Module dadi.TwoLocus

Fitting models to data summarized by pairs of loci, incorporating both allele frequencies and linkage disequilibrium

Expand source code
"""
Fitting models to data summarized by pairs of loci, incorporating both allele frequencies and linkage disequilibrium
"""
from . import numerics, integration, demographics, inference, plotting, TLSpectrum_mod
TLSpectrum = TLSpectrum_mod.TLSpectrum

Sub-modules

dadi.TwoLocus.TLSpectrum_mod

Contains triallelic Spectrum object

dadi.TwoLocus.demographics
dadi.TwoLocus.inference
dadi.TwoLocus.integration
dadi.TwoLocus.numerics

methods for numerics of two locus diffusion - grids, transition matrices, etc

dadi.TwoLocus.plotting