Koenig Human Galactose Metabolism

Description

This is a metabolism model of Human galactose metabolism in SBML format.

The content of this model has been carefully created in a manual research effort.
This file has been produced by Matthias Koenig.

Terms of use

Copyright © 2015 Matthias Koenig.

Redistribution and use of any part of this model, with or without modification, are permitted provided that the following conditions are met:

  1. Redistributions of this SBML file must retain the above copyright notice, this list of conditions and the following disclaimer.
  2. Redistributions in a different form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution.
This model is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.


Model : galactose_30_annotated

Creator
Matthias, Koenig, Charite Berlin, konigmatt@googlemail.com
Created: 2016-02-16 12:28
Modified: 2016-02-16 12:28

SBML model


idgalactose_30_annotated
namegalactose_30
versionL3V1
times
substancemole
extentmole
volumem3
aream2
lengthm
UnitDefinitions [25] name units sbo cvterm
Pa_s_per_m2 pascal s m 2
Pa_s_per_m3 pascal s m 3
Pa_s_per_m4 pascal s m 4
Pa pascal
m_per_s m s
per_m3 1 m 3
per_m2 1 m 2
mole_per_s mole s
m2_per_s m 2 s
mole_per_s_per_mM2 m 6 mole s
m3_per_skg m 3 kg s
m2 m 2
mM_s mole s m 3
per_s 1 s
m3 m 3
mM mole m 3
mole_per_s_per_mM m 3 s
kg_per_m3 kg m 3
per_mM m 3 mole
m6_per_Pa2_s2 m 6 pascal 2 s 2
kg kg
m m
s s
Pa_s pascal s
m3_per_s m 3 s

Compartments [4] name size constant spatial dimensions unit derived unit sbo cvterm
h hepatocyte Vol_h 3 m3 m 3
c cytosol Vol_c 3 m3 m 3
e external Vol_e 3 m3 m 3
m plasma membrane A_m 2 m2 m 2

Species [36] name compartment boundary condition constant initial amount initial concentration substance units derived units sbo cvterm
c__ppi pyrophosphate
HO7P2 (-3)
c 0.008 mole mole m 3
BQB_IS
SBO:0000247
CHEBI:33019
BQB_IS_VERSION_OF
C00013
e__h2oM water M*
H2O
e 0.0 mole mole m 3
c__glc1p D-glucose 1-phophate
C6H11O9P (-2)
c 0.012 mole mole m 3
c__acptgal Acceptor-galactose
C6H1206R
c 0.0 mole mole m 3
c__acpt Acceptor (glc/gal)
H2R
c 0.0 mole mole m 3
c__udpgal UDP-D-galactose
C15H22N2O17P2 (-2)
c 0.11 mole mole m 3
BQB_IS
SBO:0000247
CHEBI:66914
BQB_IS_VERSION_OF
C00052
c__udp UDP
C9H11N2O12P2 (-3)
c 0.09 mole mole m 3
BQB_IS
SBO:0000247
CHEBI:58223
BQB_IS_VERSION_OF
C00015
c__atp ATP
C10H12N5O13P3 (-4)
c 2.7 mole mole m 3
BQB_IS
SBO:0000247
CHEBI:30616
BQB_IS_VERSION_OF
C00002
c__utp UTP
C9H11N2O15P3 (-4)
c 0.27 mole mole m 3
BQB_IS
SBO:0000247
CHEBI:46398
BQB_IS_VERSION_OF
C00075
e__gal D-galactose
C6H12O6
e 0.00012 mole mole m 3
c__gal1pM D-galactose 1-phosphate M*
C6H11O9P (-2)
c 0.0 mole mole m 3
BQB_IS
SBO:0000247
CHEBI:58336
BQB_IS_VERSION_OF
C00446
c__gal D-galactose
C6H12O6
c 0.00012 mole mole m 3
c__acptgalM Acceptor-galactose M*
C6H1206R
c 0.0 mole mole m 3
c__acptglc Acceptor-glucose
C6H1206R
c 0.0 mole mole m 3
c__galtolM D-galactitol M*
C6H14O6
c 0.0 mole mole m 3
e__galM D-galactose M*
C6H12O6
e 0.0 mole mole m 3
c__o2 O2
O2
c 0.0 mole mole m 3
c__glc6p D-glucose 6-phosphate
C6H11O9P (-2)
c 0.12 mole mole m 3
BQB_IS
SBO:0000247
CHEBI:58225
BQB_IS_VERSION_OF
C00668
c__adp ADP
C10H12N5O10P2 (-3)
c 1.2 mole mole m 3
BQB_IS
SBO:0000247
CHEBI:456216
BQB_IS_VERSION_OF
C00008
h__h2oM water M*
H2O
h 0.0 mole mole m 3
c__co2 CO2
CO2
c 0.0 mole mole m 3
c__nadp NADP
C21H25N7O17P3 (-3)
c 0.1 mole mole m 3
BQB_IS
SBO:0000247
CHEBI:58349
BQB_IS_VERSION_OF
C00006
c__hydron H+
H (1)
c 0.0 mole mole m 3
c__udpgalM UDP-D-galactose M*
C15H22N2O17P2 (-2)
c 0.0 mole mole m 3
BQB_IS
SBO:0000247
CHEBI:66914
BQB_IS_VERSION_OF
C00052
c__galM D-galactose M*
C6H12O6
c 0.0 mole mole m 3
c__galtol D-galactitol
C6H14O6
c 0.001 mole mole m 3
c__nadph NADPH
C21H26N7O17P3 (-4)
c 0.1 mole mole m 3
BQB_IS
SBO:0000247
CHEBI:57783
BQB_IS_VERSION_OF
C00005
c__glc6pM D-glucose 6-phosphate M*
C6H11O9P (-2)
c 0.0 mole mole m 3
BQB_IS
SBO:0000247
CHEBI:58225
BQB_IS_VERSION_OF
C00668
c__glc1pM D-glucose 1-phophate M*
C6H11O9P (-2)
c 0.0 mole mole m 3
c__udpglc UDP-D-glucose
C15H22N2O17P2 (-2)
c 0.34 mole mole m 3
BQB_IS
SBO:0000247
CHEBI:58885
BQB_IS_VERSION_OF
C00029
c__h2o water
H2O
c 0.0 mole mole m 3
c__gal1p D-galactose 1-phosphate
C6H11O9P (-2)
c 0.001 mole mole m 3
BQB_IS
SBO:0000247
CHEBI:58336
BQB_IS_VERSION_OF
C00446
c__h2 H2
H2
c 0.0 mole mole m 3
c__acptglcM Acceptor-glucose M*
C6H1206R
c 0.0 mole mole m 3
c__udpglcM UDP-D-glucose M*
C15H22N2O17P2 (-2)
c 0.0 mole mole m 3
BQB_IS
SBO:0000247
CHEBI:58885
BQB_IS_VERSION_OF
C00029
c__phos phosphate
HO4P (-2)
c 5.0 mole mole m 3
BQB_IS
SBO:0000247
CHEBI:43474
BQB_IS_VERSION_OF
C00009

