E.coli core DFBA model
Model version: 7
TOP model
Main comp DFBA model by combining fba, update and bounds model with additional kinetics in the top model.
Description
This is a metabolism model of Escherichia coli str. K-12 substr. MG1655 in SBML format.
Terms of use
Redistribution and use of any part of this model from BiGG Models knowledge-base, with or without modification, are permitted provided that the following conditions are met:
- Redistributions of this SBML file must retain the above copyright notice, this list of conditions and the following disclaimer.
- Redistributions in a different form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution.
For specific licensing terms about this particular model and regulations of commercial use, see this model in BiGG Models knowledge-base.
References
When using content from BiGG Models knowledge-base in your research works, please cite- King ZA, Lu JS, Dräger A, Miller PC, Federowicz S, Lerman JA, Ebrahim A, Palsson BO, and Lewis NE. (2015).
- BiGG Models: A platform for integrating, standardizing, and sharing genome-scale models. Nucl Acids Res. doi:10.1093/nar/gkv1049
Model : ecoli_top_flat
CreatorMatthias, Koenig, Humboldt University Berlin, konigmatt@googlemail.com
Created: 2017-06-12 17:02
Modified: 2017-06-12 17:02
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type | FunctionDefinitions [2] | name | math | sbo | cvterm |
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FunctionDefinition | bounds__max
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min | |||
FunctionDefinition | bounds__min
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max |
type | UnitDefinitions [14] | name | units | sbo | cvterm |
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UnitDefinition | h
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UnitDefinition | g
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UnitDefinition | m
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UnitDefinition | m2
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UnitDefinition | l
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UnitDefinition | mmol
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UnitDefinition | per_h
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UnitDefinition | mmol_per_h
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UnitDefinition | mmol_per_hg
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UnitDefinition | mmol_per_l
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UnitDefinition | l_per_mmol
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UnitDefinition | g_per_l
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UnitDefinition | g_per_mmol
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UnitDefinition | fba__mmol_per_gDW_per_hr
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type | Compartments [3] | name | size | constant | spatial dimensions | units | derived units | sbo | cvterm |
---|---|---|---|---|---|---|---|---|---|
Compartment | bioreactor
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bioreactor | 1.0 | T | 3 | l | |||
Compartment | fba__c fba___4b1e4f0f-bcca-42b1-b7d0-484ec9bbf3b6
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cytosol | T | l | |||||
Compartment | fba__e fba__cb207f38-8131-42d4-a528-217b1863e93a
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extracellular space | T | l |
type | Species [95] | name | compartment | boundary condition | constant | initial amount | initial concentration | substance units | derived units | sbo | cvterm |
---|---|---|---|---|---|---|---|---|---|---|---|
Species | mal__L_e
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L-Malate | bioreactor | F | F | 1.0 | mmol | ||||
Species | acald_e
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Acetaldehyde | bioreactor | F | F | 1.0 | mmol | ||||
Species | pyr_e
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Pyruvate | bioreactor | F | F | 1.0 | mmol | ||||
Species | glc__D_e
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D-Glucose | bioreactor | F | F | 20.0 | mmol | ||||
Species | etoh_e
|
Ethanol | bioreactor | F | F | 1.0 | mmol | ||||
Species | nh4_e
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Ammonium | bioreactor | F | F | 1.0 | mmol | ||||
Species | h2o_e
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H2O | bioreactor | F | F | 20.0 | mmol | ||||
Species | ac_e
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Acetate | bioreactor | F | F | 1.0 | mmol | ||||
Species | akg_e
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2-Oxoglutarate | bioreactor | F | F | 1.0 | mmol | ||||
Species | co2_e
|
CO2 | bioreactor | F | F | 1.0 | mmol | ||||
Species | lac__D_e
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D-Lactate | bioreactor | F | F | 1.0 | mmol | ||||
Species | fum_e
|
Fumarate | bioreactor | F | F | 1.0 | mmol | ||||
Species | fru_e
|
D-Fructose | bioreactor | F | F | 1.0 | mmol | ||||
Species | for_e
|
Formate | bioreactor | F | F | 1.0 | mmol | ||||
Species | gln__L_e
|
L-Glutamine | bioreactor | F | F | 10.0 | mmol | ||||
Species | succ_e
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Succinate | bioreactor | F | F | 1.0 | mmol | ||||
Species | h_e
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H+ | bioreactor | F | F | 1.0 | mmol | ||||
Species | pi_e
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Phosphate | bioreactor | F | F | 1.0 | mmol | ||||
Species | X
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biomass | bioreactor | F | F | 0.001 | mmol | ||||
Species | glu__L_e
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L-Glutamate | bioreactor | F | F | 1.0 | mmol | ||||
Species | o2_e
|
O2 | bioreactor | F | F | 1.0 | mmol | ||||
Species | dummy_S
|
dummy_S | bioreactor | F | F | 0.0 | mmol | ||||
Species | fba__M_13dpg_c fba__M_13dpg_c
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3-Phospho-D-glyceroyl phosphateC3H4O10P2 |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__M_2pg_c fba__M_2pg_c
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D-Glycerate 2-phosphateC3H4O7P |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__M_3pg_c fba__M_3pg_c
|
3-Phospho-D-glycerateC3H4O7P |
fba__c | F | F | 0.0 | mmol | BQB_IS 3pg; 312944760; cpd00169; MNXM126; C00197; C00597; HMDB00807; HMDB60180; CHEBI:11879; CHEBI:11880; CHEBI:11882; CHEBI:12987; CHEBI:1657; CHEBI:1659; CHEBI:17050; CHEBI:17794; CHEBI:21029; CHEBI:24345; CHEBI:40016; CHEBI:57998; CHEBI:58272; UPC00197; UPC00597; META:G3P; META:TRANS-RXN0-203; MNXR2506 |
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Species | fba__M_6pgc_c fba__M_6pgc_c
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6-Phospho-D-gluconateC6H10O10P |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__M_6pgl_c fba__M_6pgl_c
|
6-phospho-D-glucono-1,5-lactoneC6H9O9P |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__ac_c fba__M_ac_c
|
AcetateC2H3O2 |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__ac_e fba__M_ac_e
