Index

A

add_field() (pyphasefield.simulation.Simulation method) add_nuclei() (in module pyphasefield.Engines.NComponent)

AnisoDorrGPU (class in pyphasefield.Engines.AnisoDorrGPU) apply_boundary_conditions() (in module pyphasefield.ppf_gpu_utils) (pyphasefield.simulation.Simulation method)

C

CahnAllen (class in pyphasefield.Engines.CahnAllen) CahnHilliard (class in pyphasefield.Engines.CahnHilliard)

compute_tdb_energy_nc() (in module pyphasefield.Engines.NComponent) compute_tdb_energy_nc_rev() (in module pyphasefield.Engines.NComponent) CSVtoXDMF() (in module pyphasefield.ppf_utils)

D

data() (pyphasefield.ppf_utils.XDMFLoader method) default_value() (pyphasefield.simulation.Simulation method) Diffusion (class in pyphasefield.Engines.Diffusion) diffusion_matrix_1d() (in module pyphasefield.Engines.Diffusion)

diffusion_matrix_2d() (in module pyphasefield.Engines.Diffusion) diffusion_matrix_3d() (in module pyphasefield.Engines.Diffusion) DiffusionGPU (class in pyphasefield.Engines.DiffusionGPU) discretization_NComponent() (in module pyphasefield.Engines.NComponent) divagradb() (in module pyphasefield.Engines.NComponent)

E

engine_AnisoDorrGPU() (in module pyphasefield.Engines.AnisoDorrGPU) engine_CahnAllenCrankNicolson2D_ADI() (in module pyphasefield.Engines.CahnAllen) engine_CahnAllenExplicit() (in module pyphasefield.Engines.CahnAllen) engine_CahnAllenIMEX1D() (in module pyphasefield.Engines.CahnAllen) engine_CahnAllenImplicit1D() (in module pyphasefield.Engines.CahnAllen) engine_CahnAllenImplicit1D_GMRES() (in module pyphasefield.Engines.CahnAllen) engine_CahnAllenImplicit2D_ADI() (in module pyphasefield.Engines.CahnAllen) engine_CahnAllenImplicit2D_ADI_GMRES() (in module pyphasefield.Engines.CahnAllen) engine_CahnAllenImplicit2D_GMRES() (in module pyphasefield.Engines.CahnAllen) engine_CahnAllenImplicit3D_ADI() (in module pyphasefield.Engines.CahnAllen) engine_CahnHilliardCrankNicolson1D() (in module pyphasefield.Engines.CahnHilliard) engine_CahnHilliardCrankNicolson1D_GMRES() (in module pyphasefield.Engines.CahnHilliard) engine_CahnHilliardCrankNicolson2D_ADI() (in module pyphasefield.Engines.CahnHilliard) engine_CahnHilliardExplicit() (in module pyphasefield.Engines.CahnHilliard) engine_CahnHilliardIMEX1D() (in module pyphasefield.Engines.CahnHilliard) engine_CahnHilliardImplicit1D() (in module pyphasefield.Engines.CahnHilliard) engine_CahnHilliardImplicit1D_GMRES() (in module pyphasefield.Engines.CahnHilliard) engine_CahnHilliardImplicit2D_ADI() (in module pyphasefield.Engines.CahnHilliard) engine_CahnHilliardImplicit2D_ADI_GMRES() (in module pyphasefield.Engines.CahnHilliard) engine_CahnHilliardImplicit2D_GMRES() (in module pyphasefield.Engines.CahnHilliard) engine_CahnHilliardImplicit3D_ADI() (in module pyphasefield.Engines.CahnHilliard) engine_CrankNicolsonDiffusion1D() (in module pyphasefield.Engines.Diffusion) engine_CrankNicolsonDiffusion1D_GMRES() (in module pyphasefield.Engines.Diffusion) engine_CrankNicolsonDiffusion2D() (in module pyphasefield.Engines.Diffusion) engine_CrankNicolsonDiffusion2D_ADI() (in module pyphasefield.Engines.Diffusion)