Parameters [160] name value unit derived unit constant sbo cvterm
scale_f metabolic scaling factor 0.31 per_m3 1 m 3
y_cell width hepatocyte 9.4e-06 m m
x_cell length hepatocyte 2.5e-05 m m
f_cyto cytosolic fraction of hepatocyte 0.4 dimensionless None
Nf 1.0 dimensionless None
deficiency type of galactosemia 0.0 dimensionless None
REF_P reference protein amount 1.0 mM mole m 3
f_tissue parenchymal fraction of liver 0.8 dimensionless None
Vol_e volume external compartment Vol_h m3 m 3
Vol_c volume cytosol f_cyto Vol_h m3 m 3
A_m area plasma membrane x_cell x_cell m2 m 2
Vol_h volume hepatocyte x_cell x_cell y_cell m3 m 3
c__gal_tot c__gal c__galM mM mole m 3
e__gal_tot e__gal e__galM mM mole m 3
c__udpglc_tot c__udpglc c__udpglcM mM mole m 3
c__adp_bal ADP balance c__atp c__adp mM mole m 3
c__phos_bal Phosphate balance 3 c__atp 2 c__adp 3 c__utp 2 c__udp c__phos 2 c__ppi c__glc1p c__glc6p c__gal1p 2 c__udpglc 2 c__udpgal c__glc1pM c__glc6pM c__gal1pM 2 c__udpglcM 2 c__udpgalM mM mole m 3
c__glc6p_tot c__glc6p c__glc6pM mM mole m 3
c__gal1p_tot c__gal1p c__gal1pM mM mole m 3
c__scale scale_f Vol_h dimensionless None
c__galtol_tot c__galtol c__galtolM mM mole m 3
c__glc1p_tot c__glc1p c__glc1pM mM mole m 3
c__udpgal_tot c__udpgal c__udpgalM mM mole m 3
c__udp_bal UDP balance c__utp c__udp c__udpglc c__udpgal c__udpglcM c__udpgalM mM mole m 3
c__nadp_bal NADP balance c__nadp c__nadph mM mole m 3
GALK_PA 0.024 mole mole
GALK_keq 50.0 dimensionless None
GALK_k_gal1p 1.5 mM mole m 3
BQB_IS
SBO:0000027
14785
45367
BQB_IS_DESCRIBED_BY
12694189
15024738
GALK_k_adp 0.8 mM mole m 3
GALK_ki_gal1p 5.3 mM mole m 3
GALK_kcat 8.7 per_s 1 s
BQB_IS
SBO:0000025
14785
BQB_IS_DESCRIBED_BY
12694189
GALK_k_gal 0.14 mM mole m 3
BQB_IS
SBO:0000027
14785
45367
BQB_IS_DESCRIBED_BY
12694189
15024738
GALK_k_atp 0.034 mM mole m 3
BQB_IS
SBO:0000027
14792
BQB_IS_DESCRIBED_BY
12694189
c__GALK_P 1.0 mM mole m 3
c__GALK_V c__GALK_Vmax GALK_k_gal GALK_k_atp 1 1 c__gal1p_tot GALK_ki_gal1p 1 c__GALK_dm mole_per_s_per_mM2 m 6 mole s
c__GALK_Vb c__GALK_V c__gal1p_tot c__adp GALK_keq mole_per_s mole s
c__GALK_Vmax c__scale GALK_PA GALK_kcat c__GALK_P REF_P mole_per_s mole s
c__GALK_dm 1 c__gal_tot GALK_k_gal 1 c__atp GALK_k_atp 1 c__gal1p_tot GALK_k_gal1p 1 c__adp GALK_k_adp 1 dimensionless None
c__GALK_Vf c__GALK_V c__gal_tot c__atp mole_per_s mole s
IMP_f 0.05 dimensionless None
IMP_k_gal1p 0.35 mM mole m 3
c__IMP_P 1.0 mM mole m 3
c__IMP_dm 1 c__gal1p_tot IMP_k_gal1p dimensionless None
c__IMP_Vf c__IMP_Vmax IMP_k_gal1p c__gal1p_tot c__IMP_dm mole_per_s mole s
c__IMP_Vmax IMP_f c__GALK_Vmax c__IMP_P REF_P mole_per_s mole s
ATPS_f 100.0 dimensionless None
