load_unaligned_seqs¶
- load_unaligned_seqs(filename: Union[str, pathlib.Path], format=None, moltype=None, label_to_name=None, parser_kw=None, info=None, **kw)¶
loads unaligned sequences from file
- Parameters
- filenamestr
path to sequence file
- formatstr
sequence file format, if not specified tries to guess from the path suffix
- moltype
the moltype, eg DNA, PROTEIN, ‘dna’, ‘protein’
- label_to_name
function for converting original name into another name.
- parser_kwdict
optional arguments for the parser
- info
a dict from which to make an info object
- **kw
other keyword arguments passed to SequenceCollection
- Returns
SequenceCollection