{% extends "base.html" %} {% block content %}

Sequencing depth and genome coverage report
Chromosome: {{chrom_name}} {% if project %} Project : {{project_name}} {% endif %}

Coverage

The graphics shows the coverage as function of the position in the genome.
Interactive plots are available in the following table. Note that the whole reference is split into sub-regions (500,000 bp length at max). {{ list_submapping }}

Basic stats

The following table gives some basic statistics about the genome coverage. {{ nc_stats }} Here are some definitions used:


Normalized coverage

{{ nc_paragraph }}

Z-Score distribution

{{ bp_paragraph }}

Regions of Interest

Running median is the median computed along the genome using a sliding window. The following tables give regions of interest detected by sequana. Here is some captions:

Low coverage region

{{ lc_paragraph }} {{ low_coverage }}

High coverage region

{{ hc_paragraph }} {{ high_coverage }}
{% if coverage_vs_gc %}

Coverage versus GC

{{ coverage_vs_gc }}
{% endif %} {% endblock %}