E.coli core DFBA model

Model version: 7

TOP model

Main comp DFBA model by combining fba, update and bounds model with additional kinetics in the top model.

Description

This is a metabolism model of Escherichia coli str. K-12 substr. MG1655 in SBML format.

The content of this model has been carefully created in a manual research effort. This file has been exported from the software COBRApy and further processed with the JSBML-based ModelPolisher application.
This file has been produced by the Systems Biology Research Group using BiGG Models knowledge-base version of Nov 21, 2016, where it is currently hosted and identified by: e_coli_core.

Terms of use

Copyright © 2016 The Regents of the University of California.

Redistribution and use of any part of this model from BiGG Models knowledge-base, with or without modification, are permitted provided that the following conditions are met:

  1. Redistributions of this SBML file must retain the above copyright notice, this list of conditions and the following disclaimer.
  2. Redistributions in a different form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution.
This model is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

For specific licensing terms about this particular model and regulations of commercial use, see this model in BiGG Models knowledge-base.

References

When using content from BiGG Models knowledge-base in your research works, please cite
King ZA, Lu JS, Dräger A, Miller PC, Federowicz S, Lerman JA, Ebrahim A, Palsson BO, and Lewis NE. (2015).
BiGG Models: A platform for integrating, standardizing, and sharing genome-scale models. Nucl Acids Res. doi:10.1093/nar/gkv1049

Model : ecoli_top_flat

Creator
Matthias, Koenig, Humboldt University Berlin, konigmatt@googlemail.com
Created: 2017-06-12 17:02
Modified: 2017-06-12 17:02

id ecoli_top_flat meta_ecoli_top
nameecoli (TOP)_flat
timeh
substancemmol
extentmmol
volumel
aream2
lengthm
SBML model L3V1 fbc-V2 groups-V1

FunctionDefinitions [2] name math sbo cvterm
bounds__max min x y x x y y
bounds__min max x y x x y y

UnitDefinitions [14] name units sbo cvterm
h 3600 s
g g
m m
m2 m 2
l litre
mmol 10 3 mole
per_h 1 3600 s
mmol_per_h 10 3 mole 3600 s
mmol_per_hg 10 3 mole g 3600 s
mmol_per_l 10 3 mole litre
l_per_mmol litre 10 3 mole
g_per_l g litre
g_per_mmol g 10 3 mole
fba__mmol_per_gDW_per_hr 10 3 mole g 3600 s

Compartments [3] name size constant spatial dimensions units derived units sbo cvterm
bioreactor bioreactor 1.0 3 l litre
fba__c fba___4b1e4f0f-bcca-42b1-b7d0-484ec9bbf3b6 cytosol l litre
BQB_IS
c
fba__e fba__cb207f38-8131-42d4-a528-217b1863e93a extracellular space l litre
BQB_IS
e

Species [95] name compartment boundary condition constant initial amount initial concentration substance units derived units sbo cvterm
mal__L_e L-Malate bioreactor 1.0 mmol 10 3 mole litre
acald_e Acetaldehyde bioreactor 1.0 mmol 10 3 mole litre
pyr_e Pyruvate bioreactor 1.0 mmol 10 3 mole litre
glc__D_e D-Glucose bioreactor 20.0 mmol 10 3 mole litre
etoh_e Ethanol bioreactor 1.0 mmol 10 3 mole litre
nh4_e Ammonium bioreactor 1.0 mmol 10 3 mole litre
h2o_e H2O bioreactor 20.0 mmol 10 3 mole litre
ac_e Acetate bioreactor 1.0 mmol 10 3 mole litre
akg_e 2-Oxoglutarate bioreactor 1.0 mmol 10 3 mole litre
co2_e CO2 bioreactor 1.0 mmol 10 3 mole litre
lac__D_e D-Lactate bioreactor 1.0 mmol 10 3 mole litre
fum_e Fumarate bioreactor 1.0 mmol 10 3 mole litre
fru_e D-Fructose bioreactor 1.0 mmol 10 3 mole litre
for_e Formate bioreactor 1.0 mmol 10 3 mole litre
gln__L_e L-Glutamine bioreactor 10.0 mmol 10 3 mole litre
succ_e Succinate bioreactor 1.0 mmol 10 3 mole litre
h_e H+ bioreactor 1.0 mmol 10 3 mole litre
pi_e Phosphate bioreactor 1.0 mmol 10 3 mole litre
X biomass bioreactor 0.001 mmol 10 3 mole litre
glu__L_e L-Glutamate bioreactor 1.0 mmol 10 3 mole litre
o2_e O2 bioreactor 1.0 mmol 10 3 mole litre
dummy_S dummy_S bioreactor 0.0 mmol 10 3 mole litre
fba__M_13dpg_c fba__M_13dpg_c 3-Phospho-D-glyceroyl phosphate
C3H4O10P2
fba__c 0.0 mmol 10 3 mole litre
fba__M_2pg_c fba__M_2pg_c D-Glycerate 2-phosphate
C3H4O7P
fba__c 0.0 mmol 10 3 mole litre
fba__M_3pg_c fba__M_3pg_c 3-Phospho-D-glycerate
C3H4O7P
fba__c 0.0 mmol 10 3 mole litre
fba__M_6pgc_c fba__M_6pgc_c 6-Phospho-D-gluconate
C6H10O10P
fba__c 0.0 mmol 10 3 mole litre
fba__M_6pgl_c fba__M_6pgl_c 6-phospho-D-glucono-1,5-lactone
C6H9O9P
fba__c 0.0 mmol 10 3 mole litre
fba__ac_c fba__M_ac_c Acetate
C2H3O2
fba__c 0.0 mmol 10 3 mole litre
fba__ac_e fba__M_ac_e Acetate
C2H3O2
fba__e 0.0 mmol 10 3 mole litre
fba__acald_c fba__M_acald_c Acetaldehyde
C2H4O
fba__c 0.0 mmol 10 3 mole litre
fba__acald_e fba__M_acald_e Acetaldehyde
C2H4O
fba__e 0.0 mmol 10 3 mole litre
fba__accoa_c fba__M_accoa_c Acetyl-CoA
C23H34N7O17P3S
fba__c 0.0 mmol 10 3 mole litre
fba__acon_C_c fba__M_acon_C_c Cis-Aconitate
C6H3O6
fba__c 0.0 mmol 10 3 mole litre
fba__actp_c fba__M_actp_c Acetyl phosphate
C2H3O5P
fba__c 0.0 mmol 10 3 mole litre
fba__adp_c fba__M_adp_c ADP
C10H12N5O10P2
fba__c 0.0 mmol 10 3 mole litre
fba__akg_c fba__M_akg_c 2-Oxoglutarate
C5H4O5
fba__c 0.0 mmol 10 3 mole litre
fba__akg_e fba__M_akg_e 2-Oxoglutarate
C5H4O5
fba__e 0.0 mmol 10 3 mole litre
fba__amp_c fba__M_amp_c AMP
C10H12N5O7P
fba__c 0.0 mmol 10 3 mole litre
fba__atp_c fba__M_atp_c ATP
C10H12N5O13P3
fba__c 0.0 mmol 10 3 mole litre
fba__cit_c fba__M_cit_c Citrate
C6H5O7
fba__c 0.0 mmol 10 3 mole litre
fba__co2_c fba__M_co2_c CO2
CO2
fba__c 0.0 mmol 10 3 mole litre
fba__co2_e fba__M_co2_e CO2
CO2
fba__e 0.0 mmol 10 3 mole litre
fba__coa_c fba__M_coa_c Coenzyme A
C21H32N7O16P3S
fba__c 0.0 mmol 10 3 mole litre
fba__dhap_c fba__M_dhap_c Dihydroxyacetone phosphate
C3H5O6P
fba__c 0.0 mmol 10 3 mole litre
fba__e4p_c fba__M_e4p_c D-Erythrose 4-phosphate
C4H7O7P
fba__c 0.0 mmol 10 3 mole litre
fba__etoh_c fba__M_etoh_c Ethanol
C2H6O
fba__c 0.0 mmol 10 3 mole litre
fba__etoh_e fba__M_etoh_e Ethanol
C2H6O
fba__e 0.0 mmol 10 3 mole litre
fba__f6p_c fba__M_f6p_c D-Fructose 6-phosphate
C6H11O9P
fba__c 0.0 mmol 10 3 mole litre
fba__fdp_c fba__M_fdp_c D-Fructose 1,6-bisphosphate
C6H10O12P2
fba__c 0.0 mmol 10 3 mole litre
fba__for_c fba__M_for_c Formate
CH1O2
fba__c 0.0 mmol 10 3 mole litre
fba__for_e fba__M_for_e Formate
CH1O2
fba__e 0.0 mmol 10 3 mole litre
fba__fru_e fba__M_fru_e D-Fructose
C6H12O6
fba__e 0.0 mmol 10 3 mole litre
fba__fum_c fba__M_fum_c Fumarate
C4H2O4
fba__c 0.0 mmol 10 3 mole litre
fba__fum_e fba__M_fum_e Fumarate
C4H2O4
fba__e 0.0 mmol 10 3 mole litre
fba__g3p_c fba__M_g3p_c Glyceraldehyde 3-phosphate
C3H5O6P
fba__c 0.0 mmol 10 3 mole litre
fba__g6p_c fba__M_g6p_c D-Glucose 6-phosphate
C6H11O9P
fba__c 0.0 mmol 10 3 mole litre
fba__glc__D_e fba__M_glc__D_e D-Glucose
C6H12O6
fba__e 0.0 mmol 10 3 mole litre
fba__gln__L_c fba__M_gln__L_c L-Glutamine
C5H10N2O3
fba__c 0.0 mmol 10 3 mole litre
fba__gln__L_e fba__M_gln__L_e L-Glutamine
C5H10N2O3
fba__e 0.0 mmol 10 3 mole litre
fba__glu__L_c fba__M_glu__L_c L-Glutamate
C5H8NO4
fba__c 0.0 mmol 10 3 mole litre
fba__glu__L_e fba__M_glu__L_e L-Glutamate
C5H8NO4
fba__e 0.0 mmol 10 3 mole litre
fba__glx_c fba__M_glx_c Glyoxylate
C2H1O3
fba__c 0.0 mmol 10 3 mole litre
fba__h2o_c fba__M_h2o_c H2O
H2O
fba__c 0.0 mmol 10 3 mole litre
fba__h2o_e fba__M_h2o_e H2O
H2O
fba__e 0.0 mmol 10 3 mole litre
fba__h_c fba__M_h_c H+
H
fba__c 0.0 mmol 10 3 mole litre
fba__h_e fba__M_h_e H+
H
fba__e 0.0 mmol 10 3 mole litre
fba__icit_c fba__M_icit_c Isocitrate
C6H5O7
fba__c 0.0 mmol 10 3 mole litre
fba__lac__D_c fba__M_lac__D_c D-Lactate
C3H5O3
fba__c 0.0 mmol 10 3 mole litre
fba__lac__D_e fba__M_lac__D_e D-Lactate
C3H5O3
fba__e 0.0 mmol 10 3 mole litre
fba__mal__L_c fba__M_mal__L_c L-Malate
C4H4O5
fba__c 0.0 mmol 10 3 mole litre
fba__mal__L_e fba__M_mal__L_e L-Malate
C4H4O5
fba__e 0.0 mmol 10 3 mole litre
fba__nad_c fba__M_nad_c Nicotinamide adenine dinucleotide
C21H26N7O14P2
fba__c 0.0 mmol 10 3 mole litre
fba__nadh_c fba__M_nadh_c Nicotinamide adenine dinucleotide - reduced
C21H27N7O14P2
fba__c 0.0 mmol 10 3 mole litre
fba__nadp_c fba__M_nadp_c Nicotinamide adenine dinucleotide phosphate
C21H25N7O17P3
fba__c 0.0 mmol 10 3 mole litre
fba__nadph_c fba__M_nadph_c Nicotinamide adenine dinucleotide phosphate - reduced
C21H26N7O17P3
fba__c 0.0 mmol 10 3 mole litre
fba__nh4_c fba__M_nh4_c Ammonium
H4N
fba__c 0.0 mmol 10 3 mole litre
fba__nh4_e fba__M_nh4_e Ammonium
H4N
fba__e 0.0 mmol 10 3 mole litre
fba__o2_c fba__M_o2_c O2
O2
fba__c 0.0 mmol 10 3 mole litre
fba__o2_e fba__M_o2_e O2
O2
fba__e 0.0 mmol 10 3 mole litre
fba__oaa_c fba__M_oaa_c Oxaloacetate
C4H2O5
fba__c 0.0 mmol 10 3 mole litre
fba__pep_c fba__M_pep_c Phosphoenolpyruvate
C3H2O6P
fba__c 0.0 mmol 10 3 mole litre
fba__pi_c fba__M_pi_c Phosphate
HO4P
fba__c 0.0 mmol 10 3 mole litre
fba__pi_e fba__M_pi_e Phosphate
HO4P
fba__e 0.0 mmol 10 3 mole litre
fba__pyr_c fba__M_pyr_c Pyruvate
C3H3O3
fba__c 0.0 mmol 10 3 mole litre
fba__pyr_e fba__M_pyr_e Pyruvate
C3H3O3
fba__e 0.0 mmol 10 3 mole litre
fba__q8_c fba__M_q8_c Ubiquinone-8
C49H74O4
fba__c 0.0 mmol 10 3 mole litre
fba__q8h2_c fba__M_q8h2_c Ubiquinol-8
C49H76O4
fba__c 0.0 mmol 10 3 mole litre
fba__r5p_c fba__M_r5p_c Alpha-D-Ribose 5-phosphate
C5H9O8P
fba__c 0.0 mmol 10 3 mole litre
fba__ru5p__D_c fba__M_ru5p__D_c D-Ribulose 5-phosphate
C5H9O8P
fba__c 0.0 mmol 10 3 mole litre
fba__s7p_c fba__M_s7p_c Sedoheptulose 7-phosphate
C7H13O10P
fba__c 0.0 mmol 10 3 mole litre
fba__succ_c fba__M_succ_c Succinate
C4H4O4
fba__c 0.0 mmol 10 3 mole litre
fba__succ_e fba__M_succ_e Succinate
C4H4O4
fba__e 0.0 mmol 10 3 mole litre
fba__succoa_c fba__M_succoa_c Succinyl-CoA
C25H35N7O19P3S
fba__c 0.0 mmol 10 3 mole litre
fba__xu5p__D_c fba__M_xu5p__D_c D-Xylulose 5-phosphate
C5H9O8P
fba__c 0.0 mmol 10 3 mole litre
fba__X biomass fba__c 0.001 mmol 10 3 mole

