{CSS} ScaleHD

ScaleHD - Automated Huntington Disease genotyping

@ | ?

Job Label: {instance_label}

    {SAMPLE_LIST}

Welcome to ScaleHD!

Find all your processed samples for {instance_label} on the left.


Click on a sample to the left in order to view the output for that sequence.

Clicking on subheadings will scroll you to the relevant section of ScaleHD output.


Help for navigating this output is found by clicking '?'.
Contact me with comments/questions/threats by pressing '@' at the top right.

If you wish to return to this landing page, you can click the ScaleHD version at the top left.


Summary results for {instance_label}

Here's a brief summary of the genotyping results for this instance of ScaleHD.

Initially, you can see the summary table which displays sample genotypes and confidence. If you wish to inspect a sample in greater detail, you can click the sample ID from the table, or from the list on the left.

Furthermore, you will find allele distribution graphs, for every allele successfully processed in this run of ScaleHD.


{ALLELETABLE}
Sample ID Allele 1 genotype Allele 1 structure Allele 1 confidence Allele 2 genotype Allele 2 structure Allele 2 confidence


ScaleHD Help

Here is where you can find an explanation about how to navigate this ScaleHD HTML output.


Layout

Upon opening the webpage, you are greeted by a grid-style layout. At the top left, the ScaleHD version utilised for your analysis acts as a 'home' button. Down the left-hand side of the webpage, you will find a list of samples that were processed during your run of ScaleHD. Each sample has a unicode icon adjacent to the sample name, which indicates whether ScaleHD could successfully process the sample or not. Within each sample entry, the three ScaleHD sub-stages are listed.


Along the top of the webpage, a header displays information about the currently-active sub-section. Additionally, contact and help links are persistent at the top right.


The remaining panel of the grid layout is the main content view, where data will be displayed. This panel will change to specific sample data when prompted by a mouse click.


Functionality

Upon loading, you are welcomed by a landing page, which shows genotypes for all samples in the processed run, as well as general allele frequency distributions for the ScaleHD run.

{SEQDATA}
{JAVASCRIPT}