ATPS_keq 0.58 per_mM m 3 mole
ATPS_k_adp 0.1 mM mole m 3
ATPS_k_atp 0.5 mM mole m 3
ATPS_k_phos 0.1 mM mole m 3
c__ATPS_P 1.0 mM mole m 3
c__ATPS_Vmax ATPS_f c__GALK_Vmax c__ATPS_P REF_P mole_per_s mole s
ALDR_f 1000000.0 dimensionless None
ALDR_keq 4.0 dimensionless None
ALDR_k_gal 40.0 mM mole m 3
ALDR_k_galtol 40.0 mM mole m 3
ALDR_k_nadp 0.1 mM mole m 3
ALDR_k_nadph 0.1 mM mole m 3
c__ALDR_P 1.0 mM mole m 3
c__ALDR_Vb c__ALDR_V c__galtol_tot c__nadp ALDR_keq mole_per_s mole s
c__ALDR_V c__ALDR_Vmax ALDR_k_gal ALDR_k_nadp 1 c__ALDR_dm mole_per_s_per_mM2 m 6 mole s
c__ALDR_Vmax ALDR_f c__GALK_Vmax c__ALDR_P REF_P mole_per_s mole s
c__ALDR_dm 1 c__gal_tot ALDR_k_gal 1 c__nadph ALDR_k_nadph 1 c__galtol_tot ALDR_k_galtol 1 c__nadp ALDR_k_nadp 1 dimensionless None
c__ALDR_Vf c__ALDR_V c__gal_tot c__nadph mole_per_s mole s
NADPR_f 1e-10 dimensionless None
NADPR_keq 1.0 dimensionless None
NADPR_k_nadp 0.015 mM mole m 3
NADPR_ki_nadph 0.01 mM mole m 3
c__NADPR_P 1.0 mM mole m 3
c__NADPR_Vmax NADPR_f c__ALDR_Vmax c__NADPR_P REF_P mole_per_s mole s
GALT_f 0.01 dimensionless None
GALT_keq 1.0 dimensionless None
GALT_k_glc1p 0.37 mM mole m 3
GALT_k_udpgal 0.5 mM mole m 3
GALT_ki_utp 0.13 mM mole m 3
GALT_ki_udp 0.35 mM mole m 3
GALT_vm 804.0 dimensionless None
GALT_k_gal1p 1.25 mM mole m 3
GALT_k_udpglc 0.43 mM mole m 3
c__GALT_P 1.0 mM mole m 3
c__GALT_Vf c__GALT_V c__gal1p_tot c__udpglc_tot mole_per_s mole s
c__GALT_V c__GALT_Vmax GALT_k_gal1p GALT_k_udpglc 1 c__GALT_dm mole_per_s_per_mM2 m 6 mole s
c__GALT_Vmax c__GALT_P REF_P GALT_f c__GALK_Vmax GALT_vm mole_per_s mole s
c__GALT_Vb c__GALT_V c__glc1p_tot c__udpgal_tot GALT_keq mole_per_s mole s
c__GALT_dm 1 c__gal1p_tot GALT_k_gal1p 1 c__udpglc_tot GALT_k_udpglc c__udp GALT_ki_udp c__utp GALT_ki_utp 1 c__glc1p_tot GALT_k_glc1p 1 c__udpgal_tot GALT_k_udpgal 1 dimensionless None
GALE_f 0.3 dimensionless None
GALE_PA 0.0278 s s
GALE_kcat 36.0 per_s 1 s
GALE_keq 0.33 dimensionless None
GALE_k_udpglc 0.069 mM mole m 3
GALE_k_udpgal 0.3 mM mole m 3
c__GALE_P 1.0 mM mole m 3
c__GALE_Vb c__GALE_V c__udpgal_tot GALE_keq mole_per_s mole s
c__GALE_V c__GALE_Vmax GALE_k_udpglc 1 c__GALE_dm mole_per_s_per_mM m 3 s
c__GALE_Vmax GALE_f c__GALK_Vmax GALE_PA GALE_kcat c__GALE_P REF_P mole_per_s mole s
c__GALE_dm 1 c__udpglc_tot GALE_k_udpglc c__udpgal_tot GALE_k_udpgal dimensionless None
c__GALE_Vf c__GALE_V c__udpglc_tot mole_per_s mole s
UGP_f 2000.0 dimensionless None
UGP_keq 0.45 dimensionless None
UGP_k_utp 0.563 mM mole m 3
UGP_k_glc1p 0.172 mM mole m 3
UGP_k_udpglc 0.049 mM mole m 3
UGP_k_ppi 0.166 mM mole m 3
UGP_k_gal1p 5.0 mM mole m 3
UGP_k_udpgal 0.42 mM mole m 3
UGP_ki_utp 0.643 mM mole m 3