GeneProducts [137] name label associated species sbo cvterm
fba__b0351 fba__G_b0351 mhpF b0351
BQB_IS
P77580
BQB_IS_ENCODED_BY
GI:16128336; 945008; ABE-0001207; EG13625
fba__b1241 fba__G_b1241 adhE b1241
BQB_IS
P0A9Q7
BQB_IS_ENCODED_BY
GI:16129202; 945837; ABE-0004164; EG10031
fba__s0001 s0001
fba__b3115 fba__G_b3115 tdcD b3115
BQB_IS
P11868
BQB_IS_ENCODED_BY
GI:145698313; 947635; ABE-0010245; EG11172
fba__b1849 fba__G_b1849 purT b1849
BQB_IS
P33221
BQB_IS_ENCODED_BY
GI:16129802; 946368; ABE-0006162; EG11809
fba__b2296 fba__G_b2296 ackA b2296
BQB_IS
P0A6A3
BQB_IS_ENCODED_BY
GI:16130231; 946775; ABE-0007579; EG10027
fba__b0118 fba__G_b0118 acnB b0118
BQB_IS
P36683
BQB_IS_ENCODED_BY
GI:16128111; 944864; ABE-0000411; EG12316
fba__b1276 fba__G_b1276 acnA b1276
BQB_IS
P25516
BQB_IS_ENCODED_BY
GI:16129237; 946724; ABE-0004283; EG11325
fba__b0474 fba__G_b0474 adk b0474
BQB_IS
P69441
BQB_IS_ENCODED_BY
GI:16128458; 945097; ABE-0001645; EG10032
fba__b0116 fba__G_b0116 lpd b0116
BQB_IS
P0A9P0
BQB_IS_ENCODED_BY
GI:16128109; 944854; ABE-0000404; EG10543
fba__b0727 fba__G_b0727 sucB b0727
BQB_IS
P0AFG6
BQB_IS_ENCODED_BY
GI:16128702; 945307; ABE-0002480; EG10980
fba__b0726 fba__G_b0726 sucA b0726
BQB_IS
P0AFG3
BQB_IS_ENCODED_BY
GI:16128701; 945303; ABE-0002478; EG10979
fba__b2587 fba__G_b2587 kgtP b2587
BQB_IS
P0AEX3
BQB_IS_ENCODED_BY
GI:16130512; 947069; ABE-0008515; EG10522
fba__b0356 fba__G_b0356 frmA b0356
BQB_IS
P25437
BQB_IS_ENCODED_BY
GI:16128341; 944988; ABE-0001221; EG50010
fba__b1478 fba__G_b1478 adhP b1478
BQB_IS
P39451
BQB_IS_ENCODED_BY
GI:90111280; 946036; ABE-0004928; EG12622
fba__b3733 fba__G_b3733 atpG b3733
BQB_IS
P0ABA6
BQB_IS_ENCODED_BY
GI:16131601; 948243; ABE-0012211; EG10104
fba__b3739 fba__G_b3739 atpI b3739
BQB_IS
P0ABC0
BQB_IS_ENCODED_BY
GI:90111645; 948251; ABE-0012224; EG10106
fba__b3735 fba__G_b3735 atpH b3735
BQB_IS
P0ABA4
BQB_IS_ENCODED_BY
GI:16131603; 948254; ABE-0012215; EG10105
fba__b3734 fba__G_b3734 atpA b3734
BQB_IS
P0ABB0
BQB_IS_ENCODED_BY
GI:16131602; 948242; ABE-0012213; EG10098
fba__b3738 fba__G_b3738 atpB b3738
BQB_IS
P0AB98
BQB_IS_ENCODED_BY
GI:16131606; 948252; ABE-0012222; EG10099
fba__b3736 fba__G_b3736 atpF b3736
BQB_IS
P0ABA0
BQB_IS_ENCODED_BY
GI:16131604; 948247; ABE-0012217; EG10103
fba__b3732 fba__G_b3732 atpD b3732
BQB_IS
P0ABB4
BQB_IS_ENCODED_BY
GI:16131600; 948244; ABE-0012208; EG10101
fba__b3737 fba__G_b3737 atpE b3737
BQB_IS
P68699
BQB_IS_ENCODED_BY
GI:16131605; 948253; ABE-0012220; EG10102
fba__b3731 fba__G_b3731 atpC b3731
BQB_IS
P0A6E6
BQB_IS_ENCODED_BY
GI:16131599; 948245; ABE-0012206; EG10100
fba__b0720 fba__G_b0720 gltA b0720
BQB_IS
P0ABH7
BQB_IS_ENCODED_BY
GI:16128695; 945323; ABE-0002451; EG10402
fba__b0734 fba__G_b0734 cydB b0734
BQB_IS
P0ABK2
BQB_IS_ENCODED_BY
GI:16128709; 945347; ABE-0002501; EG10174
fba__b0978 fba__G_b0978 cbdA b0978
BQB_IS
P26459
BQB_IS_ENCODED_BY
GI:16128944; 945585; ABE-0003300; EG11380
fba__b0733 fba__G_b0733 cydA b0733
BQB_IS
P0ABJ9
BQB_IS_ENCODED_BY
GI:90111166; 945341; ABE-0002499; EG10173
fba__b0979 fba__G_b0979 cbdB b0979
BQB_IS
P26458
BQB_IS_ENCODED_BY
GI:16128945; 947547; ABE-0003302; EG11379
fba__b2975 fba__G_b2975 glcA b2975
BQB_IS
Q46839
BQB_IS_ENCODED_BY
GI:16130875; 947259; ABE-0009763; EG12995
fba__b3603 fba__G_b3603 lldP b3603
BQB_IS
P33231
BQB_IS_ENCODED_BY
GI:16131474; 948114; ABE-0011777; EG11961
fba__b2779 fba__G_b2779 eno b2779
BQB_IS
P0A6P9
BQB_IS_ENCODED_BY
GI:16130686; 945032; ABE-0009110; EG10258
fba__b2097 fba__G_b2097 fbaB b2097
BQB_IS
P0A991
BQB_IS_ENCODED_BY
GI:90111385; 946632; ABE-0006941; EG14062
fba__b2925 fba__G_b2925 fbaA b2925
BQB_IS
P0AB71
BQB_IS_ENCODED_BY
GI:16130826; 947415; ABE-0009600; EG10282
fba__b1773 fba__G_b1773 ydjI b1773
BQB_IS
P77704
BQB_IS_ENCODED_BY
GI:16129727; 946291; ABE-0005906; EG13485
fba__b3925 fba__G_b3925 glpX b3925
BQB_IS
P0A9C9
BQB_IS_ENCODED_BY
GI:16131763; 948424; ABE-0012821; EG11517
fba__b4232 fba__G_b4232 fbp b4232
BQB_IS
P0A993
BQB_IS_ENCODED_BY
GI:16132054; 948753; ABE-0013842; EG10283
fba__b2492 fba__G_b2492 focB b2492
BQB_IS
P77733
BQB_IS_ENCODED_BY
GI:16130417; 949032; ABE-0008206; EG14220
fba__b0904 fba__G_b0904 focA b0904
BQB_IS
P0AC23
BQB_IS_ENCODED_BY
GI:16128871; 945513; ABE-0003073; EG11258
fba__b4151 fba__G_b4151 frdD b4151
BQB_IS
P0A8Q3
BQB_IS_ENCODED_BY
GI:16131976; 948668; ABE-0013595; EG10333
fba__b4152 fba__G_b4152 frdC b4152
BQB_IS
P0A8Q0
BQB_IS_ENCODED_BY
GI:16131977; 948680; ABE-0013598; EG10332
fba__b4154 fba__G_b4154 frdA b4154
BQB_IS
P00363
BQB_IS_ENCODED_BY
GI:16131979; 948667; ABE-0013604; EG10330
fba__b4153 fba__G_b4153 frdB b4153
BQB_IS
P0AC47
BQB_IS_ENCODED_BY
GI:16131978; 948666; ABE-0013602; EG10331
fba__b2416 fba__G_b2416 ptsI b2416
BQB_IS
P08839
BQB_IS_ENCODED_BY
GI:16130342; 946879; ABE-0007967; EG10789
fba__b1818 fba__G_b1818 manY b1818
BQB_IS
P69801
BQB_IS_ENCODED_BY
GI:16129772; 946332; ABE-0006056; EG10568
fba__b1817 fba__G_b1817 manX b1817
BQB_IS
P69797
BQB_IS_ENCODED_BY
GI:16129771; 946334; ABE-0006054; EG10567
