Index

_

__add__() (gptools.kernel.core.Kernel method) __call__() (gptools.gaussian_process.Constraint method) (gptools.kernel.core.ArbitraryKernel method) (gptools.kernel.core.ChainRuleKernel method) (gptools.kernel.core.Kernel method) (gptools.kernel.core.MaskedKernel method) (gptools.kernel.core.ProductKernel method) (gptools.kernel.core.SumKernel method) (gptools.kernel.gibbs.GibbsFunction1dArb method) (gptools.kernel.gibbs.GibbsKernel1d method) (gptools.kernel.matern.Matern52Kernel method) (gptools.kernel.matern.MaternKernel1d method) (gptools.kernel.noise.DiagonalNoiseKernel method) (gptools.kernel.noise.ZeroKernel method) (gptools.kernel.squared_exponential.SquaredExponentialKernel method) (gptools.kernel.warping.WarpedKernel method) (gptools.kernel.warping.WarpingFunction method) (gptools.mean.MeanFunction method) (gptools.utils.CoreEdgeJointPrior method) (gptools.utils.CoreMidEdgeJointPrior method) (gptools.utils.GammaJointPrior method) (gptools.utils.IndependentJointPrior method) (gptools.utils.JeffreysPrior method) (gptools.utils.JointPrior method) (gptools.utils.LessThanUniformPotential method) (gptools.utils.LinearPrior method) (gptools.utils.LogNormalJointPrior method) (gptools.utils.NormalJointPrior method) (gptools.utils.ProductJointPrior method) (gptools.utils.UniformJointPrior method) (gptools.utils.UniformPrior method) __getattribute__() (gptools.kernel.core.MaskedKernel method) __getitem__() (gptools.utils.CombinedBounds method) (gptools.utils.MaskedBounds method) __invert__() (gptools.utils.CombinedBounds method)

__len__() (gptools.utils.CombinedBounds method) (gptools.utils.MaskedBounds method) __mul__() (gptools.kernel.core.Kernel method) (gptools.utils.JointPrior method) __setattr__() (gptools.kernel.core.MaskedKernel method) __setitem__() (gptools.utils.CombinedBounds method) (gptools.utils.MaskedBounds method)

A

add_data() (gptools.gaussian_process.GaussianProcess method) ArbitraryKernel (class in gptools.kernel.core)

arrow_respond() (in module gptools.gp_utils)

B

beta_cdf_warp() (in module gptools.kernel.warping) BetaWarpedKernel (class in gptools.kernel.warping)

BinaryKernel (class in gptools.kernel.core) bounds (gptools.utils.GammaJointPrior attribute) (gptools.utils.IndependentJointPrior attribute) (gptools.utils.LogNormalJointPrior attribute) (gptools.utils.NormalJointPrior attribute) (gptools.utils.ProductJointPrior attribute)

C

ChainRuleKernel (class in gptools.kernel.core) CombinedBounds (class in gptools.utils) compute_from_MCMC() (gptools.gaussian_process.GaussianProcess method) compute_K_L_alpha_ll() (gptools.gaussian_process.GaussianProcess method) compute_Kij() (gptools.gaussian_process.GaussianProcess method) compute_ll_matrix() (gptools.gaussian_process.GaussianProcess method) compute_stats() (in module gptools.utils)

condense_duplicates() (gptools.gaussian_process.GaussianProcess method) constant() (in module gptools.mean) ConstantMeanFunction (class in gptools.mean) Constraint (class in gptools.gaussian_process) CoreEdgeJointPrior (class in gptools.utils) CoreMidEdgeJointPrior (class in gptools.utils) cubic_bucket_warp() (in module gptools.kernel.gibbs)

D

DiagonalNoiseKernel (class in gptools.kernel.noise) double_tanh_warp() (in module gptools.kernel.gibbs)

draw_sample() (gptools.gaussian_process.GaussianProcess method)

E

enforce_bounds (gptools.kernel.core.BinaryKernel attribute) (gptools.kernel.warping.WarpedKernel attribute)

F

fixed_params (gptools.gaussian_process.GaussianProcess attribute) (gptools.kernel.core.BinaryKernel attribute) (gptools.kernel.warping.WarpedKernel attribute) free_param_bounds (gptools.gaussian_process.GaussianProcess attribute) (gptools.kernel.core.BinaryKernel attribute) (gptools.kernel.core.Kernel attribute) (gptools.kernel.warping.WarpedKernel attribute) (gptools.kernel.warping.WarpingFunction attribute) (gptools.mean.MeanFunction attribute) free_param_idxs (gptools.kernel.core.Kernel attribute) (gptools.kernel.warping.WarpingFunction attribute) (gptools.mean.MeanFunction attribute)

free_param_names (gptools.gaussian_process.GaussianProcess attribute) (gptools.kernel.core.BinaryKernel attribute) (gptools.kernel.core.Kernel attribute) (gptools.kernel.warping.WarpedKernel attribute) (gptools.kernel.warping.WarpingFunction attribute) (gptools.mean.MeanFunction attribute) free_params (gptools.gaussian_process.GaussianProcess attribute) (gptools.kernel.core.Kernel attribute) (gptools.kernel.warping.WarpedKernel attribute) (gptools.kernel.warping.WarpingFunction attribute) (gptools.mean.MeanFunction attribute)

