Module xi_covutils.matrices.common
Common Constants for substitution matrices
Expand source code
"""
Common Constants for substitution matrices
"""
RESIDUE_ORDER = [
"A", "R", "N", "D", "C",
"Q", "E", "G", "H", "I",
"L", "K", "M", "F", "P",
"S", "T", "W", "Y", "V"
]
"""Residue order in substitution matrices"""
RESIDUE_ORDER_MAP = {
"A": 0,
"R": 1,
"N": 2,
"D": 3,
"C": 4,
"Q": 5,
"E": 6,
"G": 7,
"H": 8,
"I": 9,
"L": 10,
"K": 11,
"M": 12,
"F": 13,
"P": 14,
"S": 15,
"T": 16,
"W": 17,
"Y": 18,
"V": 19
}
"""
Maps aminoacids to a index indicating the position order in the substitution
matrices
"""
Global variables
var RESIDUE_ORDER
-
Residue order in substitution matrices
var RESIDUE_ORDER_MAP
-
Maps aminoacids to a index indicating the position order in the substitution matrices