fba__b1819 fba__G_b1819 manZ b1819
BQB_IS
P69805
BQB_IS_ENCODED_BY
GI:345452720; 946342; ABE-0006058; EG10569
fba__b2415 fba__G_b2415 ptsH b2415
BQB_IS
P0AA04
BQB_IS_ENCODED_BY
GI:16130341; 946886; ABE-0007962; EG10788
fba__b1611 fba__G_b1611 fumC b1611
BQB_IS
P05042
BQB_IS_ENCODED_BY
GI:16129569; 946147; ABE-0005380; EG10358
fba__b4122 fba__G_b4122 fumB b4122
BQB_IS
P14407
BQB_IS_ENCODED_BY
GI:16131948; 948642; ABE-0013501; EG10357
fba__b1612 fba__G_b1612 fumA b1612
BQB_IS
P0AC33
BQB_IS_ENCODED_BY
GI:16129570; 946826; ABE-0005392; EG10356
fba__b3528 fba__G_b3528 dctA b3528
BQB_IS
P0A830
BQB_IS_ENCODED_BY
GI:16131400; 948039; ABE-0011527; EG20044
fba__b1852 fba__G_b1852 zwf b1852
BQB_IS
P0AC53
BQB_IS_ENCODED_BY
GI:16129805; 946370; ABE-0006171; EG11221
fba__b1779 fba__G_b1779 gapA b1779
BQB_IS
P0A9B2
BQB_IS_ENCODED_BY
GI:16129733; 947679; ABE-0005920; EG10367
fba__b1621 fba__G_b1621 malX b1621
BQB_IS
P19642
BQB_IS_ENCODED_BY
GI:16129579; 946009; ABE-0005429; EG10563
fba__b2417 fba__G_b2417 crr b2417
BQB_IS
P69783
BQB_IS_ENCODED_BY
GI:16130343; 946880; ABE-0007971; EG10165
fba__b1101 fba__G_b1101 ptsG b1101
BQB_IS
P69786
BQB_IS_ENCODED_BY
GI:16129064; 945651; ABE-0003722; EG10787
fba__b1297 fba__G_b1297 puuA b1297
BQB_IS
P78061
BQB_IS_ENCODED_BY
GI:90111244; 946202; ABE-0004365; EG13908
fba__b3870 fba__G_b3870 glnA b3870
BQB_IS
P0A9C5
BQB_IS_ENCODED_BY
GI:16131710; 948370; ABE-0012640; EG10383
fba__b0810 fba__G_b0810 glnP b0810
BQB_IS
P0AEQ6
BQB_IS_ENCODED_BY
GI:16128778; 945621; ABE-0002766; EG10388
fba__b0811 fba__G_b0811 glnH b0811
BQB_IS
P0AEQ3
BQB_IS_ENCODED_BY
GI:16128779; 944872; ABE-0002771; EG10386
fba__b0809 fba__G_b0809 glnQ b0809
BQB_IS
P10346
BQB_IS_ENCODED_BY
GI:16128777; 945435; ABE-0002764; EG10389
fba__b1761 fba__G_b1761 gdhA b1761
BQB_IS
P00370
BQB_IS_ENCODED_BY
GI:16129715; 946802; ABE-0005865; EG10372
fba__b0485 fba__G_b0485 glsA b0485
BQB_IS
P77454
BQB_IS_ENCODED_BY
GI:16128469; 946187; ABE-0001688; EG13247
fba__b1812 fba__G_b1812 pabB b1812
BQB_IS
P05041
BQB_IS_ENCODED_BY
GI:16129766; 946337; ABE-0006031; EG10683
fba__b1524 fba__G_b1524 glsB b1524
BQB_IS
P0A6W0
BQB_IS_ENCODED_BY
GI:16129483; 944973; ABE-0005086; EG13816
fba__b3213 fba__G_b3213 gltD b3213
BQB_IS
P09832
BQB_IS_ENCODED_BY
GI:16131103; 947723; ABE-0010547; EG10404
fba__b3212 fba__G_b3212 gltB b3212
BQB_IS
P09831
BQB_IS_ENCODED_BY
GI:308209621; 947724; ABE-0010545; EG10403
fba__b4077 fba__G_b4077 gltP b4077
BQB_IS
P21345
BQB_IS_ENCODED_BY
GI:16131903; 948591; ABE-0013357; EG10405
fba__b2029 fba__G_b2029 gnd b2029
BQB_IS
P00350
BQB_IS_ENCODED_BY
GI:16129970; 946554; ABE-0006737; EG10411
fba__b0875 fba__G_b0875 aqpZ b0875
BQB_IS
P60844
BQB_IS_ENCODED_BY
GI:16128843; 945497; ABE-0002976; EG13270
fba__b1136 fba__G_b1136 icd b1136
BQB_IS
P08200
BQB_IS_ENCODED_BY
GI:16129099; 945702; ABE-0003823; EG10489
fba__b4015 fba__G_b4015 aceA b4015
BQB_IS
P0A9G6
BQB_IS_ENCODED_BY
GI:16131841; 948517; ABE-0013128; EG10022
fba__b2133 fba__G_b2133 dld b2133
BQB_IS
P06149
BQB_IS_ENCODED_BY
GI:16130071; 946653; ABE-0007048; EG10231
fba__b1380 fba__G_b1380 ldhA b1380
BQB_IS
P52643
BQB_IS_ENCODED_BY
GI:16129341; 946315; ABE-0004619; EG13186
fba__b4014 fba__G_b4014 aceB b4014
BQB_IS
P08997
BQB_IS_ENCODED_BY
GI:16131840; 948512; ABE-0013125; EG10023
fba__b2976 fba__G_b2976 glcB b2976
BQB_IS
P37330
BQB_IS_ENCODED_BY
GI:16130876; 948857; ABE-0009767; EG20080
fba__b3236 fba__G_b3236 mdh b3236
BQB_IS
P61889
BQB_IS_ENCODED_BY
GI:16131126; 947854; ABE-0010613; EG10576
fba__b1479 fba__G_b1479 maeA b1479
BQB_IS
P26616
BQB_IS_ENCODED_BY
GI:90111281; 946031; ABE-0004931; EG10948
fba__b2463 fba__G_b2463 maeB b2463
BQB_IS
P76558
BQB_IS_ENCODED_BY
GI:16130388; 946947; ABE-0008111; EG14193
fba__b2280 fba__G_b2280 nuoJ b2280
BQB_IS
P0AFE0
BQB_IS_ENCODED_BY
GI:16130215; 946756; ABE-0007536; EG12090
fba__b2278 fba__G_b2278 nuoL b2278
BQB_IS
P33607
BQB_IS_ENCODED_BY
GI:16130213; 945540; ABE-0007532; EG12092
fba__b2281 fba__G_b2281 nuoI b2281
BQB_IS
P0AFD6
BQB_IS_ENCODED_BY
GI:16130216; 946757; ABE-0007539; EG12089
fba__b2288 fba__G_b2288 nuoA b2288
BQB_IS
P0AFC3
BQB_IS_ENCODED_BY
GI:49176207; 946764; ABE-0007553; EG12082
fba__b2282 fba__G_b2282 nuoH b2282
BQB_IS
P0AFD4
BQB_IS_ENCODED_BY
GI:16130217; 946761; ABE-0007541; EG12088
fba__b2286 fba__G_b2286 nuoC b2286
BQB_IS
P33599
BQB_IS_ENCODED_BY
GI:145698291; 946759; ABE-0007549; EG12084
fba__b2283 fba__G_b2283 nuoG b2283
BQB_IS
P33602
BQB_IS_ENCODED_BY
GI:145698290; 946762; ABE-0007543; EG12087
fba__b2277 fba__G_b2277 nuoM b2277
BQB_IS
P0AFE8
BQB_IS_ENCODED_BY
GI:16130212; 947731; ABE-0007529; EG11773
fba__b2287 fba__G_b2287 nuoB b2287
BQB_IS
P0AFC7
BQB_IS_ENCODED_BY
GI:16130222; 946738; ABE-0007551; EG12083
fba__b2284 fba__G_b2284 nuoF b2284
BQB_IS
P31979
BQB_IS_ENCODED_BY
GI:16130219; 946753; ABE-0007545; EG11774
fba__b2279 fba__G_b2279 nuoK b2279
BQB_IS
P0AFE4
BQB_IS_ENCODED_BY
GI:16130214; 947580; ABE-0007534; EG12091
fba__b2276 fba__G_b2276 nuoN b2276
BQB_IS