UGP_ki_udpglc 0.643 mM mole m 3
c__UGP_P 1.0 mM mole m 3
c__UGP_Vf c__UGP_V c__glc1p_tot c__utp mole_per_s mole s
c__UGP_V c__UGP_Vmax UGP_k_utp UGP_k_glc1p 1 c__UGP_dm mole_per_s_per_mM2 m 6 mole s
c__UGP_Vmax UGP_f c__GALK_Vmax c__UGP_P REF_P mole_per_s mole s
c__UGP_dm 1 c__utp UGP_k_utp c__udpglc_tot UGP_ki_udpglc 1 c__glc1p_tot UGP_k_glc1p c__gal1p_tot UGP_k_gal1p 1 c__udpglc_tot UGP_k_udpglc c__udpgal_tot UGP_k_udpgal c__utp UGP_ki_utp 1 c__ppi UGP_k_ppi 1 dimensionless None
c__UGP_Vb c__UGP_V c__udpglc_tot c__ppi UGP_keq mole_per_s mole s
UGALP_f 0.01 dimensionless None
c__UGALP_Vb c__UGALP_V c__udpgal_tot c__ppi UGP_keq mole_per_s mole s
c__UGALP_V UGALP_f c__UGP_Vmax UGP_k_utp UGP_k_gal1p 1 c__UGP_dm mole_per_s_per_mM2 m 6 mole s
c__UGALP_Vf c__UGALP_V c__gal1p_tot c__utp mole_per_s mole s
PPASE_f 0.05 dimensionless None
PPASE_k_ppi 0.07 mM mole m 3
PPASE_n 4.0 dimensionless None
c__PPASE_P 1.0 mM mole m 3
c__PPASE_Vmax PPASE_f c__UGP_Vmax c__PPASE_P REF_P mole_per_s mole s
NDKU_f 2.0 dimensionless None
NDKU_keq 1.0 dimensionless None
NDKU_k_atp 1.33 mM mole m 3
NDKU_k_adp 0.042 mM mole m 3
NDKU_k_utp 27.0 mM mole m 3
NDKU_k_udp 0.19 mM mole m 3
c__NDKU_P 1.0 mM mole m 3
c__NDKU_Vmax NDKU_f c__UGP_Vmax c__NDKU_P REF_P mole_per_s mole s
PGM1_f 50.0 dimensionless None
PGM1_keq 10.0 dimensionless None
PGM1_k_glc6p 0.67 mM mole m 3
PGM1_k_glc1p 0.045 mM mole m 3
c__PGM1_P 1.0 mM mole m 3
c__PGM1_Vb c__PGM1_V c__glc6p_tot PGM1_keq mole_per_s mole s
c__PGM1_V c__PGM1_Vmax PGM1_k_glc1p 1 c__PGM1_dm mole_per_s_per_mM m 3 s
c__PGM1_Vmax PGM1_f c__GALK_Vmax c__PGM1_P REF_P mole_per_s mole s
c__PGM1_dm 1 c__glc1p_tot PGM1_k_glc1p c__glc6p_tot PGM1_k_glc6p dimensionless None
c__PGM1_Vf c__PGM1_V c__glc1p_tot mole_per_s mole s
GLY_f 0.1 dimensionless None
GLY_k_glc6p 0.12 mM mole m 3
GLY_k_p 0.2 mM mole m 3
c__GLY_P 1.0 mM mole m 3
c__GLY_Vmax GLY_f c__PGM1_Vmax c__GLY_P REF_P mole_per_s mole s
GTF_f 0.02 dimensionless None
GTF_k_udpgal 0.1 mM mole m 3
GTF_k_udpglc 0.1 mM mole m 3
c__GTF_P 1.0 mM mole m 3
c__GTFGAL_Vf c__GTF_Vmax GTF_k_udpgal c__udpgal_tot 1 c__udpgal_tot GTF_k_udpgal mole_per_s mole s
c__GTF_Vmax GTF_f c__GALK_Vmax c__GTF_P REF_P mole_per_s mole s
c__GTFGLC_Vf 0 c__GTF_Vmax GTF_k_udpglc c__udpglc_tot 1 c__udpglc_tot GTF_k_udpglc mole_per_s mole s
H2OT_f 8.0 mole_per_s mole s
H2OT_k 1.0 mM mole m 3
c__H2OT_Vmax H2OT_f Nf c__scale mole_per_s mole s
GLUT2_f 17.0 mole_per_s mole s
GLUT2_k_gal 27.8 mM mole m 3
c__GLUT2_P 1.0 mM mole m 3
c__GLUT2_V c__GLUT2_Vmax GLUT2_k_gal 1 1 e__gal_tot GLUT2_k_gal c__gal_tot GLUT2_k_gal mole_per_s_per_mM m 3 s
c__GLUT2_Vmax GLUT2_f Nf c__scale c__GLUT2_P REF_P mole_per_s mole s