engine_CrankNicolsonDiffusion2D_ADI_GMRES() (in module pyphasefield.Engines.Diffusion) engine_CrankNicolsonDiffusion2D_GMRES() (in module pyphasefield.Engines.Diffusion) engine_CrankNicolsonDiffusion3D() (in module pyphasefield.Engines.Diffusion) engine_CrankNicolsonDiffusion3D_ADI() (in module pyphasefield.Engines.Diffusion) engine_CrankNicolsonDiffusion3D_ADI_GMRES() (in module pyphasefield.Engines.Diffusion) engine_CrankNicolsonDiffusion3D_GMRES() (in module pyphasefield.Engines.Diffusion) engine_DiffusionGPU() (in module pyphasefield.Engines.Diffusion) (in module pyphasefield.Engines.DiffusionGPU) engine_ExplicitDiffusion() (in module pyphasefield.Engines.Diffusion) engine_ImplicitDiffusion1D() (in module pyphasefield.Engines.Diffusion) engine_ImplicitDiffusion1D_GMRES() (in module pyphasefield.Engines.Diffusion) engine_ImplicitDiffusion2D() (in module pyphasefield.Engines.Diffusion) engine_ImplicitDiffusion2D_ADI() (in module pyphasefield.Engines.Diffusion) engine_ImplicitDiffusion2D_ADI_GMRES() (in module pyphasefield.Engines.Diffusion) engine_ImplicitDiffusion2D_GMRES() (in module pyphasefield.Engines.Diffusion) engine_ImplicitDiffusion3D() (in module pyphasefield.Engines.Diffusion) engine_ImplicitDiffusion3D_ADI() (in module pyphasefield.Engines.Diffusion) engine_ImplicitDiffusion3D_ADI_GMRES() (in module pyphasefield.Engines.Diffusion) engine_ImplicitDiffusion3D_GMRES() (in module pyphasefield.Engines.Diffusion) engine_NComponent_ADI() (in module pyphasefield.Engines.NComponent) engine_NComponent_AnisoM() (in module pyphasefield.Engines.NComponent) engine_NComponent_Explicit() (in module pyphasefield.Engines.NComponent) engine_NComponent_FrozenOrientation() (in module pyphasefield.Engines.NComponent) engine_params_NComponent() (in module pyphasefield.Engines.NComponent) engine_Warren1995() (in module pyphasefield.Engines.Warren1995)

F

Field (class in pyphasefield.field) find_Pn() (in module pyphasefield.Engines.NComponent)

functional_CahnAllen() (in module pyphasefield.Engines.CahnAllen) functional_CahnHilliard() (in module pyphasefield.Engines.CahnHilliard) functional_NComponent() (in module pyphasefield.Engines.NComponent)

G

gaq() (in module pyphasefield.Engines.NComponent) generate_python_script() (pyphasefield.simulation.Simulation method) get_all_cells() (pyphasefield.field.Field method) get_cell_spacing() (pyphasefield.simulation.Simulation method) get_cells() (pyphasefield.field.Field method) get_dimensions() (pyphasefield.simulation.Simulation method) get_dt() (pyphasefield.simulation.Simulation method) get_dx() (pyphasefield.simulation.Simulation method) get_framework() (pyphasefield.simulation.Simulation method) get_thermodynamics() (in module pyphasefield.Engines.AnisoDorrGPU) (in module pyphasefield.Engines.NCGPU) (in module pyphasefield.Engines.NCGPU_new)

get_time_step_counter() (pyphasefield.simulation.Simulation method) get_time_step_length() (pyphasefield.simulation.Simulation method) grad2() (in module pyphasefield.Engines.NComponent) grad_c() (in module pyphasefield.Engines.NComponent) grad_l() (in module pyphasefield.Engines.NComponent) grad_r() (in module pyphasefield.Engines.NComponent) gradient_cell() (pyphasefield.field.Field method) gradient_face_left() (pyphasefield.field.Field method) gradient_face_right() (pyphasefield.field.Field method) gradx() (in module pyphasefield.Engines.Warren1995) gradxx() (in module pyphasefield.Engines.Warren1995) grady() (in module pyphasefield.Engines.Warren1995) gradyy() (in module pyphasefield.Engines.Warren1995)