P0AFF0
BQB_IS_ENCODED_BY
GI:145698289; 945136; ABE-0007526; EG12093
fba__b2285 fba__G_b2285 nuoE b2285
BQB_IS
P0AFD1
BQB_IS_ENCODED_BY
GI:16130220; 946746; ABE-0007547; EG12086
fba__b3962 fba__G_b3962 sthA b3962
BQB_IS
P27306
BQB_IS_ENCODED_BY
GI:90111670; 948461; ABE-0012975; EG11428
fba__b1602 fba__G_b1602 pntB b1602
BQB_IS
P0AB67
BQB_IS_ENCODED_BY
GI:16129560; 946144; ABE-0005352; EG10745
fba__b1603 fba__G_b1603 pntA b1603
BQB_IS
P07001
BQB_IS_ENCODED_BY
GI:16129561; 946628; ABE-0005354; EG10744
fba__b0451 fba__G_b0451 amtB b0451
BQB_IS
P69681
BQB_IS_ENCODED_BY
GI:16128436; 945084; ABE-0001564; EG11821
fba__b0115 fba__G_b0115 aceF b0115
BQB_IS
P06959
BQB_IS_ENCODED_BY
GI:16128108; 944794; ABE-0000400; EG10025
fba__b0114 fba__G_b0114 aceE b0114
BQB_IS
P0AFG8
BQB_IS_ENCODED_BY
GI:16128107; 944834; ABE-0000397; EG10024
fba__b3916 fba__G_b3916 pfkA b3916
BQB_IS
P0A796
BQB_IS_ENCODED_BY
GI:16131754; 948412; ABE-0012789; EG10699
fba__b1723 fba__G_b1723 pfkB b1723
BQB_IS
P06999
BQB_IS_ENCODED_BY
GI:49176138; 946230; ABE-0005748; EG10700
fba__b0903 fba__G_b0903 pflB b0903
BQB_IS
P09373
BQB_IS_ENCODED_BY
GI:16128870; 945514; ABE-0003071; EG10701
fba__b3952 fba__G_b3952 pflC b3952
BQB_IS
P32675
BQB_IS_ENCODED_BY
GI:49176447; 948453; ABE-0012937; EG11911
fba__b3114 fba__G_b3114 tdcE b3114
BQB_IS
P42632
BQB_IS_ENCODED_BY
GI:49176316; 947623; ABE-0010242; EG12758
fba__b0902 fba__G_b0902 pflA b0902
BQB_IS
P0A9N4
BQB_IS_ENCODED_BY
GI:16128869; 945517; ABE-0003068; EG10028
fba__b2579 fba__G_b2579 grcA b2579
BQB_IS
P68066
BQB_IS_ENCODED_BY
GI:16130504; 947068; ABE-0008489; EG11784
fba__b3951 fba__G_b3951 pflD b3951
BQB_IS
P32674
BQB_IS_ENCODED_BY
GI:16131789; 948454; ABE-0012934; EG11910
fba__b4025 fba__G_b4025 pgi b4025
BQB_IS
P0A6T1
BQB_IS_ENCODED_BY
GI:16131851; 948535; ABE-0013163; EG10702
fba__b2926 fba__G_b2926 pgk b2926
BQB_IS
P0A799
BQB_IS_ENCODED_BY
GI:16130827; 947414; ABE-0009605; EG10703
fba__b0767 fba__G_b0767 pgl b0767
BQB_IS
P52697
BQB_IS_ENCODED_BY
GI:16128735; 946398; ABE-0002611; EG13231
fba__b0755 fba__G_b0755 gpmA b0755
BQB_IS
P62707
BQB_IS_ENCODED_BY
GI:16128723; 945068; ABE-0002563; EG11699
fba__b3612 fba__G_b3612 gpmM b3612
BQB_IS
P37689
BQB_IS_ENCODED_BY
GI:16131483; 948130; ABE-0011818; EG12296
fba__b4395 fba__G_b4395 ytjC b4395
BQB_IS
P0A7A2
BQB_IS_ENCODED_BY
GI:16132212; 948918; ABE-0014416; EG12164
fba__b2987 fba__G_b2987 pitB b2987
BQB_IS
P43676
BQB_IS_ENCODED_BY
GI:16130887; 947475; ABE-0009800; EG12883
fba__b3493 fba__G_b3493 pitA b3493
BQB_IS
P0AFJ7
BQB_IS_ENCODED_BY
GI:16131365; 948009; ABE-0011407; EG12230
fba__b3956 fba__G_b3956 ppc b3956
BQB_IS
P00864
BQB_IS_ENCODED_BY
GI:16131794; 948457; ABE-0012950; EG10756
fba__b3403 fba__G_b3403 pck b3403
BQB_IS
P22259
BQB_IS_ENCODED_BY
GI:16131280; 945667; ABE-0011106; EG10688
fba__b1702 fba__G_b1702 ppsA b1702
BQB_IS
P23538
BQB_IS_ENCODED_BY
GI:16129658; 946209; ABE-0005678; EG10759
fba__b2297 fba__G_b2297 pta b2297
BQB_IS
P0A9M8
BQB_IS_ENCODED_BY
GI:16130232; 946778; ABE-0007582; EG20173
fba__b2458 fba__G_b2458 eutD b2458
BQB_IS
P77218
BQB_IS_ENCODED_BY
GI:16130383; 946940; ABE-0008097; EG14188
fba__b1676 fba__G_b1676 pykF b1676
BQB_IS
P0AD61
BQB_IS_ENCODED_BY
GI:16129632; 946179; ABE-0005600; EG10804
fba__b1854 fba__G_b1854 pykA b1854
BQB_IS
P21599
BQB_IS_ENCODED_BY
GI:16129807; 946527; ABE-0006182; EG10803
fba__b4301 fba__G_b4301 sgcE b4301
BQB_IS
P39362
BQB_IS_ENCODED_BY
GI:16132122; 948829; ABE-0014097; EG12553
fba__b3386 fba__G_b3386 rpe b3386
BQB_IS
P0AG07
BQB_IS_ENCODED_BY
GI:16131264; 947896; ABE-0011061; EG11960
fba__b2914 fba__G_b2914 rpiA b2914
BQB_IS
P0A7Z0
BQB_IS_ENCODED_BY
GI:16130815; 947407; ABE-0009567; EG11443
fba__b4090 fba__G_b4090 rpiB b4090
BQB_IS
P37351
BQB_IS_ENCODED_BY
GI:16131916; 948602; ABE-0013405; EG11827
fba__b0723 fba__G_b0723 sdhA b0723
BQB_IS
P0AC41
BQB_IS_ENCODED_BY
GI:16128698; 945402; ABE-0002466; EG10931
fba__b0724 fba__G_b0724 sdhB b0724
BQB_IS
P07014
BQB_IS_ENCODED_BY
GI:16128699; 945300; ABE-0002468; EG10932
fba__b0722 fba__G_b0722 sdhD b0722
BQB_IS
P0AC44
BQB_IS_ENCODED_BY
GI:16128697; 945322; ABE-0002464; EG10934
fba__b0721 fba__G_b0721 sdhC b0721
BQB_IS
P69054
BQB_IS_ENCODED_BY
GI:16128696; 945316; ABE-0002460; EG10933
fba__b0728 fba__G_b0728 sucC b0728
BQB_IS
P0A836
BQB_IS_ENCODED_BY
GI:16128703; 945312; ABE-0002483; EG10981
fba__b0729 fba__G_b0729 sucD b0729
BQB_IS
P0AGE9
BQB_IS_ENCODED_BY
GI:16128704; 945314; ABE-0002485; EG10982
fba__b2464 fba__G_b2464 talA b2464
BQB_IS
P0A867
BQB_IS_ENCODED_BY
GI:16130389; 947006; ABE-0008115; EG11797
fba__b0008 fba__G_b0008 talB b0008
BQB_IS
P0A870
BQB_IS_ENCODED_BY
GI:16128002; 944748; ABE-0000027; EG11556
fba__b2465 fba__G_b2465 tktB b2465
BQB_IS
P33570
BQB_IS_ENCODED_BY
GI:16130390; 945865; ABE-0008117; EG12100
fba__b2935 fba__G_b2935 tktA b2935
BQB_IS
P27302
BQB_IS_ENCODED_BY
GI:49176286; 947420; ABE-0009625; EG11427
fba__b3919 fba__G_b3919 tpiA b3919
BQB_IS
P0A858
BQB_IS_ENCODED_BY
GI:16131757; 948409; ABE-0012799; EG11015