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AcetateC2H3O2 |
fba__e | F | F | 0.0 | mmol | ||||
Species | fba__acald_c fba__M_acald_c
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AcetaldehydeC2H4O |
fba__c | F | F | 0.0 | mmol | BQB_IS acald; 312944817; cpd00071; MNXM75; C00084; HMDB00990; CHEBI:13703; CHEBI:15343; CHEBI:22158; CHEBI:2383; CHEBI:40533; UPC00084; META:ACETALD; c0160; MNXR3241 |
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Species | fba__acald_e fba__M_acald_e
|
AcetaldehydeC2H4O |
fba__e | F | F | 0.0 | mmol | BQB_IS acald; 312944817; cpd00071; MNXM75; C00084; HMDB00990; CHEBI:13703; CHEBI:15343; CHEBI:22158; CHEBI:2383; CHEBI:40533; UPC00084; META:ACETALD; c0160; MNXR3241 |
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Species | fba__accoa_c fba__M_accoa_c
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Acetyl-CoAC23H34N7O17P3S |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__acon_C_c fba__M_acon_C_c
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Cis-AconitateC6H3O6 |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__actp_c fba__M_actp_c
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Acetyl phosphateC2H3O5P |
fba__c | F | F | 0.0 | mmol | BQB_IS actp; 312944839; cpd00196; MNXM280; C00227; HMDB01494; CHEBI:13711; CHEBI:15350; CHEBI:22191; CHEBI:2407; CHEBI:46262; UPC00227; META:ACETYL-P; MNXR82588 |
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Species | fba__adp_c fba__M_adp_c
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ADPC10H12N5O10P2 |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__akg_c fba__M_akg_c
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2-OxoglutarateC5H4O5 |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__akg_e fba__M_akg_e
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2-OxoglutarateC5H4O5 |
fba__e | F | F | 0.0 | mmol | ||||
Species | fba__amp_c fba__M_amp_c
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AMPC10H12N5O7P |
fba__c | F | F | 0.0 | mmol | BQB_IS amp; 312944873; cpd00018; MNXM14; C00020; D02769; D06299; HMDB00045; CHEBI:12056; CHEBI:13234; CHEBI:13235; CHEBI:13736; CHEBI:13740; CHEBI:16027; CHEBI:22242; CHEBI:22245; CHEBI:2356; CHEBI:40510; CHEBI:40721; CHEBI:40726; CHEBI:40786; CHEBI:40826; CHEBI:456215; CHEBI:47222; UPC00020; META:AMP; META:AMP-GROUP; META:CPD0-1139; MNXR4420 |
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Species | fba__atp_c fba__M_atp_c
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ATPC10H12N5O13P3 |
fba__c | F | F | 0.0 | mmol | BQB_IS atp; 312944912; cpd00002; MNXM3; C00002; D08646; HMDB00538; CHEBI:10789; CHEBI:10841; CHEBI:13236; CHEBI:15422; CHEBI:22249; CHEBI:2359; CHEBI:30616; CHEBI:40938; CHEBI:57299; UPC00002; META:ATP; MNXR5128 |
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Species | fba__cit_c fba__M_cit_c
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CitrateC6H5O7 |
fba__c | F | F | 0.0 | mmol | BQB_IS cit; 312944957; cpd00137; MNXM131; C00158; D00037; HMDB00094; CHEBI:13999; CHEBI:16947; CHEBI:23321; CHEBI:23322; CHEBI:30769; CHEBI:35802; CHEBI:35806; CHEBI:35809; CHEBI:35810; CHEBI:3727; CHEBI:41523; CHEBI:42563; CHEBI:50744; CHEBI:76049; UPC00158; META:CIT; META:RXN-14091; MNXR34; 3.1.4.16; R03538; 27878; 27879; 27880; 27881 |
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Species | fba__co2_c fba__M_co2_c
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CO2CO2 |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__co2_e fba__M_co2_e
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CO2CO2 |
fba__e | F | F | 0.0 | mmol | ||||
Species | fba__coa_c fba__M_coa_c
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Coenzyme AC21H32N7O16P3S |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__dhap_c fba__M_dhap_c
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Dihydroxyacetone phosphateC3H5O6P |
fba__c | F | F | 0.0 | mmol | BQB_IS dhap; 312945019; cpd00095; MNXM77; C00111; HMDB01473; HMDB11735; CHEBI:14341; CHEBI:14342; CHEBI:16108; CHEBI:24355; CHEBI:39571; CHEBI:5454; CHEBI:57642; UPC00111; META:DIHYDROXY-ACETONE-PHOSPHATE; META:RXN-10040; MNXR156; 1.14.13.127; R06787; 25050; 25051; 25052; 25053; 27846; 27847; 27848; 27849 |
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Species | fba__e4p_c fba__M_e4p_c
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D-Erythrose 4-phosphateC4H7O7P |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__etoh_c fba__M_etoh_c
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EthanolC2H6O |
fba__c | F | F | 0.0 | mmol | BQB_IS etoh; 312945070; cpd00363; MNXM303; C00469; D00068; D02798; D04855; D06542; HMDB00108; CHEBI:14222; CHEBI:16236; CHEBI:23978; CHEBI:30878; CHEBI:30880; CHEBI:42377; CHEBI:44594; CHEBI:4879; CHEBI:52092; UPC00469; META:ETOH; c0038; MNXR68229; 6.2.1.20 |
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Species | fba__etoh_e fba__M_etoh_e
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EthanolC2H6O |
fba__e | F | F | 0.0 | mmol | BQB_IS etoh; 312945070; cpd00363; MNXM303; C00469; D00068; D02798; D04855; D06542; HMDB00108; CHEBI:14222; CHEBI:16236; CHEBI:23978; CHEBI:30878; CHEBI:30880; CHEBI:42377; CHEBI:44594; CHEBI:4879; CHEBI:52092; UPC00469; META:ETOH; c0038; MNXR68229; 6.2.1.20 |
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Species | fba__f6p_c fba__M_f6p_c
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D-Fructose 6-phosphateC6H11O9P |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__fdp_c fba__M_fdp_c
|
D-Fructose 1,6-bisphosphateC6H10O12P2 |
fba__c | F | F | 0.0 | mmol | BQB_IS fdp; 312945078; cpd00290; MNXM417; C00354; CHEBI:37736; CHEBI:49299; UPC00354; MNXR81447; 1.4.3.6 |
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Species | fba__for_c fba__M_for_c
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FormateCH1O2 |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__for_e fba__M_for_e
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FormateCH1O2 |
fba__e | F | F | 0.0 | mmol | ||||
Species | fba__fru_e fba__M_fru_e
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D-FructoseC6H12O6 |
fba__e | F | F | 0.0 | mmol | ||||
Species | fba__fum_c fba__M_fum_c
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FumarateC4H2O4 |
fba__c | F | F | 0.0 | mmol | BQB_IS fum; 312945105; cpd00106; MNXM93; C00122; D02308; HMDB00134; CHEBI:14284; CHEBI:18012; CHEBI:24122; CHEBI:24124; CHEBI:29806; CHEBI:42511; CHEBI:42743; CHEBI:5190; UPC00122; META:FUM; c0111; MNXR365; 3.1.3.10 |
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Species | fba__fum_e fba__M_fum_e
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FumarateC4H2O4 |
fba__e | F | F | 0.0 | mmol | BQB_IS fum; 312945105; cpd00106; MNXM93; C00122; D02308; HMDB00134; CHEBI:14284; CHEBI:18012; CHEBI:24122; CHEBI:24124; CHEBI:29806; CHEBI:42511; CHEBI:42743; CHEBI:5190; UPC00122; META:FUM; c0111; MNXR365; 3.1.3.10 |
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Species | fba__g3p_c fba__M_g3p_c