InitialAssignments [4]   assignment derived units sbo cvterm
Vol_e = Vol_h m 3
Vol_c = f_cyto Vol_h m 3
A_m = x_cell x_cell m 2
Vol_h = x_cell x_cell y_cell m 3

Rules [64]   assignment derived units sbo cvterm
h = Vol_h m 3
c = Vol_c m 3
e = Vol_e m 3
m = A_m m 2
c__gal_tot = c__gal c__galM mole m 3
e__gal_tot = e__gal e__galM mole m 3
c__udpglc_tot = c__udpglc c__udpglcM mole m 3
c__adp_bal = c__atp c__adp mole m 3
c__phos_bal = 3 c__atp 2 c__adp 3 c__utp 2 c__udp c__phos 2 c__ppi c__glc1p c__glc6p c__gal1p 2 c__udpglc 2 c__udpgal c__glc1pM c__glc6pM c__gal1pM 2 c__udpglcM 2 c__udpgalM mole m 3
c__glc6p_tot = c__glc6p c__glc6pM mole m 3
c__gal1p_tot = c__gal1p c__gal1pM mole m 3
c__scale = scale_f Vol_h None
c__galtol_tot = c__galtol c__galtolM mole m 3
c__glc1p_tot = c__glc1p c__glc1pM mole m 3
c__udpgal_tot = c__udpgal c__udpgalM mole m 3
c__udp_bal = c__utp c__udp c__udpglc c__udpgal c__udpglcM c__udpgalM mole m 3
c__nadp_bal = c__nadp c__nadph mole m 3
c__GALK_V = c__GALK_Vmax GALK_k_gal GALK_k_atp 1 1 c__gal1p_tot GALK_ki_gal1p 1 c__GALK_dm m 6 mole s
c__GALK_Vb = c__GALK_V c__gal1p_tot c__adp GALK_keq mole s
c__GALK_Vmax = c__scale GALK_PA GALK_kcat c__GALK_P REF_P mole s
c__GALK_dm = 1 c__gal_tot GALK_k_gal 1 c__atp GALK_k_atp 1 c__gal1p_tot GALK_k_gal1p 1 c__adp GALK_k_adp 1 None
c__GALK_Vf = c__GALK_V c__gal_tot c__atp mole s
c__IMP_dm = 1 c__gal1p_tot IMP_k_gal1p None
c__IMP_Vf = c__IMP_Vmax IMP_k_gal1p c__gal1p_tot c__IMP_dm mole s
c__IMP_Vmax = IMP_f c__GALK_Vmax c__IMP_P REF_P mole s
c__ATPS_Vmax = ATPS_f c__GALK_Vmax c__ATPS_P REF_P mole s
c__ALDR_Vb = c__ALDR_V c__galtol_tot c__nadp ALDR_keq mole s
c__ALDR_V = c__ALDR_Vmax ALDR_k_gal ALDR_k_nadp 1 c__ALDR_dm m 6 mole s
c__ALDR_Vmax = ALDR_f c__GALK_Vmax c__ALDR_P REF_P mole s
c__ALDR_dm = 1 c__gal_tot ALDR_k_gal 1 c__nadph ALDR_k_nadph 1 c__galtol_tot ALDR_k_galtol 1 c__nadp ALDR_k_nadp 1 None
c__ALDR_Vf = c__ALDR_V c__gal_tot c__nadph mole s
c__NADPR_Vmax = NADPR_f c__ALDR_Vmax c__NADPR_P REF_P mole s
c__GALT_Vf = c__GALT_V c__gal1p_tot c__udpglc_tot mole s
c__GALT_V = c__GALT_Vmax GALT_k_gal1p GALT_k_udpglc 1 c__GALT_dm m 6 mole s