Parameters [90] name constant value unit derived unit sbo cvterm
dt 0.1 h 3600 s
lb_EX_mal__L_e 0.0 mmol_per_h 10 3 mole 3600 s
ub_EX_mal__L_e 1000.0 mmol_per_h 10 3 mole 3600 s
lb_EX_acald_e 0.0 mmol_per_h 10 3 mole 3600 s
ub_EX_acald_e 1000.0 mmol_per_h 10 3 mole 3600 s
lb_EX_pyr_e 0.0 mmol_per_h 10 3 mole 3600 s
ub_EX_pyr_e 1000.0 mmol_per_h 10 3 mole 3600 s
lb_EX_glc__D_e -10.0 mmol_per_h 10 3 mole 3600 s
ub_EX_glc__D_e 1000.0 mmol_per_h 10 3 mole 3600 s
lb_EX_etoh_e 0.0 mmol_per_h 10 3 mole 3600 s
ub_EX_etoh_e 1000.0 mmol_per_h 10 3 mole 3600 s
lb_EX_nh4_e -1000.0 mmol_per_h 10 3 mole 3600 s
ub_EX_nh4_e 1000.0 mmol_per_h 10 3 mole 3600 s
lb_EX_h2o_e -1000.0 mmol_per_h 10 3 mole 3600 s
ub_EX_h2o_e 1000.0 mmol_per_h 10 3 mole 3600 s
lb_EX_ac_e 0.0 mmol_per_h 10 3 mole 3600 s
ub_EX_ac_e 1000.0 mmol_per_h 10 3 mole 3600 s
lb_EX_akg_e 0.0 mmol_per_h 10 3 mole 3600 s
ub_EX_akg_e 1000.0 mmol_per_h 10 3 mole 3600 s
lb_EX_co2_e -1000.0 mmol_per_h 10 3 mole 3600 s
ub_EX_co2_e 1000.0 mmol_per_h 10 3 mole 3600 s
lb_EX_lac__D_e 0.0 mmol_per_h 10 3 mole 3600 s
ub_EX_lac__D_e 1000.0 mmol_per_h 10 3 mole 3600 s
lb_EX_fum_e 0.0 mmol_per_h 10 3 mole 3600 s
ub_EX_fum_e 1000.0 mmol_per_h 10 3 mole 3600 s
lb_EX_fru_e 0.0 mmol_per_h 10 3 mole 3600 s
ub_EX_fru_e 1000.0 mmol_per_h 10 3 mole 3600 s
lb_EX_for_e 0.0 mmol_per_h 10 3 mole 3600 s
ub_EX_for_e 1000.0 mmol_per_h 10 3 mole 3600 s
lb_EX_gln__L_e 0.0 mmol_per_h 10 3 mole 3600 s
ub_EX_gln__L_e 1000.0 mmol_per_h 10 3 mole 3600 s
lb_EX_succ_e 0.0 mmol_per_h 10 3 mole 3600 s
ub_EX_succ_e 1000.0 mmol_per_h 10 3 mole 3600 s
lb_EX_h_e -1000.0 mmol_per_h 10 3 mole 3600 s
ub_EX_h_e 1000.0 mmol_per_h 10 3 mole 3600 s
lb_EX_pi_e -1000.0 mmol_per_h 10 3 mole 3600 s
ub_EX_pi_e 1000.0 mmol_per_h 10 3 mole 3600 s
lb_EX_X 0.0 mmol_per_h 10 3 mole 3600 s
ub_EX_X 1000.0 mmol_per_h 10 3 mole 3600 s
lb_EX_glu__L_e 0.0 mmol_per_h 10 3 mole 3600 s
ub_EX_glu__L_e 1000.0 mmol_per_h 10 3 mole 3600 s
lb_EX_o2_e -1000.0 mmol_per_h 10 3 mole 3600 s
ub_EX_o2_e 1000.0 mmol_per_h 10 3 mole 3600 s
pEX_mal__L_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_acald_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_pyr_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_glc__D_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_etoh_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_nh4_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_h2o_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_ac_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_akg_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_co2_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_lac__D_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_fum_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_fru_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_for_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_gln__L_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_succ_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_h_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_pi_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_X 1.0 mmol_per_h 10 3 mole 3600 s
pEX_glu__L_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_o2_e 1.0 mmol_per_h 10 3 mole 3600 s
fba__cobra_default_lb cobra default - lb -1000.0 fba__mmol_per_gDW_per_hr 10 3 mole g 3600 s
fba__cobra_default_ub cobra default - ub 1000.0 fba__mmol_per_gDW_per_hr 10 3 mole g 3600 s
fba__cobra_0_bound cobra 0 - bound 0.0 fba__mmol_per_gDW_per_hr 10 3 mole g 3600 s
fba__R_ATPM_lower_bound R ATPM lower - bound 0.0 fba__mmol_per_gDW_per_hr 10 3 mole g 3600 s
fba__R_EX_glc__D_e_lower_bound R EX glc-D e lower - bound -10.0 fba__mmol_per_gDW_per_hr 10 3 mole g 3600 s
bounds__fbalb_EX_mal__L_e 0.0 mmol_per_h 10 3 mole 3600 s
bounds__fbalb_EX_acald_e 0.0 mmol_per_h 10 3 mole 3600 s
bounds__fbalb_EX_pyr_e 0.0 mmol_per_h 10 3 mole 3600 s
bounds__fbalb_EX_glc__D_e -10.0 mmol_per_h 10 3 mole 3600 s
bounds__fbalb_EX_etoh_e 0.0 mmol_per_h 10 3 mole 3600 s
bounds__fbalb_EX_nh4_e -1000.0 mmol_per_h 10 3 mole 3600 s
bounds__fbalb_EX_h2o_e -1000.0 mmol_per_h 10 3 mole 3600 s
bounds__fbalb_EX_ac_e 0.0 mmol_per_h 10 3 mole 3600 s
bounds__fbalb_EX_akg_e 0.0 mmol_per_h 10 3 mole 3600 s
bounds__fbalb_EX_co2_e -1000.0 mmol_per_h 10 3 mole 3600 s
bounds__fbalb_EX_lac__D_e 0.0 mmol_per_h 10 3 mole 3600 s
bounds__fbalb_EX_fum_e 0.0 mmol_per_h 10 3 mole 3600 s
bounds__fbalb_EX_fru_e 0.0 mmol_per_h 10 3 mole 3600 s
bounds__fbalb_EX_for_e 0.0 mmol_per_h 10 3 mole 3600 s
bounds__fbalb_EX_gln__L_e 0.0 mmol_per_h 10 3 mole 3600 s
bounds__fbalb_EX_succ_e 0.0 mmol_per_h 10 3 mole 3600 s
bounds__fbalb_EX_h_e -1000.0 mmol_per_h 10 3 mole 3600 s
bounds__fbalb_EX_pi_e -1000.0 mmol_per_h 10 3 mole 3600 s
bounds__fbalb_EX_X 0.0 mmol_per_h 10 3 mole 3600 s
bounds__fbalb_EX_glu__L_e 0.0 mmol_per_h 10 3 mole 3600 s
bounds__fbalb_EX_o2_e -1000.0 mmol_per_h 10 3 mole 3600 s