I

implicit_matrix_1d() (in module pyphasefield.Engines.CahnAllen) (in module pyphasefield.Engines.CahnHilliard) implicit_matrix_2d() (in module pyphasefield.Engines.CahnAllen) (in module pyphasefield.Engines.CahnHilliard) increment_time_step_counter() (pyphasefield.simulation.Simulation method) init_AnisoDorrGPU() (in module pyphasefield.Engines.AnisoDorrGPU) init_boundary_conditions() (pyphasefield.simulation.Simulation method) init_fields() (pyphasefield.Engines.AnisoDorrGPU.AnisoDorrGPU method) (pyphasefield.Engines.CahnAllen.CahnAllen method) (pyphasefield.Engines.CahnHilliard.CahnHilliard method) (pyphasefield.Engines.Diffusion.Diffusion method) (pyphasefield.Engines.DiffusionGPU.DiffusionGPU method) (pyphasefield.Engines.NCGPU.NCGPU method) (pyphasefield.Engines.NCGPU_new.NCGPU_new method) (pyphasefield.Engines.Template.Template method) (pyphasefield.Engines.Warren1995.Warren1995 method) (pyphasefield.simulation.Simulation method) init_NComponent() (in module pyphasefield.Engines.NComponent) init_sim_CahnAllen() (pyphasefield.simulation.Simulation method) init_sim_CahnHilliard() (pyphasefield.simulation.Simulation method)

init_sim_Diffusion() (pyphasefield.simulation.Simulation method) init_sim_DiffusionGPU() (pyphasefield.simulation.Simulation method) init_sim_NCGPU() (pyphasefield.simulation.Simulation method) init_sim_NComponent() (pyphasefield.simulation.Simulation method) init_sim_Warren1995() (pyphasefield.simulation.Simulation method) init_tdb_parameters() (in module pyphasefield.Engines.NComponent) init_tdb_params() (pyphasefield.Engines.AnisoDorrGPU.AnisoDorrGPU method) (pyphasefield.Engines.NCGPU.NCGPU method) (pyphasefield.Engines.NCGPU_new.NCGPU_new method) (pyphasefield.Engines.Template.Template method) (pyphasefield.simulation.Simulation method) init_temperature_field() (pyphasefield.simulation.Simulation method) init_Warren1995() (in module pyphasefield.Engines.Warren1995) initialize_fields_and_imported_data() (pyphasefield.Engines.AnisoDorrGPU.AnisoDorrGPU method) (pyphasefield.Engines.CahnAllen.CahnAllen method) (pyphasefield.Engines.CahnHilliard.CahnHilliard method) (pyphasefield.Engines.Diffusion.Diffusion method) (pyphasefield.Engines.DiffusionGPU.DiffusionGPU method) (pyphasefield.Engines.Template.Template method) (pyphasefield.Engines.Warren1995.Warren1995 method) (pyphasefield.simulation.Simulation method)

J

just_before_simulating() (pyphasefield.Engines.AnisoDorrGPU.AnisoDorrGPU method) (pyphasefield.Engines.CahnAllen.CahnAllen method) (pyphasefield.Engines.CahnHilliard.CahnHilliard method) (pyphasefield.Engines.Diffusion.Diffusion method) (pyphasefield.Engines.DiffusionGPU.DiffusionGPU method) (pyphasefield.Engines.NCGPU.NCGPU method) (pyphasefield.Engines.NCGPU_new.NCGPU_new method) (pyphasefield.Engines.Template.Template method) (pyphasefield.Engines.Warren1995.Warren1995 method) (pyphasefield.simulation.Simulation method)

L

laplacian() (pyphasefield.field.Field method)

load_simulation() (pyphasefield.simulation.Simulation method)

M

make_seed() (in module pyphasefield.Engines.AnisoDorrGPU) (in module pyphasefield.Engines.NCGPU) (in module pyphasefield.Engines.NCGPU_new) (in module pyphasefield.Engines.NComponent) (in module pyphasefield.ppf_utils) module pyphasefield pyphasefield.Engines pyphasefield.Engines.AnisoDorrGPU pyphasefield.Engines.CahnAllen pyphasefield.Engines.CahnHilliard pyphasefield.Engines.Diffusion pyphasefield.Engines.DiffusionGPU pyphasefield.Engines.NCGPU pyphasefield.Engines.NCGPU_new pyphasefield.Engines.NComponent pyphasefield.Engines.Template pyphasefield.Engines.Warren1995 pyphasefield.field pyphasefield.ppf_gpu_utils pyphasefield.ppf_utils pyphasefield.simulation pyphasefield.tests pyphasefield.tests.test_Diffusion pyphasefield.tests.test_NComponent pyphasefield.tests.test_SaveLoad pyphasefield.tests.test_Warren1995

