General Information

The following table gives you basic statistics about the final assembly. Please click on the sample of interest in the first column to switch from one sample to the other. The default page shows the first sample.

{% for header in summary_header %} {% endfor %} {% for sample, values in summary_results.items() %} {% for value in values %} {% endfor %} {% endfor %}

Sample	{{header}}
{{sample}}	{{value}}

{% for sample, contigs_dict in analysis.items() %}

{{sample}} sample:

Download contig file for {{sample}}: here.

{% if 'bandage_image' in analysis[sample] %}

Graph relation between contigs found before any circularisation.

{% endif %} {% if 'checkm' in analysis[sample] %}

General CheckM results using {{analysis[sample]['genus']}} / {{analysis[sample]['rank']}}

{% for key, value in analysis[sample]['checkm'].items() %} {% endfor %}

{{key}}	{{value}}

{% else %}

checkM not available (not set in the config file?)

{% endif %} {% for contig in contigs_dict['contig_order'] %} {% if 'coverage' in analysis[sample][contig] %}

Sequana coverage for {{contig}}

{% for key, value in analysis[sample][contig]['coverage'].items() %} {% endfor %}

{{key}}	{{value}}

{% elif contig == contigs_dict['contig_order'][0] %}

sequana coverage not available (not set in the config file?)

{% endif %} {% if 'blast' in analysis[sample][contig] %}

Blast results for {{contig}}

{% for title in analysis[sample][contig]['blast'][0].keys() %} {% endfor %} {% for blast in analysis[sample][contig]['blast'] %} {% for value in blast.values() %} {% endfor %} {% endfor %}

{{title}}
{{value}}

{% elif contig == contigs_dict['contig_order'][0] %}

blast results not available (not set in the config file?)

{% endif %} {% endfor %}

{% endfor %}