c__GALT_Vmax = c__GALT_P REF_P GALT_f c__GALK_Vmax GALT_vm mole s
c__GALT_Vb = c__GALT_V c__glc1p_tot c__udpgal_tot GALT_keq mole s
c__GALT_dm = 1 c__gal1p_tot GALT_k_gal1p 1 c__udpglc_tot GALT_k_udpglc c__udp GALT_ki_udp c__utp GALT_ki_utp 1 c__glc1p_tot GALT_k_glc1p 1 c__udpgal_tot GALT_k_udpgal 1 None
c__GALE_Vb = c__GALE_V c__udpgal_tot GALE_keq mole s
c__GALE_V = c__GALE_Vmax GALE_k_udpglc 1 c__GALE_dm m 3 s
c__GALE_Vmax = GALE_f c__GALK_Vmax GALE_PA GALE_kcat c__GALE_P REF_P mole s
c__GALE_dm = 1 c__udpglc_tot GALE_k_udpglc c__udpgal_tot GALE_k_udpgal None
c__GALE_Vf = c__GALE_V c__udpglc_tot mole s
c__UGP_Vf = c__UGP_V c__glc1p_tot c__utp mole s
c__UGP_V = c__UGP_Vmax UGP_k_utp UGP_k_glc1p 1 c__UGP_dm m 6 mole s
c__UGP_Vmax = UGP_f c__GALK_Vmax c__UGP_P REF_P mole s
c__UGP_dm = 1 c__utp UGP_k_utp c__udpglc_tot UGP_ki_udpglc 1 c__glc1p_tot UGP_k_glc1p c__gal1p_tot UGP_k_gal1p 1 c__udpglc_tot UGP_k_udpglc c__udpgal_tot UGP_k_udpgal c__utp UGP_ki_utp 1 c__ppi UGP_k_ppi 1 None
c__UGP_Vb = c__UGP_V c__udpglc_tot c__ppi UGP_keq mole s
c__UGALP_Vb = c__UGALP_V c__udpgal_tot c__ppi UGP_keq mole s
c__UGALP_V = UGALP_f c__UGP_Vmax UGP_k_utp UGP_k_gal1p 1 c__UGP_dm m 6 mole s
c__UGALP_Vf = c__UGALP_V c__gal1p_tot c__utp mole s
c__PPASE_Vmax = PPASE_f c__UGP_Vmax c__PPASE_P REF_P mole s
c__NDKU_Vmax = NDKU_f c__UGP_Vmax c__NDKU_P REF_P mole s
c__PGM1_Vb = c__PGM1_V c__glc6p_tot PGM1_keq mole s
c__PGM1_V = c__PGM1_Vmax PGM1_k_glc1p 1 c__PGM1_dm m 3 s
c__PGM1_Vmax = PGM1_f c__GALK_Vmax c__PGM1_P REF_P mole s
c__PGM1_dm = 1 c__glc1p_tot PGM1_k_glc1p c__glc6p_tot PGM1_k_glc6p None
c__PGM1_Vf = c__PGM1_V c__glc1p_tot mole s
c__GLY_Vmax = GLY_f c__PGM1_Vmax c__GLY_P REF_P mole s
c__GTFGAL_Vf = c__GTF_Vmax GTF_k_udpgal c__udpgal_tot 1 c__udpgal_tot GTF_k_udpgal mole s
c__GTF_Vmax = GTF_f c__GALK_Vmax c__GTF_P REF_P mole s
c__GTFGLC_Vf = 0 c__GTF_Vmax GTF_k_udpglc c__udpglc_tot 1 c__udpglc_tot GTF_k_udpglc mole s
c__H2OT_Vmax = H2OT_f Nf c__scale mole s
c__GLUT2_V = c__GLUT2_Vmax GLUT2_k_gal 1 1 e__gal_tot GLUT2_k_gal c__gal_tot GLUT2_k_gal m 3 s
c__GLUT2_Vmax = GLUT2_f Nf c__scale c__GLUT2_P REF_P mole s