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Glyceraldehyde 3-phosphateC3H5O6P |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__g6p_c fba__M_g6p_c
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D-Glucose 6-phosphateC6H11O9P |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__glc__D_e fba__M_glc__D_e
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D-GlucoseC6H12O6 |
fba__e | F | F | 0.0 | mmol | BQB_IS glc__D; 312945142; MNXM41; C00031; D00009; HMDB00122; HMDB06564; CHEBI:12965; CHEBI:17634; CHEBI:20999; CHEBI:4167; UPC00031; META:Glucopyranose; c1564; MNXR30609; 4.2.1.3; R01900; 22144; 22145; 22146; 22147; UCR01900 |
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Species | fba__gln__L_c fba__M_gln__L_c
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L-GlutamineC5H10N2O3 |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__gln__L_e fba__M_gln__L_e
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L-GlutamineC5H10N2O3 |
fba__e | F | F | 0.0 | mmol | ||||
Species | fba__glu__L_c fba__M_glu__L_c
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L-GlutamateC5H8NO4 |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__glu__L_e fba__M_glu__L_e
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L-GlutamateC5H8NO4 |
fba__e | F | F | 0.0 | mmol | ||||
Species | fba__glx_c fba__M_glx_c
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GlyoxylateC2H1O3 |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__h2o_c fba__M_h2o_c
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H2OH2O |
fba__c | F | F | 0.0 | mmol | BQB_IS h2o; 312945185; cpd00001; cpd15275; MNXM2; C00001; C01328; D00001; D03703; D06322; HMDB01039; HMDB02111; CHEBI:10743; CHEBI:13352; CHEBI:13365; CHEBI:13419; CHEBI:15377; CHEBI:16234; CHEBI:27313; CHEBI:29356; CHEBI:29375; CHEBI:29412; CHEBI:30490; CHEBI:33813; CHEBI:42043; CHEBI:42857; CHEBI:43228; CHEBI:44292; CHEBI:44641; CHEBI:44701; CHEBI:44819; CHEBI:5585; CHEBI:5594; UPC00001; UPC01328; META:CPD-15815; META:HYDROXYL-GROUP; META:OH; META:OXONIUM; META:WATER; MNXR68303 |
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Species | fba__h2o_e fba__M_h2o_e
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H2OH2O |
fba__e | F | F | 0.0 | mmol | BQB_IS h2o; 312945185; cpd00001; cpd15275; MNXM2; C00001; C01328; D00001; D03703; D06322; HMDB01039; HMDB02111; CHEBI:10743; CHEBI:13352; CHEBI:13365; CHEBI:13419; CHEBI:15377; CHEBI:16234; CHEBI:27313; CHEBI:29356; CHEBI:29375; CHEBI:29412; CHEBI:30490; CHEBI:33813; CHEBI:42043; CHEBI:42857; CHEBI:43228; CHEBI:44292; CHEBI:44641; CHEBI:44701; CHEBI:44819; CHEBI:5585; CHEBI:5594; UPC00001; UPC01328; META:CPD-15815; META:HYDROXYL-GROUP; META:OH; META:OXONIUM; META:WATER; MNXR68303 |
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Species | fba__h_c fba__M_h_c
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H+H |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__h_e fba__M_h_e
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H+H |
fba__e | F | F | 0.0 | mmol | ||||
Species | fba__icit_c fba__M_icit_c
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IsocitrateC6H5O7 |
fba__c | F | F | 0.0 | mmol | BQB_IS icit; 312945222; cpd00260; MNXM89661; C00311; HMDB00193; CHEBI:14465; CHEBI:16087; CHEBI:24884; CHEBI:24886; CHEBI:30887; CHEBI:36453; CHEBI:36454; CHEBI:5998; UPC00311; META:ALANINE-AMINOTRANSFERASE-RXN; META:RXN-13698; MNXR32635; 2.6.1.2; R00258; 19453; 19454; 19455; 19456; UCR00258; UER00586 |
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Species | fba__lac__D_c fba__M_lac__D_c
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D-LactateC3H5O3 |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__lac__D_e fba__M_lac__D_e
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D-LactateC3H5O3 |
fba__e | F | F | 0.0 | mmol | ||||
Species | fba__mal__L_c fba__M_mal__L_c
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L-MalateC4H4O5 |
fba__c | F | F | 0.0 | mmol | BQB_IS mal__L; 312945270; cpd00130; MNXM98; C00149; HMDB00156; CHEBI:11066; CHEBI:13140; CHEBI:15589; CHEBI:18784; CHEBI:18785; CHEBI:30797; CHEBI:423; UPC00149; META:MAL; META:THREOSPON-RXN; MNXR68366; 1.1.1.381; R03758; 25653; 25654; 25655; 25656 |
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Species | fba__mal__L_e fba__M_mal__L_e
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L-MalateC4H4O5 |
fba__e | F | F | 0.0 | mmol | BQB_IS mal__L; 312945270; cpd00130; MNXM98; C00149; HMDB00156; CHEBI:11066; CHEBI:13140; CHEBI:15589; CHEBI:18784; CHEBI:18785; CHEBI:30797; CHEBI:423; UPC00149; META:MAL; META:THREOSPON-RXN; MNXR68366; 1.1.1.381; R03758; 25653; 25654; 25655; 25656 |
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Species | fba__nad_c fba__M_nad_c
|
Nicotinamide adenine dinucleotideC21H26N7O14P2 |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__nadh_c fba__M_nadh_c
|
Nicotinamide adenine dinucleotide - reducedC21H27N7O14P2 |
fba__c | F | F | 0.0 | mmol | BQB_IS nadh; 312945326; cpd00004; MNXM10; C00004; HMDB01487; CHEBI:13395; CHEBI:13396; CHEBI:16908; CHEBI:21902; CHEBI:44216; CHEBI:57945; CHEBI:7423; UPC00004; META:NADH; MNXR848 |
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Species | fba__nadp_c fba__M_nadp_c
|
Nicotinamide adenine dinucleotide phosphateC21H25N7O17P3 |
fba__c | F | F | 0.0 | mmol | BQB_IS nadp; 312945327; cpd00006; MNXM5; C00006; HMDB00217; CHEBI:13390; CHEBI:13397; CHEBI:13398; CHEBI:18009; CHEBI:21903; CHEBI:25523; CHEBI:25524; CHEBI:29868; CHEBI:44405; CHEBI:44409; CHEBI:58349; CHEBI:7424; CHEBI:77018; CHEBI:77174; UPC00006; META:CPD-16007; META:NAD-P-OR-NOP; META:NADP; META:TRANS-RXN-262; MNXR849 |
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Species | fba__nadph_c fba__M_nadph_c
|
Nicotinamide adenine dinucleotide phosphate - reducedC21H26N7O17P3 |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__nh4_c fba__M_nh4_c
|
AmmoniumH4N |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__nh4_e fba__M_nh4_e
|
AmmoniumH4N |
fba__e | F | F | 0.0 | mmol | ||||
Species | fba__o2_c fba__M_o2_c
|
O2O2 |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__o2_e fba__M_o2_e
|
O2O2 |
fba__e | F | F | 0.0 | mmol | ||||
Species | fba__oaa_c fba__M_oaa_c
|
OxaloacetateC4H2O5 |
fba__c | F | F | 0.0 | mmol | BQB_IS oaa; 312945340; cpd00032; cpd02469; MNXM46; C00036; C03981; HMDB00223; LMFA01170061; LMFA01170120; CHEBI:10547; CHEBI:1158; CHEBI:12810; CHEBI:12820; CHEBI:14703; CHEBI:16452; CHEBI:17479; CHEBI:19638; CHEBI:23910; CHEBI:23911; CHEBI:24958; CHEBI:24959; CHEBI:25731; CHEBI:25734; CHEBI:28394; CHEBI:29049; CHEBI:30744; CHEBI:30798; CHEBI:7812; UPC00036; META:ASPARTATE--TRNA-LIGASE-RXN; META:ENOL-OXALOACETATE; META:OXALACETIC_ACID; c1475; MNXR81772; 6.1.1.23; R05577 |
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Species | fba__pep_c fba__M_pep_c
|
PhosphoenolpyruvateC3H2O6P |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__pi_c fba__M_pi_c
|
PhosphateHO4P |