G

GammaJointPrior (class in gptools.utils) gauss_warp_arb() (in module gptools.kernel.gibbs) GaussianProcess (class in gptools.gaussian_process) generate_set_partition_strings() (in module gptools.utils) generate_set_partitions() (in module gptools.utils) GibbsFunction1dArb (class in gptools.kernel.gibbs) GibbsKernel1d (class in gptools.kernel.gibbs) GibbsKernel1dCubicBucket (class in gptools.kernel.gibbs) GibbsKernel1dDoubleTanh (class in gptools.kernel.gibbs) GibbsKernel1dGaussArb (class in gptools.kernel.gibbs) GibbsKernel1dQuinticBucket (class in gptools.kernel.gibbs) GibbsKernel1dTanh (class in gptools.kernel.gibbs) GibbsKernel1dTanhArb (class in gptools.kernel.gibbs) GPArgumentError

gptools (module) gptools.error_handling (module) gptools.gaussian_process (module) gptools.gp_utils (module) gptools.kernel (module) gptools.kernel.core (module) gptools.kernel.gibbs (module) gptools.kernel.matern (module) gptools.kernel.noise (module) gptools.kernel.rational_quadratic (module) gptools.kernel.squared_exponential (module) gptools.kernel.warping (module) gptools.mean (module) gptools.utils (module)

H

hyperprior (gptools.gaussian_process.GaussianProcess attribute)

I

incomplete_bell_poly() (in module gptools.utils) IndependentJointPrior (class in gptools.utils)

interval() (gptools.utils.JeffreysPrior method) (gptools.utils.LinearPrior method) (gptools.utils.UniformPrior method)

J

JeffreysPrior (class in gptools.utils)

JointPrior (class in gptools.utils)

K

Kernel (class in gptools.kernel.core)

L

LessThanUniformPotential (class in gptools.utils) linear() (in module gptools.mean) linear_warp() (in module gptools.kernel.warping) LinearMeanFunction (class in gptools.mean)

LinearPrior (class in gptools.utils) LinearWarpedKernel (class in gptools.kernel.warping) LogNormalJointPrior (class in gptools.utils)

M

MaskedBounds (class in gptools.utils) MaskedKernel (class in gptools.kernel.core) Matern52Kernel (class in gptools.kernel.matern) matern_function() (in module gptools.kernel.matern) MaternKernel (class in gptools.kernel.matern) MaternKernel1d (class in gptools.kernel.matern)

MaternKernelArb (class in gptools.kernel.matern) MeanFunction (class in gptools.mean) mtanh() (in module gptools.mean) mtanh_profile() (in module gptools.mean) MtanhMeanFunction1d (class in gptools.mean)

N

NormalJointPrior (class in gptools.utils) nu (gptools.kernel.matern.MaternKernel attribute) (gptools.kernel.matern.MaternKernelArb attribute)

num_dim (gptools.gaussian_process.GaussianProcess attribute) num_free_params (gptools.kernel.core.Kernel attribute) (gptools.kernel.warping.WarpingFunction attribute) (gptools.mean.MeanFunction attribute)

O

optimize_hyperparameters() (gptools.gaussian_process.GaussianProcess method)

P

parallel_compute_ll_matrix() (in module gptools.gp_utils) param_bounds (gptools.gaussian_process.GaussianProcess attribute) (gptools.kernel.core.Kernel attribute) (gptools.kernel.warping.WarpingFunction attribute) (gptools.mean.MeanFunction attribute) param_names (gptools.gaussian_process.GaussianProcess attribute) (gptools.kernel.warping.WarpedKernel attribute) params (gptools.gaussian_process.GaussianProcess attribute) (gptools.kernel.core.BinaryKernel attribute) (gptools.kernel.warping.WarpedKernel attribute) plot() (gptools.gaussian_process.GaussianProcess method) plot_sampler() (in module gptools.utils)

powerset() (in module gptools.utils) predict() (gptools.gaussian_process.GaussianProcess method) predict_MCMC() (gptools.gaussian_process.GaussianProcess method) ProductJointPrior (class in gptools.utils) ProductKernel (class in gptools.kernel.core)

Q

quintic_bucket_warp() (in module gptools.kernel.gibbs)

R

random_draw() (gptools.utils.CoreEdgeJointPrior method) (gptools.utils.CoreMidEdgeJointPrior method) (gptools.utils.GammaJointPrior method) (gptools.utils.IndependentJointPrior method) (gptools.utils.JointPrior method) (gptools.utils.LogNormalJointPrior method) (gptools.utils.NormalJointPrior method) (gptools.utils.ProductJointPrior method) (gptools.utils.UniformJointPrior method) RationalQuadraticKernel (class in gptools.kernel.rational_quadratic)

remove_outliers() (gptools.gaussian_process.GaussianProcess method) rvs() (gptools.utils.UniformPrior method)

S

sample_hyperparameter_posterior() (gptools.gaussian_process.GaussianProcess method) set_hyperparams() (gptools.kernel.core.BinaryKernel method) (gptools.kernel.core.Kernel method) (gptools.kernel.warping.WarpedKernel method) (gptools.kernel.warping.WarpingFunction method) (gptools.mean.MeanFunction method) slice_plot() (in module gptools.gp_utils)

SquaredExponentialKernel (class in gptools.kernel.squared_exponential) SumKernel (class in gptools.kernel.core) summarize_sampler() (in module gptools.utils)

T

tanh_warp() (in module gptools.kernel.gibbs)

tanh_warp_arb() (in module gptools.kernel.gibbs)

U

UniformJointPrior (class in gptools.utils) UniformPrior (class in gptools.utils) unique_rows() (in module gptools.utils)

univariate_envelope_plot() (in module gptools.utils) update_hyperparameters() (gptools.gaussian_process.GaussianProcess method)

W

WarpedKernel (class in gptools.kernel.warping) WarpingFunction (class in gptools.kernel.warping)

wrap_fmin_slsqp() (in module gptools.utils)

Z

ZeroKernel (class in gptools.kernel.noise)