Reactions [31] name equation modifiers formula derived units sbo cvterm
c__GALK Galactokinase [c__] c__gal + c__atp ⇆ c__gal1p + c__adp + c__hydron c__galM
c__gal1pM
c__gal c__gal_tot c__GALK_Vf c__gal1p c__gal1p_tot c__GALK_Vb mole s
c__GALKM Galactokinase M [c__] c__galM + c__atp ➞ c__gal1pM + c__adp + c__hydron c__gal
c__gal1p
c__galM c__gal_tot c__GALK_Vf c__gal1pM c__gal1p_tot c__GALK_Vb mole s
c__IMP Inositol monophosphatase [c__] c__gal1p + c__h2o ➞ c__gal + c__phos c__gal1pM
c__gal1p c__gal1p_tot c__IMP_Vf mole s
c__IMPM Inositol monophosphatase M [c__] c__gal1pM + c__h2o ➞ c__galM + c__phos c__gal1p
c__gal1pM c__gal1p_tot c__IMP_Vf mole s
c__ATPS ATP synthase [c__] c__adp + c__phos + c__hydron ⇆ c__atp + c__h2o c__ATPS_Vmax ATPS_k_adp ATPS_k_phos c__adp c__phos c__atp ATPS_keq 1 c__adp ATPS_k_adp 1 c__phos ATPS_k_phos c__atp ATPS_k_atp mole s
c__ALDR Aldose reductase [c__] c__gal + c__nadph + c__hydron ⇆ c__galtol + c__nadp c__galM
c__galtolM
c__gal c__gal_tot c__ALDR_Vf c__galtol c__galtol_tot c__ALDR_Vb mole s
c__ALDRM Aldose reductase M [c__] c__galM + c__nadph + c__hydron ⇆ c__galtolM + c__nadp c__gal
c__galtol
c__galM c__gal_tot c__ALDR_Vf c__galtolM c__galtol_tot c__ALDR_Vb mole s
c__NADPR NADP Reductase [c__] c__nadp + c__h2 ⇆ c__nadph + c__hydron c__NADPR_Vmax NADPR_k_nadp c__nadp c__nadph NADPR_keq 1 c__nadp NADPR_k_nadp c__nadph NADPR_ki_nadph mole s
c__GALT Galactose-1-phosphate uridyl transferase [c__] c__gal1p + c__udpglc ⇆ c__glc1p + c__udpgal c__utp
c__udp
c__gal1pM
c__udpglcM
c__glc1p
c__udpgalM
c__gal1p c__gal1p_tot c__udpglc c__udpglc_tot c__GALT_Vf c__glc1p c__glc1p_tot c__udpgal c__udpgal_tot c__GALT_Vb mole s
c__GALTM1 Galactose-1-phosphate uridyl transferase M1 [c__] c__gal1pM + c__udpglc ⇆ c__glc1p + c__udpgalM c__utp
c__udp
c__gal1p
c__udpglcM
c__glc1pM
c__udpgal
c__gal1pM c__gal1p_tot c__udpglc c__udpglc_tot c__GALT_Vf c__glc1p c__glc1p_tot c__udpgalM c__udpgal_tot c__GALT_Vb mole s
c__GALTM2 Galactose-1-phosphate uridyl transferase M2 [c__] c__gal1p + c__udpglcM ⇆ c__glc1pM + c__udpgal c__utp
c__udp
c__gal1pM
c__udpglc
c__glc1p
c__udpgalM
c__gal1p c__gal1p_tot c__udpglcM c__udpglc_tot c__GALT_Vf c__glc1pM c__glc1p_tot c__udpgal c__udpgal_tot c__GALT_Vb mole s
c__GALTM3 Galactose-1-phosphate uridyl transferase M3 [c__] c__gal1pM + c__udpglcM ⇆ c__glc1pM + c__udpgalM c__utp
c__udp
c__gal1p
c__udpglc
c__glc1p
c__udpgal
c__gal1pM c__gal1p_tot c__udpglcM c__udpglc_tot c__GALT_Vf c__glc1pM c__glc1p_tot c__udpgalM c__udpgal_tot c__GALT_Vb mole s
c__GALE UDP-glucose 4-epimerase [c__] c__udpglc ⇆ c__udpgal c__udpglcM
c__udpgalM
c__udpglc c__udpglc_tot c__GALE_Vf c__udpgal c__udpgal_tot c__GALE_Vb mole s
c__GALEM UDP-glucose 4-epimerase M [c__] c__udpglcM ⇆ c__udpgalM c__udpglc
c__udpgal
c__udpglcM c__udpglc_tot c__GALE_Vf c__udpgalM c__udpgal_tot c__GALE_Vb mole s
c__UGP UDP-glucose pyrophosphorylase [c__] c__glc1p + c__utp + c__hydron ⇆ c__udpglc + c__ppi c__glc1pM