fba__c | F | F | 0.0 | mmol | BQB_IS pi; 312945413; cpd00009; MNXM9; C00009; D05467; HMDB00973; HMDB01429; HMDB02105; HMDB02142; HMDB05947; CHEBI:14791; CHEBI:18367; CHEBI:26020; CHEBI:26078; CHEBI:29137; CHEBI:29139; CHEBI:32958; CHEBI:39739; CHEBI:39745; CHEBI:43470; CHEBI:43474; CHEBI:45024; CHEBI:68546; CHEBI:68835; CHEBI:74873; CHEBI:7793; UPC00009; META:CHORISMATEMUT-RXN; META:CPD-16459; META:PHOSPHATE-GROUP; META:Pi; c0693; MNXR1159; 5.4.99.5; R01715; 13897; 13898; 13899; 13900; UCR01715; UER00203 |
|||
Species | fba__pi_e fba__M_pi_e
|
PhosphateHO4P |
fba__e | F | F | 0.0 | mmol | BQB_IS pi; 312945413; cpd00009; MNXM9; C00009; D05467; HMDB00973; HMDB01429; HMDB02105; HMDB02142; HMDB05947; CHEBI:14791; CHEBI:18367; CHEBI:26020; CHEBI:26078; CHEBI:29137; CHEBI:29139; CHEBI:32958; CHEBI:39739; CHEBI:39745; CHEBI:43470; CHEBI:43474; CHEBI:45024; CHEBI:68546; CHEBI:68835; CHEBI:74873; CHEBI:7793; UPC00009; META:CHORISMATEMUT-RXN; META:CPD-16459; META:PHOSPHATE-GROUP; META:Pi; c0693; MNXR1159; 5.4.99.5; R01715; 13897; 13898; 13899; 13900; UCR01715; UER00203 |
|||
Species | fba__pyr_c fba__M_pyr_c
|
PyruvateC3H3O3 |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__pyr_e fba__M_pyr_e
|
PyruvateC3H3O3 |
fba__e | F | F | 0.0 | mmol | ||||
Species | fba__q8_c fba__M_q8_c
|
Ubiquinone-8C49H74O4 |
fba__c | F | F | 0.0 | mmol | BQB_IS q8; 312945459; cpd15560; MNXM232; C17569; LMPR02010005; CHEBI:61683; META:UBIQUINONE-8; MNXR68578 |
|||
Species | fba__q8h2_c fba__M_q8h2_c
|
Ubiquinol-8C49H76O4 |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__r5p_c fba__M_r5p_c
|
Alpha-D-Ribose 5-phosphateC5H9O8P |
fba__c | F | F | 0.0 | mmol | BQB_IS r5p; 312945465; cpd00101; MNXM15900; C03736; CHEBI:10270; CHEBI:12331; CHEBI:18189; CHEBI:22413; META:CPD-15318; META:HEMN-RXN; MNXR1273; 1.3.99.22; R06895; 15425; 15426; 15427; 15428; UCR06895; UER00323 |
|||
Species | fba__ru5p__D_c fba__M_ru5p__D_c
|
D-Ribulose 5-phosphateC5H9O8P |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__s7p_c fba__M_s7p_c
|
Sedoheptulose 7-phosphateC7H13O10P |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__succ_c fba__M_succ_c
|
SuccinateC4H4O4 |
fba__c | F | F | 0.0 | mmol | BQB_IS succ; 312945508; cpd00036; MNXM25; C00042; HMDB00254; LMFA01170043; CHEBI:15125; CHEBI:15741; CHEBI:22941; CHEBI:22943; CHEBI:26803; CHEBI:26807; CHEBI:30031; CHEBI:30779; CHEBI:45639; CHEBI:9304; UPC00042; META:ACSERLY-RXN; META:SUC; c0312; MNXR30965; 2.5.1.65; R00897; 14829; 14830; 14831; 14832; UCR00897; UER00200 |
|||
Species | fba__succ_e fba__M_succ_e
|
SuccinateC4H4O4 |
fba__e | F | F | 0.0 | mmol | BQB_IS succ; 312945508; cpd00036; MNXM25; C00042; HMDB00254; LMFA01170043; CHEBI:15125; CHEBI:15741; CHEBI:22941; CHEBI:22943; CHEBI:26803; CHEBI:26807; CHEBI:30031; CHEBI:30779; CHEBI:45639; CHEBI:9304; UPC00042; META:ACSERLY-RXN; META:SUC; c0312; MNXR30965; 2.5.1.65; R00897; 14829; 14830; 14831; 14832; UCR00897; UER00200 |
|||
Species | fba__succoa_c fba__M_succoa_c
|
Succinyl-CoAC25H35N7O19P3S |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__xu5p__D_c fba__M_xu5p__D_c
|
D-Xylulose 5-phosphateC5H9O8P |
fba__c | F | F | 0.0 | mmol | ||||
Species | fba__X
|
biomass | fba__c | F | F | 0.001 | mmol |
type | GeneProducts [137] | name | label | associated species | sbo | cvterm |
---|---|---|---|---|---|---|
GeneProduct | fba__b0351 fba__G_b0351
|
mhpF | b0351 | |||
GeneProduct | fba__b1241 fba__G_b1241
|
adhE | b1241 | |||
GeneProduct | fba__s0001
|
s0001 | ||||
GeneProduct | fba__b3115 fba__G_b3115
|
tdcD | b3115 | |||
GeneProduct | fba__b1849 fba__G_b1849
|
purT | b1849 | |||
GeneProduct | fba__b2296 fba__G_b2296
|
ackA | b2296 | |||
GeneProduct | fba__b0118 fba__G_b0118
|
acnB | b0118 | |||
GeneProduct | fba__b1276 fba__G_b1276
|
acnA | b1276 | |||
GeneProduct | fba__b0474 fba__G_b0474
|
adk | b0474 | |||
GeneProduct | fba__b0116 fba__G_b0116
|
lpd | b0116 | |||
GeneProduct | fba__b0727 fba__G_b0727
|
sucB | b0727 | |||
GeneProduct | fba__b0726 fba__G_b0726
|
sucA | b0726 | |||
GeneProduct | fba__b2587 fba__G_b2587
|
kgtP | b2587 | |||
GeneProduct | fba__b0356 fba__G_b0356
|
frmA | b0356 | |||
GeneProduct | fba__b1478 fba__G_b1478
|
adhP | b1478 | |||
GeneProduct | fba__b3733 fba__G_b3733
|
atpG | b3733 | |||
GeneProduct | fba__b3739 fba__G_b3739
|
atpI | b3739 | |||
GeneProduct | fba__b3735 fba__G_b3735
|
atpH | b3735 | |||
GeneProduct | fba__b3734 fba__G_b3734
|
atpA | b3734 | |||
GeneProduct | fba__b3738 fba__G_b3738
|
atpB | b3738 | |||
GeneProduct | fba__b3736 fba__G_b3736
|
atpF | b3736 | |||
GeneProduct | fba__b3732 fba__G_b3732
|
atpD | b3732 | |||
GeneProduct | fba__b3737 fba__G_b3737
|
atpE | b3737 | |||
GeneProduct | fba__b3731 fba__G_b3731
|
atpC | b3731 | |||
GeneProduct | fba__b0720 fba__G_b0720
|
gltA | b0720 | |||
GeneProduct | fba__b0734 fba__G_b0734
|
cydB | b0734 | |||
GeneProduct | fba__b0978 fba__G_b0978
|
cbdA | b0978 | |||
GeneProduct | fba__b0733 fba__G_b0733
|
cydA | b0733 | |||
GeneProduct | fba__b0979 fba__G_b0979
|
cbdB | b0979 | |||
GeneProduct | fba__b2975 fba__G_b2975
|
glcA | b2975 | |||
GeneProduct | fba__b3603 fba__G_b3603
|
lldP | b3603 | |||
GeneProduct | fba__b2779 fba__G_b2779
|
eno | b2779 | |||
GeneProduct | fba__b2097 fba__G_b2097
|
fbaB | b2097 | |||
GeneProduct | fba__b2925 fba__G_b2925
|
fbaA | b2925 | |||
GeneProduct | fba__b1773 fba__G_b1773
|
ydjI | b1773 | |||
GeneProduct | fba__b3925 fba__G_b3925
|
glpX | b3925 | |||
GeneProduct | fba__b4232 fba__G_b4232
|
fbp | b4232 | |||
GeneProduct | fba__b2492 fba__G_b2492
|
focB | b2492 | |||
GeneProduct | fba__b0904 fba__G_b0904
|
focA | b0904 | |||
GeneProduct | fba__b4151 fba__G_b4151
|
frdD | b4151 | |||
GeneProduct | fba__b4152 fba__G_b4152
|
frdC | b4152 | |||
GeneProduct | fba__b4154 fba__G_b4154
|
frdA | b4154 | |||
GeneProduct | fba__b4153 fba__G_b4153
|
frdB | b4153 | |||
GeneProduct | fba__b2416 fba__G_b2416
|
ptsI | b2416 | |||
GeneProduct | fba__b1818 fba__G_b1818
|
manY | b1818 | |||
GeneProduct | fba__b1817 fba__G_b1817
|
manX | b1817 | |||
GeneProduct | fba__b1819 fba__G_b1819
|
manZ | b1819 | |||
GeneProduct | fba__b2415 fba__G_b2415
|
ptsH | b2415 | |||
GeneProduct | fba__b1611 fba__G_b1611
|
fumC | b1611 | |||
GeneProduct | fba__b4122 fba__G_b4122
|
fumB | b4122 | |||
GeneProduct | fba__b1612 fba__G_b1612
|
fumA | b1612 | |||
GeneProduct | fba__b3528 fba__G_b3528
|
dctA | b3528 | |||
GeneProduct | fba__b1852 fba__G_b1852
|
zwf | b1852 | |||
GeneProduct | fba__b1779 fba__G_b1779
|
gapA | b1779 | |||
GeneProduct | fba__b1621 fba__G_b1621
|
malX | b1621 | |||
GeneProduct | fba__b2417 fba__G_b2417
|
crr | b2417 | |||
GeneProduct | fba__b1101 fba__G_b1101
|
ptsG | b1101 | |||
GeneProduct | fba__b1297 fba__G_b1297
|
puuA | b1297 | |||
GeneProduct | fba__b3870 fba__G_b3870
|
glnA | b3870 | |||
GeneProduct | fba__b0810 fba__G_b0810
|
glnP | b0810 | |||
GeneProduct | fba__b0811 fba__G_b0811
|
glnH | b0811 | |||
GeneProduct | fba__b0809 fba__G_b0809
|
glnQ | b0809 | |||
GeneProduct | fba__b1761 fba__G_b1761
|
gdhA | b1761 | |||
