Module dadi.DFE
Fitting Distributions of Fitness Effects to population genomic data, both single-population and joint.
Expand source code
"""
Fitting Distributions of Fitness Effects to population genomic data, both single-population and joint.
"""
from dadi.DFE.Cache1D_mod import Cache1D
from dadi.DFE.Cache2D_mod import Cache2D, mixture, mixture_symmetric_point_pos
from dadi.DFE import PDFs, DemogSelModels, Plotting
print("If you publish with the dadi DFE code, please cite Gutenkunst et al. (2009) PLoS "
"Genetics and Kim, Huber, and Lohmueller (2017) Genetics "
"(https://doi.org/10.1534/genetics.116.197145).")
Sub-modules
dadi.DFE.Cache1D_mod
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Initially developed by Bernard Kim and published as fitdadi Kim, Huber, Lohmueller (2017) Genetics. Modified version of the script found at: …
dadi.DFE.Cache2D_mod
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Developed by the Gutenkunst group, building off of the fitdadi code.
dadi.DFE.DemogSelModels
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Input models of demography + selection.
dadi.DFE.PDFs
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Probability density functions for defining DFEs.
dadi.DFE.Plotting
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Miscellaneous functions for plotting DFEs