Rules [42]   assignment name derived units sbo cvterm
pEX_mal__L_e = EX_mal__L_e 10 3 mole 3600 s
pEX_acald_e = EX_acald_e 10 3 mole 3600 s
pEX_pyr_e = EX_pyr_e 10 3 mole 3600 s
pEX_glc__D_e = EX_glc__D_e 10 3 mole 3600 s
pEX_etoh_e = EX_etoh_e 10 3 mole 3600 s
pEX_nh4_e = EX_nh4_e 10 3 mole 3600 s
pEX_h2o_e = EX_h2o_e 10 3 mole 3600 s
pEX_ac_e = EX_ac_e 10 3 mole 3600 s
pEX_akg_e = EX_akg_e 10 3 mole 3600 s
pEX_co2_e = EX_co2_e 10 3 mole 3600 s
pEX_lac__D_e = EX_lac__D_e 10 3 mole 3600 s
pEX_fum_e = EX_fum_e 10 3 mole 3600 s
pEX_fru_e = EX_fru_e 10 3 mole 3600 s
pEX_for_e = EX_for_e 10 3 mole 3600 s
pEX_gln__L_e = EX_gln__L_e 10 3 mole 3600 s
pEX_succ_e = EX_succ_e 10 3 mole 3600 s
pEX_h_e = EX_h_e 10 3 mole 3600 s
pEX_pi_e = EX_pi_e 10 3 mole 3600 s
pEX_X = EX_X 10 3 mole 3600 s
pEX_glu__L_e = EX_glu__L_e 10 3 mole 3600 s
pEX_o2_e = EX_o2_e 10 3 mole 3600 s
lb_EX_mal__L_e = bounds__max bounds__fbalb_EX_mal__L_e mal__L_e bioreactor dt 10 3 mole 3600 s
lb_EX_acald_e = bounds__max bounds__fbalb_EX_acald_e acald_e bioreactor dt 10 3 mole 3600 s
lb_EX_pyr_e = bounds__max bounds__fbalb_EX_pyr_e pyr_e bioreactor dt 10 3 mole 3600 s
lb_EX_glc__D_e = bounds__max bounds__fbalb_EX_glc__D_e glc__D_e bioreactor dt 10 3 mole 3600 s
lb_EX_etoh_e = bounds__max bounds__fbalb_EX_etoh_e etoh_e bioreactor dt 10 3 mole 3600 s
lb_EX_nh4_e = bounds__max bounds__fbalb_EX_nh4_e nh4_e bioreactor dt 10 3 mole 3600 s
lb_EX_h2o_e = bounds__max bounds__fbalb_EX_h2o_e h2o_e bioreactor dt 10 3 mole 3600 s
lb_EX_ac_e = bounds__max bounds__fbalb_EX_ac_e ac_e bioreactor dt 10 3 mole 3600 s
lb_EX_akg_e = bounds__max bounds__fbalb_EX_akg_e akg_e bioreactor dt 10 3 mole 3600 s
lb_EX_co2_e = bounds__max bounds__fbalb_EX_co2_e co2_e bioreactor dt 10 3 mole 3600 s
lb_EX_lac__D_e = bounds__max bounds__fbalb_EX_lac__D_e lac__D_e bioreactor dt 10 3 mole 3600 s
lb_EX_fum_e = bounds__max bounds__fbalb_EX_fum_e fum_e bioreactor dt 10 3 mole 3600 s
lb_EX_fru_e = bounds__max bounds__fbalb_EX_fru_e fru_e bioreactor dt 10 3 mole 3600 s
lb_EX_for_e = bounds__max bounds__fbalb_EX_for_e for_e bioreactor dt 10 3 mole 3600 s
lb_EX_gln__L_e = bounds__max bounds__fbalb_EX_gln__L_e gln__L_e bioreactor dt 10 3 mole 3600 s
lb_EX_succ_e = bounds__max bounds__fbalb_EX_succ_e succ_e bioreactor dt 10 3 mole 3600 s
lb_EX_h_e = bounds__max bounds__fbalb_EX_h_e h_e bioreactor dt 10 3 mole 3600 s
lb_EX_pi_e = bounds__max bounds__fbalb_EX_pi_e pi_e bioreactor dt 10 3 mole 3600 s
lb_EX_X = bounds__max bounds__fbalb_EX_X X bioreactor dt 10 3 mole 3600 s
lb_EX_glu__L_e = bounds__max bounds__fbalb_EX_glu__L_e glu__L_e bioreactor dt 10 3 mole 3600 s
lb_EX_o2_e = bounds__max bounds__fbalb_EX_o2_e o2_e bioreactor dt 10 3 mole 3600 s