GeneProduct | fba__b0485 fba__G_b0485
|
glsA | b0485 | |||
GeneProduct | fba__b1812 fba__G_b1812
|
pabB | b1812 | |||
GeneProduct | fba__b1524 fba__G_b1524
|
glsB | b1524 | |||
GeneProduct | fba__b3213 fba__G_b3213
|
gltD | b3213 | |||
GeneProduct | fba__b3212 fba__G_b3212
|
gltB | b3212 | |||
GeneProduct | fba__b4077 fba__G_b4077
|
gltP | b4077 | |||
GeneProduct | fba__b2029 fba__G_b2029
|
gnd | b2029 | |||
GeneProduct | fba__b0875 fba__G_b0875
|
aqpZ | b0875 | |||
GeneProduct | fba__b1136 fba__G_b1136
|
icd | b1136 | |||
GeneProduct | fba__b4015 fba__G_b4015
|
aceA | b4015 | |||
GeneProduct | fba__b2133 fba__G_b2133
|
dld | b2133 | |||
GeneProduct | fba__b1380 fba__G_b1380
|
ldhA | b1380 | |||
GeneProduct | fba__b4014 fba__G_b4014
|
aceB | b4014 | |||
GeneProduct | fba__b2976 fba__G_b2976
|
glcB | b2976 | |||
GeneProduct | fba__b3236 fba__G_b3236
|
mdh | b3236 | |||
GeneProduct | fba__b1479 fba__G_b1479
|
maeA | b1479 | |||
GeneProduct | fba__b2463 fba__G_b2463
|
maeB | b2463 | |||
GeneProduct | fba__b2280 fba__G_b2280
|
nuoJ | b2280 | |||
GeneProduct | fba__b2278 fba__G_b2278
|
nuoL | b2278 | |||
GeneProduct | fba__b2281 fba__G_b2281
|
nuoI | b2281 | |||
GeneProduct | fba__b2288 fba__G_b2288
|
nuoA | b2288 | |||
GeneProduct | fba__b2282 fba__G_b2282
|
nuoH | b2282 | |||
GeneProduct | fba__b2286 fba__G_b2286
|
nuoC | b2286 | |||
GeneProduct | fba__b2283 fba__G_b2283
|
nuoG | b2283 | |||
GeneProduct | fba__b2277 fba__G_b2277
|
nuoM | b2277 | |||
GeneProduct | fba__b2287 fba__G_b2287
|
nuoB | b2287 | |||
GeneProduct | fba__b2284 fba__G_b2284
|
nuoF | b2284 | |||
GeneProduct | fba__b2279 fba__G_b2279
|
nuoK | b2279 | |||
GeneProduct | fba__b2276 fba__G_b2276
|
nuoN | b2276 | |||
GeneProduct | fba__b2285 fba__G_b2285
|
nuoE | b2285 | |||
GeneProduct | fba__b3962 fba__G_b3962
|
sthA | b3962 | |||
GeneProduct | fba__b1602 fba__G_b1602
|
pntB | b1602 | |||
GeneProduct | fba__b1603 fba__G_b1603
|
pntA | b1603 | |||
GeneProduct | fba__b0451 fba__G_b0451
|
amtB | b0451 | |||
GeneProduct | fba__b0115 fba__G_b0115
|
aceF | b0115 | |||
GeneProduct | fba__b0114 fba__G_b0114
|
aceE | b0114 | |||
GeneProduct | fba__b3916 fba__G_b3916
|
pfkA | b3916 | |||
GeneProduct | fba__b1723 fba__G_b1723
|
pfkB | b1723 | |||
GeneProduct | fba__b0903 fba__G_b0903
|
pflB | b0903 | |||
GeneProduct | fba__b3952 fba__G_b3952
|
pflC | b3952 | |||
GeneProduct | fba__b3114 fba__G_b3114
|
tdcE | b3114 | |||
GeneProduct | fba__b0902 fba__G_b0902
|
pflA | b0902 | |||
GeneProduct | fba__b2579 fba__G_b2579
|
grcA | b2579 | |||
GeneProduct | fba__b3951 fba__G_b3951
|
pflD | b3951 | |||
GeneProduct | fba__b4025 fba__G_b4025
|
pgi | b4025 | |||
GeneProduct | fba__b2926 fba__G_b2926
|
pgk | b2926 | |||
GeneProduct | fba__b0767 fba__G_b0767
|
pgl | b0767 | |||
GeneProduct | fba__b0755 fba__G_b0755
|
gpmA | b0755 | |||
GeneProduct | fba__b3612 fba__G_b3612
|
gpmM | b3612 | |||
GeneProduct | fba__b4395 fba__G_b4395
|
ytjC | b4395 | |||
GeneProduct | fba__b2987 fba__G_b2987
|
pitB | b2987 | |||
GeneProduct | fba__b3493 fba__G_b3493
|
pitA | b3493 | |||
GeneProduct | fba__b3956 fba__G_b3956
|
ppc | b3956 | |||
GeneProduct | fba__b3403 fba__G_b3403
|
pck | b3403 | |||
GeneProduct | fba__b1702 fba__G_b1702
|
ppsA | b1702 | |||
GeneProduct | fba__b2297 fba__G_b2297
|
pta | b2297 | |||
GeneProduct | fba__b2458 fba__G_b2458
|
eutD | b2458 | |||
GeneProduct | fba__b1676 fba__G_b1676
|
pykF | b1676 | |||
GeneProduct | fba__b1854 fba__G_b1854
|
pykA | b1854 | |||
GeneProduct | fba__b4301 fba__G_b4301
|
sgcE | b4301 | |||
GeneProduct | fba__b3386 fba__G_b3386
|
rpe | b3386 | |||
GeneProduct | fba__b2914 fba__G_b2914
|
rpiA | b2914 | |||
GeneProduct | fba__b4090 fba__G_b4090
|
rpiB | b4090 | |||
GeneProduct | fba__b0723 fba__G_b0723
|
sdhA | b0723 | |||
GeneProduct | fba__b0724 fba__G_b0724
|
sdhB | b0724 | |||
GeneProduct | fba__b0722 fba__G_b0722
|
sdhD | b0722 | |||
GeneProduct | fba__b0721 fba__G_b0721
|
sdhC | b0721 | |||
GeneProduct | fba__b0728 fba__G_b0728
|
sucC | b0728 | |||
GeneProduct | fba__b0729 fba__G_b0729
|
sucD | b0729 | |||
GeneProduct | fba__b2464 fba__G_b2464
|
talA | b2464 | |||
GeneProduct | fba__b0008 fba__G_b0008
|
talB | b0008 | |||
GeneProduct | fba__b2465 fba__G_b2465
|
tktB | b2465 | |||
GeneProduct | fba__b2935 fba__G_b2935
|
tktA | b2935 | |||
GeneProduct | fba__b3919 fba__G_b3919
|
tpiA | b3919 |
type | Parameters [90] | name | constant | value | unit | derived unit | sbo | cvterm |
---|---|---|---|---|---|---|---|---|
Parameter | dt
|
T | 0.1 | h | ||||
Parameter | lb_EX_mal__L_e
|
F | 0.0 | mmol_per_h | ||||
Parameter | ub_EX_mal__L_e
|
F | 1000.0 | mmol_per_h | ||||
Parameter | lb_EX_acald_e
|
F | 0.0 | mmol_per_h | ||||
Parameter | ub_EX_acald_e
|
F | 1000.0 | mmol_per_h | ||||
Parameter | lb_EX_pyr_e
|
F | 0.0 | mmol_per_h | ||||
Parameter | ub_EX_pyr_e
|
F | 1000.0 | mmol_per_h | ||||
Parameter | lb_EX_glc__D_e
|
F | -10.0 | mmol_per_h | ||||
Parameter | ub_EX_glc__D_e
|
F | 1000.0 | mmol_per_h | ||||
Parameter | lb_EX_etoh_e
|
F | 0.0 | mmol_per_h | ||||
Parameter | ub_EX_etoh_e
|
F | 1000.0 | mmol_per_h | ||||
Parameter | lb_EX_nh4_e
|
F | -1000.0 | mmol_per_h | ||||
Parameter | ub_EX_nh4_e
|
F | 1000.0 | mmol_per_h | ||||
Parameter | lb_EX_h2o_e
|
F | -1000.0 | mmol_per_h | ||||
Parameter | ub_EX_h2o_e
|
F | 1000.0 | mmol_per_h | ||||
Parameter | lb_EX_ac_e
|
F | 0.0 | mmol_per_h | ||||
Parameter | ub_EX_ac_e
|
F | 1000.0 | mmol_per_h | ||||
Parameter | lb_EX_akg_e
|
F | 0.0 | mmol_per_h | ||||
Parameter | ub_EX_akg_e
|
F | 1000.0 | mmol_per_h | ||||
Parameter | lb_EX_co2_e
|
F | -1000.0 | mmol_per_h | ||||
Parameter | ub_EX_co2_e
|
F | 1000.0 | mmol_per_h | ||||
Parameter | lb_EX_lac__D_e
|
F | 0.0 | mmol_per_h | ||||
Parameter | ub_EX_lac__D_e
|
F | 1000.0 | mmol_per_h | ||||
Parameter | lb_EX_fum_e
|
F | 0.0 | mmol_per_h | ||||
Parameter | ub_EX_fum_e
|
F | 1000.0 | mmol_per_h | ||||
Parameter | lb_EX_fru_e
|
F | 0.0 | mmol_per_h | ||||
Parameter | ub_EX_fru_e
|
F | 1000.0 | mmol_per_h | ||||
Parameter | lb_EX_for_e
|
F | 0.0 | mmol_per_h | ||||
Parameter | ub_EX_for_e
|
F | 1000.0 | mmol_per_h | ||||
Parameter | lb_EX_gln__L_e
|
F | 0.0 | mmol_per_h | ||||
Parameter | ub_EX_gln__L_e
|
F | 1000.0 | mmol_per_h | ||||
Parameter | lb_EX_succ_e
|
F | 0.0 | mmol_per_h | ||||
Parameter | ub_EX_succ_e
|
F | 1000.0 | mmol_per_h | ||||
Parameter | lb_EX_h_e
|
F | -1000.0 | mmol_per_h | ||||
Parameter | ub_EX_h_e
|
F | 1000.0 | mmol_per_h | ||||
Parameter | lb_EX_pi_e
|
F | -1000.0 | mmol_per_h | ||||
Parameter | ub_EX_pi_e
|
F | 1000.0 | mmol_per_h | ||||
Parameter | lb_EX_X
|
F | 0.0 | mmol_per_h | ||||
Parameter | ub_EX_X
|
F | 1000.0 | mmol_per_h | ||||
Parameter | lb_EX_glu__L_e
|
F | 0.0 | mmol_per_h | ||||
Parameter | ub_EX_glu__L_e
|
F | 1000.0 | mmol_per_h | ||||
Parameter | lb_EX_o2_e
|
F | -1000.0 | mmol_per_h | ||||
Parameter | ub_EX_o2_e
|
F | 1000.0 | mmol_per_h | ||||
Parameter | pEX_mal__L_e
|
F | 1.0 | mmol_per_h | ||||
Parameter | pEX_acald_e
|
F | 1.0 | mmol_per_h | ||||
Parameter | pEX_pyr_e
|