c__udpglcM
c__gal1p
c__gal1pM
c__udpgal
c__udpgalM
c__glc1p c__glc1p_tot c__UGP_Vf c__udpglc c__udpglc_tot c__UGP_Vb mole s
c__UGPM UDP-glucose pyrophosphorylase M [c__] c__glc1pM + c__utp + c__hydron ⇆ c__udpglcM + c__ppi c__glc1p
c__udpglc
c__gal1p
c__gal1pM
c__udpgal
c__udpgalM
c__glc1pM c__glc1p_tot c__UGP_Vf c__udpglcM c__udpglc_tot c__UGP_Vb mole s
c__UGALP UDP-galactose pyrophosphorylase [c__] c__gal1p + c__utp + c__hydron ⇆ c__udpgal + c__ppi c__glc1p
c__glc1pM
c__udpglc
c__udpglcM
c__gal1pM
c__udpgalM
c__gal1p c__gal1p_tot c__UGALP_Vf c__udpgal c__udpgal_tot c__UGALP_Vb mole s
c__UGALPM UDP-galactose pyrophosphorylase M [c__] c__gal1pM + c__utp + c__hydron ⇆ c__udpgalM + c__ppi c__glc1p
c__glc1pM
c__udpglc
c__udpglcM
c__gal1p
c__udpgal
c__gal1pM c__gal1p_tot c__UGALP_Vf c__udpgalM c__udpgal_tot c__UGALP_Vb mole s
c__PPASE Pyrophosphatase [c__] c__ppi + c__h2o ➞ 2.0 c__phos + c__hydron c__PPASE_Vmax c__ppi PPASE_n c__ppi PPASE_n PPASE_k_ppi PPASE_n mole s
c__NDKU ATP:UDP phosphotransferase [c__] c__atp + c__udp ⇆ c__adp + c__utp c__NDKU_Vmax NDKU_k_atp NDKU_k_udp c__atp c__udp c__adp c__utp NDKU_keq 1 c__atp NDKU_k_atp 1 c__udp NDKU_k_udp 1 c__adp NDKU_k_adp 1 c__utp NDKU_k_utp 1 mole s
c__PGM1 Phosphoglucomutase-1 [c__] c__glc1p ⇆ c__glc6p c__glc1pM
c__glc6pM
c__glc1p c__glc1p_tot c__PGM1_Vf c__glc6p c__glc6p_tot c__PGM1_Vb mole s
c__PGM1M Phosphoglucomutase-1 M [c__] c__glc1pM ⇆ c__glc6pM c__glc1p
c__glc6p
c__glc1pM c__glc1p_tot c__PGM1_Vf c__glc6pM c__glc6p_tot c__PGM1_Vb mole s
c__GLY Glycolysis [c__] c__glc6p + 5.0 c__o2 ⇆ c__phos + 6.0 c__co2 + 5.0 c__h2o c__GLY_Vmax GLY_k_glc6p c__glc6p GLY_k_glc6p c__phos c__phos GLY_k_p mole s
c__GLYM Glycolysis M [c__] c__glc6pM + 5.0 c__o2 ➞ c__phos + 6.0 c__co2 + 5.0 c__h2o c__GLY_Vmax GLY_k_glc6p c__glc6pM c__phos c__phos GLY_k_p mole s
c__GTFGAL Glycosyltransferase galactose [c__] c__udpgal + c__acpt ➞ c__udp + c__acptgal + c__hydron c__udpgalM
c__udpgal c__udpgal_tot c__GTFGAL_Vf mole s
c__GTFGALM Glycosyltransferase galactose M [c__] c__udpgalM + c__acpt ➞ c__udp + c__acptgalM + c__hydron c__udpgal
c__udpgalM c__udpgal_tot c__GTFGAL_Vf mole s
c__GTFGLC Glycosyltransferase glucose [c__] c__udpglc + c__acpt ➞ c__udp + c__acptglc + c__hydron c__udpglcM
c__udpglc c__udpglc_tot c__GTFGLC_Vf mole s
c__GTFGLCM Glycosyltransferase glucose M [c__] c__udpglcM + c__acpt ➞ c__udp + c__acptglcM + c__hydron c__udpglc
c__udpglcM c__udpglc_tot c__GTFGLC_Vf mole s
e__H2OTM H2O M transport [e__] e__h2oM ⇆ h__h2oM c__H2OT_Vmax H2OT_k e__h2oM h__h2oM mole s
e__GLUT2_GAL galactose transport [e__] e__gal ⇆ c__gal e__galM
c__galM
c__GLUT2_V e__gal c__gal mole s
BQB_IS
SBO:0000185
P11168
BQB_HAS_PROPERTY
OMIM:227810
e__GLUT2_GALM galactose transport M [e__] e__galM ⇆ c__galM e__gal
c__gal
c__GLUT2_V e__galM c__galM mole s
BQB_IS
SBO:0000185
P11168
BQB_HAS_PROPERTY
227810