Reactions [117] id name equation modifiers kinetic law derived units sbo cvterm
fba__ACALD fba__R_ACALD Acetaldehyde dehydrogenase (acetylating)
[-1000.0 1000.0]
(b0351 or b1241)
fba__acald_c + fba__coa_c + fba__nad_c ⇆ fba__accoa_c + fba__h_c + fba__nadh_c
BQB_IS
ACALD
fba__ACALDt fba__R_ACALDt Acetaldehyde reversible transport
[-1000.0 1000.0]
s0001
fba__acald_e ⇆ fba__acald_c
BQB_IS
ACALDt
fba__ACKr fba__R_ACKr Acetate kinase
[-1000.0 1000.0]
(b2296 or b3115 or b1849)
fba__ac_c + fba__atp_c ⇆ fba__actp_c + fba__adp_c
BQB_IS
ACKr
fba__ACONTa fba__R_ACONTa Aconitase (half-reaction A, Citrate hydro-lyase)
[-1000.0 1000.0]
(b0118 or b1276)
fba__cit_c ⇆ fba__acon_C_c + fba__h2o_c
BQB_IS
ACONTa
fba__ACONTb fba__R_ACONTb Aconitase (half-reaction B, Isocitrate hydro-lyase)
[-1000.0 1000.0]
(b0118 or b1276)
fba__acon_C_c + fba__h2o_c ⇆ fba__icit_c
BQB_IS
ACONTb
fba__ACt2r fba__R_ACt2r Acetate reversible transport via proton symport
[-1000.0 1000.0]
fba__ac_e + fba__h_e ⇆ fba__ac_c + fba__h_c
BQB_IS
ACt2r
fba__ADK1 fba__R_ADK1 Adenylate kinase
[-1000.0 1000.0]
b0474
fba__amp_c + fba__atp_c ⇆ 2.0 fba__adp_c
BQB_IS
ADK1
fba__AKGDH fba__R_AKGDH 2-Oxogluterate dehydrogenase
[0.0 1000.0]
(b0726 and b0116 and b0727)
fba__akg_c + fba__coa_c + fba__nad_c ➞ fba__co2_c + fba__nadh_c + fba__succoa_c
BQB_IS
AKGDH
fba__AKGt2r fba__R_AKGt2r 2 oxoglutarate reversible transport via symport
[-1000.0 1000.0]
b2587
fba__akg_e + fba__h_e ⇆ fba__akg_c + fba__h_c
BQB_IS
AKGt2r
fba__ALCD2x fba__R_ALCD2x Alcohol dehydrogenase (ethanol)
[-1000.0 1000.0]
(b1478 or b0356 or b1241)
fba__etoh_c + fba__nad_c ⇆ fba__acald_c + fba__h_c + fba__nadh_c
BQB_IS
ALCD2x
fba__ATPM fba__R_ATPM ATP maintenance requirement
[0.0 1000.0]
fba__atp_c + fba__h2o_c ➞ fba__adp_c + fba__h_c + fba__pi_c
BQB_IS
ATPM
fba__ATPS4r fba__R_ATPS4r ATP synthase (four protons for one ATP)
[-1000.0 1000.0]
((b3738 and b3736 and b3737 and b3735 and b3733 and b3731 and b3732 and b3734) or (b3734 and b3732 and b3731 and b3733 and b3735 and b3737 and b3736 and b3738 and b3739))
fba__adp_c + 4.0 fba__h_e + fba__pi_c ⇆ fba__atp_c + fba__h2o_c + 3.0 fba__h_c
BQB_IS
ATPS4r
fba__BIOMASS_Ecoli_core_w_GAM fba__R_BIOMASS_Ecoli_core_w_GAM Biomass Objective Function with GAM
[0.0 1000.0]
1.496 fba__M_3pg_c + 3.7478 fba__accoa_c + 59.81 fba__atp_c + 0.361 fba__e4p_c + 0.0709 fba__f6p_c + 0.129 fba__g3p_c + 0.205 fba__g6p_c + 0.2557 fba__gln__L_c + 4.9414 fba__glu__L_c + 59.81 fba__h2o_c + 3.547 fba__nad_c + 13.0279 fba__nadph_c + 1.7867 fba__oaa_c + 0.5191 fba__pep_c + 2.8328 fba__pyr_c + 0.8977 fba__r5p_c ➞ 59.81 fba__adp_c + 4.1182 fba__akg_c + 3.7478 fba__coa_c + 59.81 fba__h_c + 3.547 fba__nadh_c + 13.0279 fba__nadp_c + 59.81 fba__pi_c + fba__X
fba__CO2t fba__R_CO2t CO2 transporter via diffusion
[-1000.0 1000.0]
s0001
fba__co2_e ⇆ fba__co2_c
BQB_IS
CO2t
fba__CS fba__R_CS Citrate synthase
[0.0 1000.0]
b0720
fba__accoa_c + fba__h2o_c + fba__oaa_c ➞ fba__cit_c + fba__coa_c + fba__h_c
BQB_IS
CS
fba__CYTBD fba__R_CYTBD Cytochrome oxidase bd (ubiquinol-8: 2 protons)
[0.0 1000.0]
((b0978 and b0979) or (b0733 and b0734))
2.0 fba__h_c + 0.5 fba__o2_c + fba__q8h2_c ➞ fba__h2o_c + 2.0 fba__h_e + fba__q8_c
BQB_IS
CYTBD
fba__D_LACt2 fba__R_D_LACt2 D lactate transport via proton symport
[-1000.0 1000.0]
(b2975 or b3603)
fba__h_e + fba__lac__D_e ⇆ fba__h_c + fba__lac__D_c
BQB_IS
D_LACt2
fba__ENO fba__R_ENO Enolase
[-1000.0 1000.0]
b2779
fba__M_2pg_c ⇆ fba__h2o_c + fba__pep_c
BQB_IS
ENO
fba__ETOHt2r fba__R_ETOHt2r ETOHt2r
[-1000.0 1000.0]
fba__etoh_e + fba__h_e ⇆ fba__etoh_c + fba__h_c
BQB_IS
ETOHt2r
EX_ac_e fba__R_EX_ac_e Acetate exchange
[0.0 1000.0]
fba__ac_e ⇆
BQB_IS
ac
EX_acald_e fba__R_EX_acald_e Acetaldehyde exchange
[0.0 1000.0]
fba__acald_e ⇆
BQB_IS
acald
EX_akg_e fba__R_EX_akg_e 2-Oxoglutarate exchange
[0.0 1000.0]
fba__akg_e ⇆
BQB_IS
akg
EX_co2_e fba__R_EX_co2_e CO2 exchange
[-1000.0 1000.0]
fba__co2_e ⇆
BQB_IS
co2
EX_etoh_e fba__R_EX_etoh_e Ethanol exchange
[0.0 1000.0]
fba__etoh_e ⇆
BQB_IS
etoh
EX_for_e fba__R_EX_for_e Formate exchange
[0.0 1000.0]
fba__for_e ⇆
BQB_IS
for
EX_fru_e fba__R_EX_fru_e D-Fructose exchange
[0.0 1000.0]
fba__fru_e ⇆
BQB_IS
fru
EX_fum_e fba__R_EX_fum_e Fumarate exchange
[0.0 1000.0]
fba__fum_e ⇆
BQB_IS
fum
EX_glc__D_e fba__R_EX_glc__D_e D-Glucose exchange
[-10.0 1000.0]
fba__glc__D_e ⇆
BQB_IS
glc__D
EX_gln__L_e fba__R_EX_gln__L_e L-Glutamine exchange
[0.0 1000.0]
fba__gln__L_e ⇆
BQB_IS
gln__L
EX_glu__L_e fba__R_EX_glu__L_e L-Glutamate exchange
[0.0 1000.0]
fba__glu__L_e ⇆
BQB_IS
glu__L
EX_h_e fba__R_EX_h_e H+ exchange
[-1000.0 1000.0]
fba__h_e ⇆
BQB_IS
h
EX_h2o_e fba__R_EX_h2o_e H2O exchange
[-1000.0 1000.0]
fba__h2o_e ⇆
BQB_IS
h2o
EX_lac__D_e fba__R_EX_lac__D_e D-lactate exchange
[0.0 1000.0]
fba__lac__D_e ⇆
BQB_IS
lac__D
EX_mal__L_e fba__R_EX_mal__L_e L-Malate exchange
[0.0 1000.0]
fba__mal__L_e ⇆
BQB_IS
mal__L
EX_nh4_e fba__R_EX_nh4_e Ammonia exchange
[-1000.0 1000.0]
fba__nh4_e ⇆
BQB_IS
nh4
EX_o2_e fba__R_EX_o2_e O2 exchange
[-1000.0 1000.0]
fba__o2_e ⇆
BQB_IS
o2
EX_pi_e fba__R_EX_pi_e Phosphate exchange
[-1000.0 1000.0]
fba__pi_e ⇆
BQB_IS
pi
EX_pyr_e fba__R_EX_pyr_e Pyruvate exchange
[0.0 1000.0]
fba__pyr_e ⇆
BQB_IS
pyr
EX_succ_e fba__R_EX_succ_e Succinate exchange
[0.0 1000.0]
fba__succ_e ⇆
BQB_IS
succ
fba__FBA fba__R_FBA Fructose-bisphosphate aldolase
[-1000.0 1000.0]
(b1773 or b2097 or b2925)
fba__fdp_c ⇆ fba__dhap_c + fba__g3p_c
BQB_IS
FBA
fba__FBP fba__R_FBP Fructose-bisphosphatase
[0.0 1000.0]
(b3925 or b4232)
fba__fdp_c + fba__h2o_c ➞ fba__f6p_c + fba__pi_c
BQB_IS
FBP
fba__FORt2 fba__R_FORt2 Formate transport in via proton symport
[0.0 1000.0]
(b0904 or b2492)
fba__for_e + fba__h_e ➞ fba__for_c + fba__h_c
BQB_IS
FORt2
fba__FORti fba__R_FORti Formate transport via diffusion
[0.0 1000.0]
(b0904 or b2492)
fba__for_c ➞ fba__for_e
BQB_IS
FORti
fba__FRD7 fba__R_FRD7 Fumarate reductase
[0.0 1000.0]
(b4153 and b4151 and b4152 and b4154)
fba__fum_c + fba__q8h2_c ➞ fba__q8_c + fba__succ_c
BQB_IS
FRD7
fba__FRUpts2 fba__R_FRUpts2 Fructose transport via PEP:Pyr PTS (f6p generating)
[0.0 1000.0]
(b2415 and b1818 and b1817 and b1819 and b2416)
fba__fru_e + fba__pep_c ➞ fba__f6p_c + fba__pyr_c
BQB_IS
FRUpts2
fba__FUM fba__R_FUM Fumarase
[-1000.0 1000.0]
(b4122 or b1612 or b1611)
fba__fum_c + fba__h2o_c ⇆ fba__mal__L_c
BQB_IS
FUM