F | 1.0 | mmol_per_h | ||||
Parameter | pEX_glc__D_e
|
F | 1.0 | mmol_per_h | ||||
Parameter | pEX_etoh_e
|
F | 1.0 | mmol_per_h | ||||
Parameter | pEX_nh4_e
|
F | 1.0 | mmol_per_h | ||||
Parameter | pEX_h2o_e
|
F | 1.0 | mmol_per_h | ||||
Parameter | pEX_ac_e
|
F | 1.0 | mmol_per_h | ||||
Parameter | pEX_akg_e
|
F | 1.0 | mmol_per_h | ||||
Parameter | pEX_co2_e
|
F | 1.0 | mmol_per_h | ||||
Parameter | pEX_lac__D_e
|
F | 1.0 | mmol_per_h | ||||
Parameter | pEX_fum_e
|
F | 1.0 | mmol_per_h | ||||
Parameter | pEX_fru_e
|
F | 1.0 | mmol_per_h | ||||
Parameter | pEX_for_e
|
F | 1.0 | mmol_per_h | ||||
Parameter | pEX_gln__L_e
|
F | 1.0 | mmol_per_h | ||||
Parameter | pEX_succ_e
|
F | 1.0 | mmol_per_h | ||||
Parameter | pEX_h_e
|
F | 1.0 | mmol_per_h | ||||
Parameter | pEX_pi_e
|
F | 1.0 | mmol_per_h | ||||
Parameter | pEX_X
|
F | 1.0 | mmol_per_h | ||||
Parameter | pEX_glu__L_e
|
F | 1.0 | mmol_per_h | ||||
Parameter | pEX_o2_e
|
F | 1.0 | mmol_per_h | ||||
Parameter | fba__cobra_default_lb
|
cobra default - lb | T | -1000.0 | fba__mmol_per_gDW_per_hr | |||
Parameter | fba__cobra_default_ub
|
cobra default - ub | T | 1000.0 | fba__mmol_per_gDW_per_hr | |||
Parameter | fba__cobra_0_bound
|
cobra 0 - bound | T | 0.0 | fba__mmol_per_gDW_per_hr | |||
Parameter | fba__R_ATPM_lower_bound
|
R ATPM lower - bound | T | 0.0 | fba__mmol_per_gDW_per_hr | |||
Parameter | fba__R_EX_glc__D_e_lower_bound
|
R EX glc-D e lower - bound | T | -10.0 | fba__mmol_per_gDW_per_hr | |||
Parameter | bounds__fbalb_EX_mal__L_e
|
F | 0.0 | mmol_per_h | ||||
Parameter | bounds__fbalb_EX_acald_e
|
F | 0.0 | mmol_per_h | ||||
Parameter | bounds__fbalb_EX_pyr_e
|
F | 0.0 | mmol_per_h | ||||
Parameter | bounds__fbalb_EX_glc__D_e
|
F | -10.0 | mmol_per_h | ||||
Parameter | bounds__fbalb_EX_etoh_e
|
F | 0.0 | mmol_per_h | ||||
Parameter | bounds__fbalb_EX_nh4_e
|
F | -1000.0 | mmol_per_h | ||||
Parameter | bounds__fbalb_EX_h2o_e
|
F | -1000.0 | mmol_per_h | ||||
Parameter | bounds__fbalb_EX_ac_e
|
F | 0.0 | mmol_per_h | ||||
Parameter | bounds__fbalb_EX_akg_e
|
F | 0.0 | mmol_per_h | ||||
Parameter | bounds__fbalb_EX_co2_e
|
F | -1000.0 | mmol_per_h | ||||
Parameter | bounds__fbalb_EX_lac__D_e
|
F | 0.0 | mmol_per_h | ||||
Parameter | bounds__fbalb_EX_fum_e
|
F | 0.0 | mmol_per_h | ||||
Parameter | bounds__fbalb_EX_fru_e
|
F | 0.0 | mmol_per_h | ||||
Parameter | bounds__fbalb_EX_for_e
|
F | 0.0 | mmol_per_h | ||||
Parameter | bounds__fbalb_EX_gln__L_e
|
F | 0.0 | mmol_per_h | ||||
Parameter | bounds__fbalb_EX_succ_e
|
F | 0.0 | mmol_per_h | ||||
Parameter | bounds__fbalb_EX_h_e
|
F | -1000.0 | mmol_per_h | ||||
Parameter | bounds__fbalb_EX_pi_e
|
F | -1000.0 | mmol_per_h | ||||
Parameter | bounds__fbalb_EX_X
|
F | 0.0 | mmol_per_h | ||||
Parameter | bounds__fbalb_EX_glu__L_e
|
F | 0.0 | mmol_per_h | ||||
Parameter | bounds__fbalb_EX_o2_e
|
F | -1000.0 | mmol_per_h |
type | Rules [42] | assignment | name | derived units | sbo | cvterm | |
---|---|---|---|---|---|---|---|
Rule | pEX_mal__L_e
|
= | |||||
Rule | pEX_acald_e
|
= | |||||
Rule | pEX_pyr_e
|
= | |||||
Rule | pEX_glc__D_e
|
= | |||||
Rule | pEX_etoh_e
|
= | |||||
Rule | pEX_nh4_e
|
= | |||||
Rule | pEX_h2o_e
|
= | |||||
Rule | pEX_ac_e
|
= | |||||
Rule | pEX_akg_e
|
= | |||||
Rule | pEX_co2_e
|
= | |||||
Rule | pEX_lac__D_e
|
= | |||||
Rule | pEX_fum_e
|
= | |||||
Rule | pEX_fru_e
|
= | |||||
Rule | pEX_for_e
|
= | |||||
Rule | pEX_gln__L_e
|
= | |||||
Rule | pEX_succ_e
|
= | |||||
Rule | pEX_h_e
|
= | |||||
Rule | pEX_pi_e
|
= | |||||
Rule | pEX_X
|
= | |||||
Rule | pEX_glu__L_e
|
= | |||||
Rule | pEX_o2_e
|
= | |||||
Rule | lb_EX_mal__L_e
|
= | |||||
Rule | lb_EX_acald_e
|
= | |||||
Rule | lb_EX_pyr_e
|
= | |||||
Rule | lb_EX_glc__D_e
|
= | |||||
Rule | lb_EX_etoh_e
|
= | |||||
Rule | lb_EX_nh4_e
|
= | |||||
Rule | lb_EX_h2o_e
|
= | |||||
Rule | lb_EX_ac_e
|
= | |||||
Rule | lb_EX_akg_e
|
= | |||||
Rule | lb_EX_co2_e
|
= | |||||
Rule | lb_EX_lac__D_e
|
= | |||||
Rule | lb_EX_fum_e
|
= | |||||
Rule | lb_EX_fru_e
|
= | |||||
Rule | lb_EX_for_e
|
= | |||||
Rule | lb_EX_gln__L_e
|
= | |||||
Rule | lb_EX_succ_e
|
= | |||||
Rule | lb_EX_h_e
|
= | |||||
Rule | lb_EX_pi_e
|
= | |||||
Rule | lb_EX_X
|
= | |||||
Rule | lb_EX_glu__L_e
|
= | |||||
Rule | lb_EX_o2_e
|
= |
type | Reactions [117] | id | name | equation | modifiers | kinetic law | derived units | sbo | cvterm | |
---|---|---|---|---|---|---|---|---|---|---|
Reaction | fba__ACALD fba__R_ACALD
|
Acetaldehyde dehydrogenase (acetylating)[-1000.0 1000.0] (b0351 or b1241) |
⇆ | fba__acald_c + fba__coa_c + fba__nad_c ⇆ fba__accoa_c + fba__h_c + fba__nadh_c | ||||||
Reaction | fba__ACALDt fba__R_ACALDt
|
Acetaldehyde reversible transport[-1000.0 1000.0] s0001 |
⇆ | fba__acald_e ⇆ fba__acald_c | ||||||
Reaction | fba__ACKr fba__R_ACKr
|
Acetate kinase[-1000.0 1000.0] (b2296 or b3115 or b1849) |
⇆ | fba__ac_c + fba__atp_c ⇆ fba__actp_c + fba__adp_c | ||||||
Reaction | fba__ACONTa fba__R_ACONTa
|
Aconitase (half-reaction A, Citrate hydro-lyase)[-1000.0 1000.0] (b0118 or b1276) |
⇆ | fba__cit_c ⇆ fba__acon_C_c + fba__h2o_c | ||||||
Reaction | fba__ACONTb fba__R_ACONTb
|
Aconitase (half-reaction B, Isocitrate hydro-lyase)[-1000.0 1000.0] (b0118 or b1276) |
⇆ | fba__acon_C_c + fba__h2o_c ⇆ fba__icit_c | ||||||
Reaction | fba__ACt2r fba__R_ACt2r
|
Acetate reversible transport via proton symport[-1000.0 1000.0] |
⇆ | fba__ac_e + fba__h_e ⇆ fba__ac_c + fba__h_c | ||||||
Reaction | fba__ADK1 fba__R_ADK1
|
Adenylate kinase[-1000.0 1000.0] b0474 |
⇆ | fba__amp_c + fba__atp_c ⇆ 2.0 fba__adp_c | ||||||
Reaction | fba__AKGDH fba__R_AKGDH
|
2-Oxogluterate dehydrogenase[0.0 1000.0] (b0726 and b0116 and b0727) |
➞ | fba__akg_c + fba__coa_c + fba__nad_c ➞ fba__co2_c + fba__nadh_c + fba__succoa_c | ||||||
Reaction | fba__AKGt2r fba__R_AKGt2r
|
2 oxoglutarate reversible transport via symport[-1000.0 1000.0] b2587 |
⇆ | fba__akg_e + fba__h_e ⇆ fba__akg_c + fba__h_c | ||||||
Reaction | fba__ALCD2x fba__R_ALCD2x
|
Alcohol dehydrogenase (ethanol)[-1000.0 1000.0] (b1478 or b0356 or b1241) |
⇆ | fba__etoh_c + fba__nad_c ⇆ fba__acald_c + fba__h_c + fba__nadh_c | ||||||
Reaction | fba__ATPM fba__R_ATPM
|
ATP maintenance requirement[0.0 1000.0] |
➞ | fba__atp_c + fba__h2o_c ➞ fba__adp_c + fba__h_c + fba__pi_c | ||||||
Reaction | fba__ATPS4r fba__R_ATPS4r
|
ATP synthase (four protons for one ATP)[-1000.0 1000.0] ((b3738 and b3736 and b3737 and b3735 and b3733 and b3731 and b3732 and b3734) or (b3734 and b3732 and b3731 and b3733 and b3735 and b3737 and b3736 and b3738 and b3739)) |
⇆ | fba__adp_c + 4.0 fba__h_e + fba__pi_c ⇆ fba__atp_c + fba__h2o_c + 3.0 fba__h_c | ||||||
Reaction | fba__BIOMASS_Ecoli_core_w_GAM fba__R_BIOMASS_Ecoli_core_w_GAM
|
Biomass Objective Function with GAM[0.0 1000.0] |
➞ | 1.496 fba__M_3pg_c + 3.7478 fba__accoa_c + 59.81 fba__atp_c + 0.361 fba__e4p_c + 0.0709 fba__f6p_c + 0.129 fba__g3p_c + 0.205 fba__g6p_c + 0.2557 fba__gln__L_c + 4.9414 fba__glu__L_c + 59.81 fba__h2o_c + 3.547 fba__nad_c + 13.0279 fba__nadph_c + 1.7867 fba__oaa_c + 0.5191 fba__pep_c + 2.8328 fba__pyr_c + 0.8977 fba__r5p_c ➞ 59.81 fba__adp_c + 4.1182 fba__akg_c + 3.7478 fba__coa_c + 59.81 fba__h_c + 3.547 fba__nadh_c + 13.0279 fba__nadp_c + 59.81 fba__pi_c + fba__X | ||||||
