

to_DataFrame() (cnnclustering.cnn.Summary method) trash() (cnnclustering.cnn.Labels method) TypedDataFrame (class in cnnclustering.cnn)