{% extends "layout.html" %} {% from "variants/utils.html" import compounds_table %} {% from "utils.html" import flash_messages %} {% block title %} {{ super() }} - {{ institute.display_name }} - {{ case.display_name }} - {{ form.variant_type.data|capitalize }} variants {% endblock %} {% block top_nav %} {{ super() }}
  • Institutes
  • {{ institute.display_name }}
  • {{ case.display_name }}
  • {{ form.variant_type.data|capitalize }} SNV and INDELs
  • {% endblock %} {% block top_nav_right %}
  • Reset filters
  • {{ super() }} {% endblock %} {% block content %}
    {{ filters_form() }}
    {{ flash_messages() }}
    {% for variant in variants %} {% else %} {% endfor %}
    Rank Score Chr. Gene 1000G CADD Gene annotation Func. annotation Inheritance model
    {{ cell_rank(variant) }} {{ variant.rank_score|int }} {{ variant.chromosome }} {{ cell_gene(variant) }} {{ cell_1000g(variant) }} {{ cell_cadd(variant) }} {{ variant.region_annotations|join(', ') }} {{ variant.functional_annotations|join(', ') }} {{ cell_models(variant) }}
    No matching variants
    {{ footer() }}
    {% endblock %} {% macro cell_rank(variant) %} {{ variant.variant_rank }} {% if variant.manual_rank %} {{ variant.manual_rank }} {% elif variant.has_comments %} * {% endif %} {% endmacro %} {% macro cell_gene(variant) %} {% for gene in variant.genes %} {{ gene.hgnc_symbol or gene.hgnc_id }} {% endfor %} {% endmacro %} {% macro cell_1000g(variant) %}
    {{ variant.thousand_genomes_frequency|human_decimal if variant.thousand_genomes_frequency }}
    {% endmacro %} {% macro cell_cadd(variant) %}
    {{ variant.cadd_score }}
    {% endmacro %} {% macro cell_models(variant) %} {% for model in (variant.genetic_models or []) %}
    {{ model }}
    {% endfor %} {% if variant.compounds %} Compounds {% endif %} {% endmacro %} {% macro footer() %}
    {% if more_variants %} Next page {% else %} No more variants to display {% endif %}
    {% endmacro %} {% macro filters_form() %}
    {{ form.csrf_token }} {{ form.variant_type() }}
    {{ form.gene_panels.label(class="control-label") }} {{ form.gene_panels(class="form-control") }}
    {{ form.region_annotations.label(class="control-label") }} {{ form.region_annotations(class="form-control") }}
    {{ form.functional_annotations.label(class="control-label") }} {{ form.functional_annotations(class="form-control") }}
    {{ form.genetic_models.label(class="control-label") }} {{ form.genetic_models(class="form-control") }}
    {{ form.hgnc_symbols.label(class="control-label") }} {{ form.hgnc_symbols(class="form-control") }}
    {{ form.cadd_score.label(class="control-label") }} {{ form.cadd_score(class="form-control") }}
    {{ form.cadd_inclusive.label(class="control-label") }}
    {{ form.cadd_inclusive() }}
    {{ form.clinsig.label(class="control-label") }} {{ form.clinsig(class="form-control") }}
    {{ form.thousand_genomes_frequency.label(class="control-label") }} {{ form.thousand_genomes_frequency(class="form-control") }}
    {{ form.exac_frequency.label(class="control-label") }} {{ form.exac_frequency(class="form-control") }}
    {% endmacro %} {% block scripts %} {{ super() }} {% endblock %}