N

NCGPU (class in pyphasefield.Engines.NCGPU) NCGPU_new (class in pyphasefield.Engines.NCGPU_new)

npvalue() (in module pyphasefield.Engines.NCGPU) (in module pyphasefield.Engines.NCGPU_new) (in module pyphasefield.Engines.NComponent)

P

plot_all_fields() (pyphasefield.simulation.Simulation method) plot_field() (pyphasefield.simulation.Simulation method) plot_simulation() (pyphasefield.simulation.Simulation method) progress_bar() (pyphasefield.simulation.Simulation method) pyphasefield module pyphasefield.Engines module pyphasefield.Engines.AnisoDorrGPU module pyphasefield.Engines.CahnAllen module pyphasefield.Engines.CahnHilliard module pyphasefield.Engines.Diffusion module pyphasefield.Engines.DiffusionGPU module pyphasefield.Engines.NCGPU module pyphasefield.Engines.NCGPU_new module pyphasefield.Engines.NComponent module

pyphasefield.Engines.Template module pyphasefield.Engines.Warren1995 module pyphasefield.field module pyphasefield.ppf_gpu_utils module pyphasefield.ppf_utils module pyphasefield.simulation module pyphasefield.tests module pyphasefield.tests.test_Diffusion module pyphasefield.tests.test_NComponent module pyphasefield.tests.test_SaveLoad module pyphasefield.tests.test_Warren1995 module

Q

quaternion_implicit_matrix() (in module pyphasefield.Engines.NComponent)

quaternion_implicit_method() (in module pyphasefield.Engines.NComponent)

R

renormalize() (in module pyphasefield.Engines.NComponent)

retrieve_fields_from_GPU() (in module pyphasefield.ppf_gpu_utils) (pyphasefield.simulation.Simulation method)

S

save_simulation() (pyphasefield.Engines.NCGPU_new.NCGPU_new method) (pyphasefield.simulation.Simulation method) send_fields_to_GPU() (in module pyphasefield.ppf_gpu_utils) (pyphasefield.simulation.Simulation method) set_autosave_flag() (pyphasefield.simulation.Simulation method) set_autosave_rate() (pyphasefield.simulation.Simulation method) set_autosave_save_images_flag() (pyphasefield.simulation.Simulation method) set_boundary_conditions() (pyphasefield.simulation.Simulation method) set_cell_spacing() (pyphasefield.simulation.Simulation method) set_debug_mode_flag() (pyphasefield.simulation.Simulation method) set_dimensions() (pyphasefield.simulation.Simulation method) set_dt() (pyphasefield.simulation.Simulation method) set_dx() (pyphasefield.simulation.Simulation method) set_framework() (pyphasefield.simulation.Simulation method) set_save_path() (pyphasefield.simulation.Simulation method) set_tdb_components() (pyphasefield.simulation.Simulation method) set_tdb_container() (pyphasefield.simulation.Simulation method) set_tdb_path() (pyphasefield.simulation.Simulation method) set_tdb_phases() (pyphasefield.simulation.Simulation method) set_temperature_dTdt() (pyphasefield.simulation.Simulation method) set_temperature_dTdx() (pyphasefield.simulation.Simulation method) set_temperature_dTdy() (pyphasefield.simulation.Simulation method)