Reaction | fba__CO2t fba__R_CO2t
|
CO2 transporter via diffusion[-1000.0 1000.0] s0001 |
⇆ | fba__co2_e ⇆ fba__co2_c | ||||||
Reaction | fba__CS fba__R_CS
|
Citrate synthase[0.0 1000.0] b0720 |
➞ | fba__accoa_c + fba__h2o_c + fba__oaa_c ➞ fba__cit_c + fba__coa_c + fba__h_c | ||||||
Reaction | fba__CYTBD fba__R_CYTBD
|
Cytochrome oxidase bd (ubiquinol-8: 2 protons)[0.0 1000.0] ((b0978 and b0979) or (b0733 and b0734)) |
➞ | 2.0 fba__h_c + 0.5 fba__o2_c + fba__q8h2_c ➞ fba__h2o_c + 2.0 fba__h_e + fba__q8_c | ||||||
Reaction | fba__D_LACt2 fba__R_D_LACt2
|
D lactate transport via proton symport[-1000.0 1000.0] (b2975 or b3603) |
⇆ | fba__h_e + fba__lac__D_e ⇆ fba__h_c + fba__lac__D_c | ||||||
Reaction | fba__ENO fba__R_ENO
|
Enolase[-1000.0 1000.0] b2779 |
⇆ | fba__M_2pg_c ⇆ fba__h2o_c + fba__pep_c | ||||||
Reaction | fba__ETOHt2r fba__R_ETOHt2r
|
ETOHt2r[-1000.0 1000.0] |
⇆ | fba__etoh_e + fba__h_e ⇆ fba__etoh_c + fba__h_c | ||||||
Reaction | EX_ac_e fba__R_EX_ac_e
|
Acetate exchange[0.0 1000.0] |
⇆ | fba__ac_e ⇆ | ||||||
Reaction | EX_acald_e fba__R_EX_acald_e
|
Acetaldehyde exchange[0.0 1000.0] |
⇆ | fba__acald_e ⇆ | ||||||
Reaction | EX_akg_e fba__R_EX_akg_e
|
2-Oxoglutarate exchange[0.0 1000.0] |
⇆ | fba__akg_e ⇆ | ||||||
Reaction | EX_co2_e fba__R_EX_co2_e
|
CO2 exchange[-1000.0 1000.0] |
⇆ | fba__co2_e ⇆ | ||||||
Reaction | EX_etoh_e fba__R_EX_etoh_e
|
Ethanol exchange[0.0 1000.0] |
⇆ | fba__etoh_e ⇆ | ||||||
Reaction | EX_for_e fba__R_EX_for_e
|
Formate exchange[0.0 1000.0] |
⇆ | fba__for_e ⇆ | ||||||
Reaction | EX_fru_e fba__R_EX_fru_e
|
D-Fructose exchange[0.0 1000.0] |
⇆ | fba__fru_e ⇆ | ||||||
Reaction | EX_fum_e fba__R_EX_fum_e
|
Fumarate exchange[0.0 1000.0] |
⇆ | fba__fum_e ⇆ | ||||||
Reaction | EX_glc__D_e fba__R_EX_glc__D_e
|
D-Glucose exchange[-10.0 1000.0] |
⇆ | fba__glc__D_e ⇆ | ||||||
Reaction | EX_gln__L_e fba__R_EX_gln__L_e
|
L-Glutamine exchange[0.0 1000.0] |
⇆ | fba__gln__L_e ⇆ | ||||||
Reaction | EX_glu__L_e fba__R_EX_glu__L_e
|
L-Glutamate exchange[0.0 1000.0] |
⇆ | fba__glu__L_e ⇆ | ||||||
Reaction | EX_h_e fba__R_EX_h_e
|
H+ exchange[-1000.0 1000.0] |
⇆ | fba__h_e ⇆ | ||||||
Reaction | EX_h2o_e fba__R_EX_h2o_e
|
H2O exchange[-1000.0 1000.0] |
⇆ | fba__h2o_e ⇆ | ||||||
Reaction | EX_lac__D_e fba__R_EX_lac__D_e
|
D-lactate exchange[0.0 1000.0] |
⇆ | fba__lac__D_e ⇆ | ||||||
Reaction | EX_mal__L_e fba__R_EX_mal__L_e
|
L-Malate exchange[0.0 1000.0] |
⇆ | fba__mal__L_e ⇆ | ||||||
Reaction | EX_nh4_e fba__R_EX_nh4_e
|
Ammonia exchange[-1000.0 1000.0] |
⇆ | fba__nh4_e ⇆ | ||||||
Reaction | EX_o2_e fba__R_EX_o2_e
|
O2 exchange[-1000.0 1000.0] |
⇆ | fba__o2_e ⇆ | ||||||
Reaction | EX_pi_e fba__R_EX_pi_e
|
Phosphate exchange[-1000.0 1000.0] |
⇆ | fba__pi_e ⇆ | ||||||
Reaction | EX_pyr_e fba__R_EX_pyr_e
|
Pyruvate exchange[0.0 1000.0] |
⇆ | fba__pyr_e ⇆ | ||||||
Reaction | EX_succ_e fba__R_EX_succ_e
|
Succinate exchange[0.0 1000.0] |
⇆ | fba__succ_e ⇆ | ||||||
Reaction | fba__FBA fba__R_FBA
|
Fructose-bisphosphate aldolase[-1000.0 1000.0] (b1773 or b2097 or b2925) |
⇆ | fba__fdp_c ⇆ fba__dhap_c + fba__g3p_c | ||||||
Reaction | fba__FBP fba__R_FBP
|
Fructose-bisphosphatase[0.0 1000.0] (b3925 or b4232) |
➞ | fba__fdp_c + fba__h2o_c ➞ fba__f6p_c + fba__pi_c | ||||||
Reaction | fba__FORt2 fba__R_FORt2
|
Formate transport in via proton symport[0.0 1000.0] (b0904 or b2492) |
➞ | fba__for_e + fba__h_e ➞ fba__for_c + fba__h_c | ||||||
Reaction | fba__FORti fba__R_FORti
|
Formate transport via diffusion[0.0 1000.0] (b0904 or b2492) |
➞ | fba__for_c ➞ fba__for_e | ||||||
Reaction | fba__FRD7 fba__R_FRD7
|
Fumarate reductase[0.0 1000.0] (b4153 and b4151 and b4152 and b4154) |
➞ | fba__fum_c + fba__q8h2_c ➞ fba__q8_c + fba__succ_c | ||||||
Reaction | fba__FRUpts2 fba__R_FRUpts2
|
Fructose transport via PEP:Pyr PTS (f6p generating)[0.0 1000.0] (b2415 and b1818 and b1817 and b1819 and b2416) |
➞ | fba__fru_e + fba__pep_c ➞ fba__f6p_c + fba__pyr_c | ||||||
Reaction | fba__FUM fba__R_FUM
|
Fumarase[-1000.0 1000.0] (b4122 or b1612 or b1611) |
⇆ | fba__fum_c + fba__h2o_c ⇆ fba__mal__L_c | ||||||
Reaction | fba__FUMt2_2 fba__R_FUMt2_2
|
Fumarate transport via proton symport (2 H)[0.0 1000.0] b3528 |
➞ | fba__fum_e + 2.0 fba__h_e ➞ fba__fum_c + 2.0 fba__h_c | ||||||
Reaction | fba__G6PDH2r fba__R_G6PDH2r
|
Glucose 6-phosphate dehydrogenase[-1000.0 1000.0] b1852 |
⇆ | fba__g6p_c + fba__nadp_c ⇆ fba__M_6pgl_c + fba__h_c + fba__nadph_c | ||||||
Reaction | fba__GAPD fba__R_GAPD
|
Glyceraldehyde-3-phosphate dehydrogenase[-1000.0 1000.0] b1779 |
⇆ | fba__g3p_c + fba__nad_c + fba__pi_c ⇆ fba__M_13dpg_c + fba__h_c + fba__nadh_c | ||||||
Reaction | fba__GLCpts fba__R_GLCpts
|
D-glucose transport via PEP:Pyr PTS[0.0 1000.0] ((b2415 and b1818 and b1817 and b1819 and b2416) or (b2415 and b2417 and b1101 and b2416) or (b2415 and b2417 and b1621 and b2416)) |
➞ | fba__glc__D_e + fba__pep_c ➞ fba__g6p_c + fba__pyr_c | ||||||
Reaction | fba__GLNS fba__R_GLNS
|
Glutamine synthetase[0.0 1000.0] (b3870 or b1297) |
➞ | fba__atp_c + fba__glu__L_c + fba__nh4_c ➞ fba__adp_c + fba__gln__L_c + fba__h_c + fba__pi_c | ||||||
Reaction | fba__GLNabc fba__R_GLNabc
|
GLNabc[0.0 1000.0] (b0810 and b0811 and b0809) |
➞ | fba__atp_c + fba__gln__L_e + fba__h2o_c ➞ fba__adp_c + fba__gln__L_c + fba__h_c + fba__pi_c | ||||||
Reaction | fba__GLUDy fba__R_GLUDy
|
Glutamate dehydrogenase (NADP)[-1000.0 1000.0] b1761 |
⇆ | fba__glu__L_c + fba__h2o_c + fba__nadp_c ⇆ fba__akg_c + fba__h_c + fba__nadph_c + fba__nh4_c | ||||||
Reaction | fba__GLUN fba__R_GLUN
|
Glutaminase[0.0 1000.0] (b0485 or b1812 or b1524) |
➞ | fba__gln__L_c + fba__h2o_c ➞ fba__glu__L_c + fba__nh4_c | ||||||
Reaction | fba__GLUSy fba__R_GLUSy
|
Glutamate synthase (NADPH)[0.0 1000.0] (b3212 and b3213) |
➞ | fba__akg_c + fba__gln__L_c + fba__h_c + fba__nadph_c ➞ 2.0 fba__glu__L_c + fba__nadp_c | ||||||
Reaction | fba__GLUt2r fba__R_GLUt2r
|
L glutamate transport via proton symport reversible[-1000.0 1000.0] b4077 |
⇆ | fba__glu__L_e + fba__h_e ⇆ fba__glu__L_c + fba__h_c | ||||||
Reaction | fba__GND fba__R_GND
|
Phosphogluconate dehydrogenase[0.0 1000.0] b2029 |
➞ | fba__M_6pgc_c + fba__nadp_c ➞ fba__co2_c + fba__nadph_c + fba__ru5p__D_c | ||||||
Reaction | fba__H2Ot fba__R_H2Ot
|
H2O transport via diffusion[-1000.0 1000.0] (b0875 or s0001) |
⇆ | fba__h2o_e ⇆ fba__h2o_c | ||||||
Reaction | fba__ICDHyr fba__R_ICDHyr
|
Isocitrate dehydrogenase (NADP)[-1000.0 1000.0] b1136 |
⇆ | fba__icit_c + fba__nadp_c ⇆ fba__akg_c + fba__co2_c + fba__nadph_c | ||||||
Reaction | fba__ICL fba__R_ICL
|
Isocitrate lyase[0.0 1000.0] b4015 |
➞ | fba__icit_c ➞ fba__glx_c + fba__succ_c | ||||||
Reaction | fba__LDH_D fba__R_LDH_D
|
D-lactate dehydrogenase[-1000.0 1000.0] (b2133 or b1380) |
⇆ | fba__lac__D_c + fba__nad_c ⇆ fba__h_c + fba__nadh_c + fba__pyr_c | ||||||
Reaction | fba__MALS fba__R_MALS
