Datasets Selection


This option compares proteins in a datasets, using the Root Mean Squared Distance(RMSD).

This option is available in the menu "Analyze/RMSD", which will launch the following window:

The RMSD-IDX window

In the RMSD window there are three panels for settling the comparison process data, first is Datasets panel, where all files are loaded. In the Target panel, shows the file that is used like reference for comparison. It can be selected using () and () buttons; Ultimatelly the last Compare panel, shows the files to compare with the Target. Those files can be selected using (), ("ALL") and () buttons. Also atoms types to compare datasets can be selected.

Atoms Types:

When all needed options are configured, continue clicking the "Calculate" button to start the process.

Configuring the comparison process


Options are provided for comparison tests in the "Advanced" panel.

The Advanced panel RMSD-Ca

The two options contained in the panel are:

The RMSD Interval Window