Index

A

addAssignmentRule() (simplesbml.SbmlModel method) addCompartment() (simplesbml.SbmlModel method) addEvent() (simplesbml.SbmlModel method) addInitialAssignment() (simplesbml.SbmlModel method)

addParameter() (simplesbml.SbmlModel method) addRateRule() (simplesbml.SbmlModel method) addReaction() (simplesbml.SbmlModel method) addSpecies() (simplesbml.SbmlModel method)

G

getCompartmentId() (simplesbml.SbmlModel method) getCompartmentIdSpeciesIsIn() (simplesbml.SbmlModel method) getCompartmentVolume() (simplesbml.SbmlModel method) getDocument() (simplesbml.SbmlModel method) getEventAssignment() (simplesbml.SbmlModel method) getEventId() (simplesbml.SbmlModel method) getEventString() (simplesbml.SbmlModel method) getEventTrigger() (simplesbml.SbmlModel method) getEventVariable() (simplesbml.SbmlModel method) getFunctionBody() (simplesbml.SbmlModel method) getFunctionId() (simplesbml.SbmlModel method) getListOfAllSpecies() (simplesbml.SbmlModel method) getListOfArgumentsInUserFunction() (simplesbml.SbmlModel method) getListOfBoundarySpecies() (simplesbml.SbmlModel method) getListOfCompartmentIds() (simplesbml.SbmlModel method) getListOfFloatingSpecies() (simplesbml.SbmlModel method) getListOfFunctionIds() (simplesbml.SbmlModel method) getListOfModifiers() (simplesbml.SbmlModel method) getListOfParameterIds() (simplesbml.SbmlModel method) getListOfReactionIds() (simplesbml.SbmlModel method) getListOfRuleIds() (simplesbml.SbmlModel method) getModel() (simplesbml.SbmlModel method) getModelId() (simplesbml.SbmlModel method) getNthBoundarySpeciesId() (simplesbml.SbmlModel method) getNthFloatingSpeciesId() (simplesbml.SbmlModel method) getNthReactionId() (simplesbml.SbmlModel method)

getNumArgumentsInUserFunction() (simplesbml.SbmlModel method) getNumBoundarySpecies() (simplesbml.SbmlModel method) getNumCompartments() (simplesbml.SbmlModel method) getNumEventAssignments() (simplesbml.SbmlModel method) getNumEvents() (simplesbml.SbmlModel method) getNumFloatingSpecies() (simplesbml.SbmlModel method) getNumFunctionDefinitions() (simplesbml.SbmlModel method) getNumInitialAssignments() (simplesbml.SbmlModel method) getNumModifiers() (simplesbml.SbmlModel method) getNumParameters() (simplesbml.SbmlModel method) getNumProducts() (simplesbml.SbmlModel method) getNumReactants() (simplesbml.SbmlModel method) getNumReactions() (simplesbml.SbmlModel method) getNumRules() (simplesbml.SbmlModel method) getNumSpecies() (simplesbml.SbmlModel method) getParameterId() (simplesbml.SbmlModel method) getParameterValue() (simplesbml.SbmlModel method) getProduct() (simplesbml.SbmlModel method) getProductStoichiometry() (simplesbml.SbmlModel method) getRateLaw() (simplesbml.SbmlModel method) getReactant() (simplesbml.SbmlModel method) getReactantStoichiometry() (simplesbml.SbmlModel method) getRuleId() (simplesbml.SbmlModel method) getRuleRightSide() (simplesbml.SbmlModel method) getRuleType() (simplesbml.SbmlModel method) getSpeciesInitialAmount() (simplesbml.SbmlModel method) getSpeciesInitialConcentration() (simplesbml.SbmlModel method)

I

isAmount() (simplesbml.SbmlModel method) isBoundarySpecies() (simplesbml.SbmlModel method) isConcentration() (simplesbml.SbmlModel method) isFloatingSpecies() (simplesbml.SbmlModel method)

isParameterValueSet() (simplesbml.SbmlModel method) isRuleType_Algebraic() (simplesbml.SbmlModel method) isRuleType_Assignment() (simplesbml.SbmlModel method) isRuleType_Rate() (simplesbml.SbmlModel method) isSpeciesValueSet() (simplesbml.SbmlModel method)

L

loadSBMLFile() (in module simplesbml)

loadSBMLStr() (in module simplesbml)

M

module simplesbml, [1]

S

SbmlModel (class in simplesbml)

simplesbml module, [1]

T

toSBML() (simplesbml.SbmlModel method)

W

writeCode() (in module simplesbml)

writeCodeFromFile() (in module simplesbml) writeCodeFromString() (in module simplesbml)