Index
A
|
B
|
C
|
D
|
F
|
G
|
I
|
L
|
M
|
N
|
P
|
R
|
S
|
T
|
U
|
W
A
append_mids() (in module fluxpyt.solve_mid_networks)
B
bootstrap() (in module fluxpyt.bootstrap)
build_model() (in module fluxpyt.build_model)
C
cal_substrate_mid() (in module fluxpyt.input_substrate_emu)
correct_mids() (in module fluxpyt.solve_mfa_lm)
corrMatGen() (in module fluxpyt.mid_corr)
corrMatGen1() (in module fluxpyt.mid_corr)
create_atm_transition_equations() (in module fluxpyt.create_atm_transition_equations)
create_objective() (in module fluxpyt.priliminary_fba)
D
detect_substrate_emus() (in module fluxpyt.input_substrate_emu)
draw_flux_map() (in module fluxpyt.draw_flux_map)
F
find() (in module fluxpyt.utility)
findMolRxns() (in module fluxpyt.create_atm_transition_equations)
flux_range() (in module fluxpyt.priliminary_fba)
flux_variability() (in module fluxpyt.priliminary_fba)
fluxpyt (module)
fluxpyt.bootstrap (module)
fluxpyt.build_model (module)
fluxpyt.create_atm_transition_equations (module)
fluxpyt.draw_flux_map (module)
fluxpyt.free_flux_null (module)
fluxpyt.glpk_solve (module)
fluxpyt.input_substrate_emu (module)
fluxpyt.main (module)
fluxpyt.make_emu_networks (module)
fluxpyt.mid_corr (module)
fluxpyt.mid_vec_gen (module)
fluxpyt.monte_carlo (module)
fluxpyt.priliminary_fba (module)
fluxpyt.solve_mfa_lm (module)
fluxpyt.solve_mid_networks (module)
fluxpyt.utility (module)
G
genInSubEMU() (in module fluxpyt.input_substrate_emu)
get_coeff() (in module fluxpyt.create_atm_transition_equations)
get_formula() (in module fluxpyt.create_atm_transition_equations)
get_linenumber() (in module fluxpyt.build_model)
get_mids() (in module fluxpyt.solve_mid_networks)
get_new_molecule() (in module fluxpyt.create_atm_transition_equations)
get_null_mat() (in module fluxpyt.free_flux_null)
getAtoms() (in module fluxpyt.mid_corr)
getCoefficients() (in module fluxpyt.mid_corr)
glpk_solve() (in module fluxpyt.glpk_solve)
I
insert_hash() (in module fluxpyt.create_atm_transition_equations)
isletter() (in module fluxpyt.mid_corr)
iter_cb() (in module fluxpyt.solve_mfa_lm)
L
list_network_subs_emus() (in module fluxpyt.input_substrate_emu)
M
main() (in module fluxpyt.main)
make_bounds() (in module fluxpyt.priliminary_fba)
make_networks() (in module fluxpyt.make_emu_networks)
make_objective() (in module fluxpyt.solve_mfa_lm)
make_stoich_matrix() (in module fluxpyt.build_model)
metabolite_list() (in module fluxpyt.build_model)
mid_correct() (in module fluxpyt.mid_corr)
mid_round() (in module fluxpyt.mid_vec_gen)
mid_vec_gen() (in module fluxpyt.mid_vec_gen)
modify_rxn_for_S() (in module fluxpyt.build_model)
monte_carlo() (in module fluxpyt.monte_carlo)
N
nCr() (in module fluxpyt.utility)
num_sort() (in module fluxpyt.create_atm_transition_equations)
P
parse_output() (in module fluxpyt.glpk_solve)
pause() (in module fluxpyt.utility)
priliminary_fba() (in module fluxpyt.priliminary_fba)
prob_func() (in module fluxpyt.solve_mfa_lm)
prod() (in module fluxpyt.utility)
R
read_mfa_model() (in module fluxpyt.build_model)
read_substrate_input() (in module fluxpyt.input_substrate_emu)
residual() (in module fluxpyt.solve_mfa_lm)
rewrite_molecule() (in module fluxpyt.create_atm_transition_equations)
S
size() (in module fluxpyt.utility)
solve_mfa_problem() (in module fluxpyt.solve_mfa_lm)
solve_mid_networks() (in module fluxpyt.solve_mid_networks)
solve_network() (in module fluxpyt.solve_mid_networks)
sort_glpk_solution() (in module fluxpyt.priliminary_fba)
sort_sub_input() (in module fluxpyt.input_substrate_emu)
space() (in module fluxpyt.utility)
split_rxn() (in module fluxpyt.utility)
stepCV() (in module fluxpyt.mid_corr)
sum_matrix() (in module fluxpyt.utility)
sum_row() (in module fluxpyt.mid_vec_gen)
T
test() (in module fluxpyt.create_atm_transition_equations)
(in module fluxpyt.mid_corr)
(in module fluxpyt.mid_vec_gen)
test_model_build() (in module fluxpyt.build_model)
U
update_mids() (in module fluxpyt.solve_mid_networks)
W
write_constraint() (in module fluxpyt.glpk_solve)
write_rxn_full() (in module fluxpyt.create_atm_transition_equations)
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