|
Malate synthase[0.0 1000.0] (b4014 or b2976) |
➞ | fba__accoa_c + fba__glx_c + fba__h2o_c ➞ fba__coa_c + fba__h_c + fba__mal__L_c | ||||||
Reaction | fba__MALt2_2 fba__R_MALt2_2
|
Malate transport via proton symport (2 H)[0.0 1000.0] b3528 |
➞ | 2.0 fba__h_e + fba__mal__L_e ➞ 2.0 fba__h_c + fba__mal__L_c | ||||||
Reaction | fba__MDH fba__R_MDH
|
Malate dehydrogenase[-1000.0 1000.0] b3236 |
⇆ | fba__mal__L_c + fba__nad_c ⇆ fba__h_c + fba__nadh_c + fba__oaa_c | ||||||
Reaction | fba__ME1 fba__R_ME1
|
Malic enzyme (NAD)[0.0 1000.0] b1479 |
➞ | fba__mal__L_c + fba__nad_c ➞ fba__co2_c + fba__nadh_c + fba__pyr_c | ||||||
Reaction | fba__ME2 fba__R_ME2
|
Malic enzyme (NADP)[0.0 1000.0] b2463 |
➞ | fba__mal__L_c + fba__nadp_c ➞ fba__co2_c + fba__nadph_c + fba__pyr_c | ||||||
Reaction | fba__NADH16 fba__R_NADH16
|
NADH dehydrogenase (ubiquinone-8 & 3 protons)[0.0 1000.0] (b2287 and b2285 and b2283 and b2281 and b2279 and b2277 and b2276 and b2278 and b2280 and b2282 and b2284 and b2286 and b2288) |
➞ | 4.0 fba__h_c + fba__nadh_c + fba__q8_c ➞ 3.0 fba__h_e + fba__nad_c + fba__q8h2_c | ||||||
Reaction | fba__NADTRHD fba__R_NADTRHD
|
NAD transhydrogenase[0.0 1000.0] (b3962 or (b1602 and b1603)) |
➞ | fba__nad_c + fba__nadph_c ➞ fba__nadh_c + fba__nadp_c | ||||||
Reaction | fba__NH4t fba__R_NH4t
|
Ammonia reversible transport[-1000.0 1000.0] (s0001 or b0451) |
⇆ | fba__nh4_e ⇆ fba__nh4_c | ||||||
Reaction | fba__O2t fba__R_O2t
|
O2 transport diffusion [-1000.0 1000.0] s0001 |
⇆ | fba__o2_e ⇆ fba__o2_c | ||||||
Reaction | fba__PDH fba__R_PDH
|
Pyruvate dehydrogenase[0.0 1000.0] (b0115 and b0114 and b0116) |
➞ | fba__coa_c + fba__nad_c + fba__pyr_c ➞ fba__accoa_c + fba__co2_c + fba__nadh_c | ||||||
Reaction | fba__PFK fba__R_PFK
|
Phosphofructokinase[0.0 1000.0] (b3916 or b1723) |
➞ | fba__atp_c + fba__f6p_c ➞ fba__adp_c + fba__fdp_c + fba__h_c | ||||||
Reaction | fba__PFL fba__R_PFL
|
Pyruvate formate lyase[0.0 1000.0] ((b0902 and b3114) or (b0903 and b0902 and b2579) or (b0902 and b0903) or (b3951 and b3952)) |
➞ | fba__coa_c + fba__pyr_c ➞ fba__accoa_c + fba__for_c | ||||||
Reaction | fba__PGI fba__R_PGI
|
Glucose-6-phosphate isomerase[-1000.0 1000.0] b4025 |
⇆ | fba__g6p_c ⇆ fba__f6p_c | ||||||
Reaction | fba__PGK fba__R_PGK
|
Phosphoglycerate kinase[-1000.0 1000.0] b2926 |
⇆ | fba__M_3pg_c + fba__atp_c ⇆ fba__M_13dpg_c + fba__adp_c | ||||||
Reaction | fba__PGL fba__R_PGL
|
6-phosphogluconolactonase[0.0 1000.0] b0767 |
➞ | fba__M_6pgl_c + fba__h2o_c ➞ fba__M_6pgc_c + fba__h_c | ||||||
Reaction | fba__PGM fba__R_PGM
|
Phosphoglycerate mutase[-1000.0 1000.0] (b4395 or b3612 or b0755) |
⇆ | fba__M_2pg_c ⇆ fba__M_3pg_c | ||||||
Reaction | fba__PIt2r fba__R_PIt2r
|
Phosphate reversible transport via symport[-1000.0 1000.0] (b2987 or b3493) |
⇆ | fba__h_e + fba__pi_e ⇆ fba__h_c + fba__pi_c | ||||||
Reaction | fba__PPC fba__R_PPC
|
Phosphoenolpyruvate carboxylase[0.0 1000.0] b3956 |
➞ | fba__co2_c + fba__h2o_c + fba__pep_c ➞ fba__h_c + fba__oaa_c + fba__pi_c | ||||||
Reaction | fba__PPCK fba__R_PPCK
|
Phosphoenolpyruvate carboxykinase[0.0 1000.0] b3403 |
➞ | fba__atp_c + fba__oaa_c ➞ fba__adp_c + fba__co2_c + fba__pep_c | ||||||
Reaction | fba__PPS fba__R_PPS
|
Phosphoenolpyruvate synthase[0.0 1000.0] b1702 |
➞ | fba__atp_c + fba__h2o_c + fba__pyr_c ➞ fba__amp_c + 2.0 fba__h_c + fba__pep_c + fba__pi_c | ||||||
Reaction | fba__PTAr fba__R_PTAr
|
Phosphotransacetylase[-1000.0 1000.0] (b2297 or b2458) |
⇆ | fba__accoa_c + fba__pi_c ⇆ fba__actp_c + fba__coa_c | ||||||
Reaction | fba__PYK fba__R_PYK
|
Pyruvate kinase[0.0 1000.0] (b1854 or b1676) |
➞ | fba__adp_c + fba__h_c + fba__pep_c ➞ fba__atp_c + fba__pyr_c | ||||||
Reaction | fba__PYRt2 fba__R_PYRt2
|
Pyruvate transport in via proton symport[-1000.0 1000.0] |
⇆ | fba__h_e + fba__pyr_e ⇆ fba__h_c + fba__pyr_c | ||||||
Reaction | fba__RPE fba__R_RPE
|
Ribulose 5-phosphate 3-epimerase[-1000.0 1000.0] (b3386 or b4301) |
⇆ | fba__ru5p__D_c ⇆ fba__xu5p__D_c | ||||||
Reaction | fba__RPI fba__R_RPI
|
Ribose-5-phosphate isomerase[-1000.0 1000.0] (b2914 or b4090) |
⇆ | fba__r5p_c ⇆ fba__ru5p__D_c | ||||||
Reaction | fba__SUCCt2_2 fba__R_SUCCt2_2
|
Succinate transport via proton symport (2 H)[0.0 1000.0] b3528 |
➞ | 2.0 fba__h_e + fba__succ_e ➞ 2.0 fba__h_c + fba__succ_c | ||||||
Reaction | fba__SUCCt3 fba__R_SUCCt3
|
Succinate transport out via proton antiport[0.0 1000.0] |
➞ | fba__h_e + fba__succ_c ➞ fba__h_c + fba__succ_e | ||||||
Reaction | fba__SUCDi fba__R_SUCDi
|
Succinate dehydrogenase (irreversible)[0.0 1000.0] (b0723 and b0721 and b0722 and b0724) |
➞ | fba__q8_c + fba__succ_c ➞ fba__fum_c + fba__q8h2_c | ||||||
Reaction | fba__SUCOAS fba__R_SUCOAS
|
Succinyl-CoA synthetase (ADP-forming)[-1000.0 1000.0] (b0728 and b0729) |
⇆ | fba__atp_c + fba__coa_c + fba__succ_c ⇆ fba__adp_c + fba__pi_c + fba__succoa_c | ||||||
Reaction | fba__TALA fba__R_TALA
|
Transaldolase[-1000.0 1000.0] (b2464 or b0008) |
⇆ | fba__g3p_c + fba__s7p_c ⇆ fba__e4p_c + fba__f6p_c | ||||||
Reaction | fba__THD2 fba__R_THD2
|
NAD(P) transhydrogenase[0.0 1000.0] (b1602 and b1603) |
➞ | 2.0 fba__h_e + fba__nadh_c + fba__nadp_c ➞ 2.0 fba__h_c + fba__nad_c + fba__nadph_c | ||||||
Reaction | fba__TKT1 fba__R_TKT1
|
Transketolase[-1000.0 1000.0] (b2935 or b2465) |
⇆ | fba__r5p_c + fba__xu5p__D_c ⇆ fba__g3p_c + fba__s7p_c | ||||||
Reaction | fba__TKT2 fba__R_TKT2
|
Transketolase[-1000.0 1000.0] (b2935 or b2465) |
⇆ | fba__e4p_c + fba__xu5p__D_c ⇆ fba__f6p_c + fba__g3p_c | ||||||
Reaction | fba__TPI fba__R_TPI
|
Triose-phosphate isomerase[-1000.0 1000.0] b3919 |
⇆ | fba__dhap_c ⇆ fba__g3p_c | ||||||
Reaction | EX_X
|
[0.0 1000.0] |
⇆ | fba__X ⇆ | ||||||
Reaction | update__update_mal__L_e
|
⇆ | mal__L_e ⇆ | |||||||
Reaction | update__update_acald_e
|
⇆ | acald_e ⇆ | |||||||
Reaction | update__update_pyr_e
|
⇆ | pyr_e ⇆ | |||||||
Reaction | update__update_glc__D_e
|
⇆ | glc__D_e ⇆ | |||||||
Reaction | update__update_etoh_e
|
⇆ | etoh_e ⇆ | |||||||
Reaction | update__update_nh4_e
|
⇆ | nh4_e ⇆ | |||||||
Reaction | update__update_h2o_e
|
⇆ | h2o_e ⇆ | |||||||
Reaction | update__update_ac_e
|
⇆ | ac_e ⇆ | |||||||
Reaction | update__update_akg_e
|
⇆ | akg_e ⇆ | |||||||
Reaction | update__update_co2_e
|
⇆ | co2_e ⇆ | |||||||
Reaction | update__update_lac__D_e
|
⇆ | lac__D_e ⇆ | |||||||
Reaction | update__update_fum_e
|
⇆ | fum_e ⇆ | |||||||
Reaction | update__update_fru_e
|
⇆ | fru_e ⇆ | |||||||
Reaction | update__update_for_e
|
⇆ | for_e ⇆ | |||||||
Reaction | update__update_gln__L_e
|
⇆ | gln__L_e ⇆ | |||||||
Reaction | update__update_succ_e
|
⇆ | succ_e ⇆ | |||||||
Reaction | update__update_h_e
|
⇆ | h_e ⇆ | |||||||
Reaction | update__update_pi_e
|
⇆ | pi_e ⇆ | |||||||
Reaction | update__update_X
|
⇆ | X ⇆ | |||||||
Reaction | update__update_glu__L_e
|
⇆ | glu__L_e ⇆ | |||||||
Reaction | update__update_o2_e
|
⇆ | o2_e ⇆ |
type | Objectives [1] | name | type | flux objectives | sbo | cvterm |
---|---|---|---|---|---|---|
Reaction | fba__obj
|
maximize | +1.0*fba__BIOMASS_Ecoli_core_w_GAM |