set_temperature_dTdz() (pyphasefield.simulation.Simulation method) set_temperature_initial_T() (pyphasefield.simulation.Simulation method) set_temperature_path() (pyphasefield.simulation.Simulation method) set_temperature_type() (pyphasefield.simulation.Simulation method) set_temperature_units() (pyphasefield.simulation.Simulation method) set_time_step_counter() (pyphasefield.simulation.Simulation method) set_time_step_length() (pyphasefield.simulation.Simulation method) set_user_data() (pyphasefield.simulation.Simulation method) simulate() (pyphasefield.simulation.Simulation method) Simulation (class in pyphasefield.simulation) simulation_loop() (pyphasefield.Engines.AnisoDorrGPU.AnisoDorrGPU method) (pyphasefield.Engines.CahnAllen.CahnAllen method) (pyphasefield.Engines.CahnHilliard.CahnHilliard method) (pyphasefield.Engines.Diffusion.Diffusion method) (pyphasefield.Engines.DiffusionGPU.DiffusionGPU method) (pyphasefield.Engines.NCGPU.NCGPU method) (pyphasefield.Engines.NCGPU_new.NCGPU_new method) (pyphasefield.Engines.Template.Template method) (pyphasefield.Engines.Warren1995.Warren1995 method) (pyphasefield.simulation.Simulation method) successfully_imported_numba() (in module pyphasefield.ppf_utils) successfully_imported_pycalphad() (in module pyphasefield.ppf_utils)

T

TDBContainer (class in pyphasefield.ppf_utils) teardown_module() (in module pyphasefield.tests.test_SaveLoad) Template (class in pyphasefield.Engines.Template) test_1_saving() (in module pyphasefield.tests.test_SaveLoad) test_2_loading_step_number() (in module pyphasefield.tests.test_SaveLoad) test_3_loading_relative_path() (in module pyphasefield.tests.test_SaveLoad) test_4_loading_absolute_path() (in module pyphasefield.tests.test_SaveLoad) test_diffusion_CrankNicolson1D() (in module pyphasefield.tests.test_Diffusion) test_diffusion_CrankNicolson1D_GMRES() (in module pyphasefield.tests.test_Diffusion) test_diffusion_CrankNicolson2D() (in module pyphasefield.tests.test_Diffusion) test_diffusion_CrankNicolson2D_ADI() (in module pyphasefield.tests.test_Diffusion) test_diffusion_CrankNicolson2D_ADI_GMRES() (in module pyphasefield.tests.test_Diffusion) test_diffusion_CrankNicolson2D_GMRES() (in module pyphasefield.tests.test_Diffusion) test_diffusion_CrankNicolson3D() (in module pyphasefield.tests.test_Diffusion) test_diffusion_CrankNicolson3D_ADI() (in module pyphasefield.tests.test_Diffusion) test_diffusion_CrankNicolson3D_ADI_GMRES() (in module pyphasefield.tests.test_Diffusion) test_diffusion_CrankNicolson3D_GMRES() (in module pyphasefield.tests.test_Diffusion)

test_diffusion_default1dexplicit() (in module pyphasefield.tests.test_Diffusion) test_diffusion_default2dexplicit() (in module pyphasefield.tests.test_Diffusion) test_diffusion_default3dexplicit() (in module pyphasefield.tests.test_Diffusion) test_diffusion_Implicit1D() (in module pyphasefield.tests.test_Diffusion) test_diffusion_Implicit1D_GMRES() (in module pyphasefield.tests.test_Diffusion) test_diffusion_Implicit2D() (in module pyphasefield.tests.test_Diffusion) test_diffusion_Implicit2D_ADI() (in module pyphasefield.tests.test_Diffusion) test_diffusion_Implicit2D_ADI_GMRES() (in module pyphasefield.tests.test_Diffusion) test_diffusion_Implicit2D_GMRES() (in module pyphasefield.tests.test_Diffusion) test_diffusion_Implicit3D() (in module pyphasefield.tests.test_Diffusion) test_diffusion_Implicit3D_ADI() (in module pyphasefield.tests.test_Diffusion) test_diffusion_Implicit3D_ADI_GMRES() (in module pyphasefield.tests.test_Diffusion) test_diffusion_Implicit3D_GMRES() (in module pyphasefield.tests.test_Diffusion) test_ncomponent() (in module pyphasefield.tests.test_NComponent) test_ncomponent_1d() (in module pyphasefield.tests.test_NComponent) test_ncomponent_1d_actual() (in module pyphasefield.tests.test_NComponent) test_ncomponent_very_small() (in module pyphasefield.tests.test_NComponent) test_warren1995() (in module pyphasefield.tests.test_Warren1995)

U

update_temperature_field() (in module pyphasefield.ppf_gpu_utils) (pyphasefield.simulation.Simulation method)

W

Warren1995 (class in pyphasefield.Engines.Warren1995)

X

XDMFLoader (class in pyphasefield.ppf_utils)