fba__FUMt2_2 fba__R_FUMt2_2 Fumarate transport via proton symport (2 H)
[0.0 1000.0]
b3528
fba__fum_e + 2.0 fba__h_e ➞ fba__fum_c + 2.0 fba__h_c
BQB_IS
FUMt2_2
fba__G6PDH2r fba__R_G6PDH2r Glucose 6-phosphate dehydrogenase
[-1000.0 1000.0]
b1852
fba__g6p_c + fba__nadp_c ⇆ fba__M_6pgl_c + fba__h_c + fba__nadph_c
BQB_IS
G6PDH2r
fba__GAPD fba__R_GAPD Glyceraldehyde-3-phosphate dehydrogenase
[-1000.0 1000.0]
b1779
fba__g3p_c + fba__nad_c + fba__pi_c ⇆ fba__M_13dpg_c + fba__h_c + fba__nadh_c
BQB_IS
GAPD
fba__GLCpts fba__R_GLCpts D-glucose transport via PEP:Pyr PTS
[0.0 1000.0]
((b2415 and b1818 and b1817 and b1819 and b2416) or (b2415 and b2417 and b1101 and b2416) or (b2415 and b2417 and b1621 and b2416))
fba__glc__D_e + fba__pep_c ➞ fba__g6p_c + fba__pyr_c
BQB_IS
GLCpts
fba__GLNS fba__R_GLNS Glutamine synthetase
[0.0 1000.0]
(b3870 or b1297)
fba__atp_c + fba__glu__L_c + fba__nh4_c ➞ fba__adp_c + fba__gln__L_c + fba__h_c + fba__pi_c
BQB_IS
GLNS
fba__GLNabc fba__R_GLNabc GLNabc
[0.0 1000.0]
(b0810 and b0811 and b0809)
fba__atp_c + fba__gln__L_e + fba__h2o_c ➞ fba__adp_c + fba__gln__L_c + fba__h_c + fba__pi_c
BQB_IS
GLNabc
fba__GLUDy fba__R_GLUDy Glutamate dehydrogenase (NADP)
[-1000.0 1000.0]
b1761
fba__glu__L_c + fba__h2o_c + fba__nadp_c ⇆ fba__akg_c + fba__h_c + fba__nadph_c + fba__nh4_c
BQB_IS
GLUDy
fba__GLUN fba__R_GLUN Glutaminase
[0.0 1000.0]
(b0485 or b1812 or b1524)
fba__gln__L_c + fba__h2o_c ➞ fba__glu__L_c + fba__nh4_c
BQB_IS
GLUN
fba__GLUSy fba__R_GLUSy Glutamate synthase (NADPH)
[0.0 1000.0]
(b3212 and b3213)
fba__akg_c + fba__gln__L_c + fba__h_c + fba__nadph_c ➞ 2.0 fba__glu__L_c + fba__nadp_c
BQB_IS
GLUSy
fba__GLUt2r fba__R_GLUt2r L glutamate transport via proton symport reversible
[-1000.0 1000.0]
b4077
fba__glu__L_e + fba__h_e ⇆ fba__glu__L_c + fba__h_c
BQB_IS
GLUt2r
fba__GND fba__R_GND Phosphogluconate dehydrogenase
[0.0 1000.0]
b2029
fba__M_6pgc_c + fba__nadp_c ➞ fba__co2_c + fba__nadph_c + fba__ru5p__D_c
BQB_IS
GND
fba__H2Ot fba__R_H2Ot H2O transport via diffusion
[-1000.0 1000.0]
(b0875 or s0001)
fba__h2o_e ⇆ fba__h2o_c
BQB_IS
H2Ot
fba__ICDHyr fba__R_ICDHyr Isocitrate dehydrogenase (NADP)
[-1000.0 1000.0]
b1136
fba__icit_c + fba__nadp_c ⇆ fba__akg_c + fba__co2_c + fba__nadph_c
BQB_IS
ICDHyr
fba__ICL fba__R_ICL Isocitrate lyase
[0.0 1000.0]
b4015
fba__icit_c ➞ fba__glx_c + fba__succ_c
BQB_IS
ICL
fba__LDH_D fba__R_LDH_D D-lactate dehydrogenase
[-1000.0 1000.0]
(b2133 or b1380)
fba__lac__D_c + fba__nad_c ⇆ fba__h_c + fba__nadh_c + fba__pyr_c
BQB_IS
LDH_D
fba__MALS fba__R_MALS Malate synthase
[0.0 1000.0]
(b4014 or b2976)
fba__accoa_c + fba__glx_c + fba__h2o_c ➞ fba__coa_c + fba__h_c + fba__mal__L_c
BQB_IS
MALS
fba__MALt2_2 fba__R_MALt2_2 Malate transport via proton symport (2 H)
[0.0 1000.0]
b3528
2.0 fba__h_e + fba__mal__L_e ➞ 2.0 fba__h_c + fba__mal__L_c
BQB_IS
MALt2_2
fba__MDH fba__R_MDH Malate dehydrogenase
[-1000.0 1000.0]
b3236
fba__mal__L_c + fba__nad_c ⇆ fba__h_c + fba__nadh_c + fba__oaa_c
BQB_IS
MDH
fba__ME1 fba__R_ME1 Malic enzyme (NAD)
[0.0 1000.0]
b1479
fba__mal__L_c + fba__nad_c ➞ fba__co2_c + fba__nadh_c + fba__pyr_c
BQB_IS
ME1
fba__ME2 fba__R_ME2 Malic enzyme (NADP)
[0.0 1000.0]
b2463
fba__mal__L_c + fba__nadp_c ➞ fba__co2_c + fba__nadph_c + fba__pyr_c
BQB_IS
ME2
fba__NADH16 fba__R_NADH16 NADH dehydrogenase (ubiquinone-8 & 3 protons)
[0.0 1000.0]
(b2287 and b2285 and b2283 and b2281 and b2279 and b2277 and b2276 and b2278 and b2280 and b2282 and b2284 and b2286 and b2288)
4.0 fba__h_c + fba__nadh_c + fba__q8_c ➞ 3.0 fba__h_e + fba__nad_c + fba__q8h2_c
BQB_IS
NADH16
fba__NADTRHD fba__R_NADTRHD NAD transhydrogenase
[0.0 1000.0]
(b3962 or (b1602 and b1603))
fba__nad_c + fba__nadph_c ➞ fba__nadh_c + fba__nadp_c
BQB_IS
NADTRHD
fba__NH4t fba__R_NH4t Ammonia reversible transport
[-1000.0 1000.0]
(s0001 or b0451)
fba__nh4_e ⇆ fba__nh4_c
BQB_IS
NH4t
fba__O2t fba__R_O2t O2 transport diffusion
[-1000.0 1000.0]
s0001
fba__o2_e ⇆ fba__o2_c
BQB_IS
O2t
fba__PDH fba__R_PDH Pyruvate dehydrogenase
[0.0 1000.0]
(b0115 and b0114 and b0116)
fba__coa_c + fba__nad_c + fba__pyr_c ➞ fba__accoa_c + fba__co2_c + fba__nadh_c
BQB_IS
PDH
fba__PFK fba__R_PFK Phosphofructokinase
[0.0 1000.0]
(b3916 or b1723)
fba__atp_c + fba__f6p_c ➞ fba__adp_c + fba__fdp_c + fba__h_c
BQB_IS
PFK
fba__PFL fba__R_PFL Pyruvate formate lyase
[0.0 1000.0]
((b0902 and b3114) or (b0903 and b0902 and b2579) or (b0902 and b0903) or (b3951 and b3952))
fba__coa_c + fba__pyr_c ➞ fba__accoa_c + fba__for_c
BQB_IS
PFL
fba__PGI fba__R_PGI Glucose-6-phosphate isomerase
[-1000.0 1000.0]
b4025
fba__g6p_c ⇆ fba__f6p_c
BQB_IS
PGI
fba__PGK fba__R_PGK Phosphoglycerate kinase
[-1000.0 1000.0]
b2926
fba__M_3pg_c + fba__atp_c ⇆ fba__M_13dpg_c + fba__adp_c
BQB_IS
PGK
fba__PGL fba__R_PGL 6-phosphogluconolactonase
[0.0 1000.0]
b0767
fba__M_6pgl_c + fba__h2o_c ➞ fba__M_6pgc_c + fba__h_c
BQB_IS
PGL
fba__PGM fba__R_PGM Phosphoglycerate mutase
[-1000.0 1000.0]
(b4395 or b3612 or b0755)
fba__M_2pg_c ⇆ fba__M_3pg_c
BQB_IS
PGM
fba__PIt2r fba__R_PIt2r Phosphate reversible transport via symport
[-1000.0 1000.0]
(b2987 or b3493)
fba__h_e + fba__pi_e ⇆ fba__h_c + fba__pi_c
BQB_IS
PIt2r
fba__PPC fba__R_PPC Phosphoenolpyruvate carboxylase
[0.0 1000.0]
b3956
fba__co2_c + fba__h2o_c + fba__pep_c ➞ fba__h_c + fba__oaa_c + fba__pi_c
BQB_IS
PPC
fba__PPCK fba__R_PPCK Phosphoenolpyruvate carboxykinase
[0.0 1000.0]
b3403
fba__atp_c + fba__oaa_c ➞ fba__adp_c + fba__co2_c + fba__pep_c
BQB_IS
PPCK
fba__PPS fba__R_PPS Phosphoenolpyruvate synthase
[0.0 1000.0]
b1702
fba__atp_c + fba__h2o_c + fba__pyr_c ➞ fba__amp_c + 2.0 fba__h_c + fba__pep_c + fba__pi_c
BQB_IS
PPS
fba__PTAr fba__R_PTAr Phosphotransacetylase
[-1000.0 1000.0]
(b2297 or b2458)
fba__accoa_c + fba__pi_c ⇆ fba__actp_c + fba__coa_c
BQB_IS
PTAr
fba__PYK fba__R_PYK Pyruvate kinase
[0.0 1000.0]
(b1854 or b1676)
fba__adp_c + fba__h_c + fba__pep_c ➞ fba__atp_c + fba__pyr_c
BQB_IS
PYK
fba__PYRt2 fba__R_PYRt2 Pyruvate transport in via proton symport
[-1000.0 1000.0]
fba__h_e + fba__pyr_e ⇆ fba__h_c + fba__pyr_c
BQB_IS
PYRt2
fba__RPE fba__R_RPE Ribulose 5-phosphate 3-epimerase
[-1000.0 1000.0]
(b3386 or b4301)
fba__ru5p__D_c ⇆ fba__xu5p__D_c
BQB_IS
RPE
fba__RPI fba__R_RPI Ribose-5-phosphate isomerase
[-1000.0 1000.0]
(b2914 or b4090)
fba__r5p_c ⇆ fba__ru5p__D_c
BQB_IS
RPI
fba__SUCCt2_2 fba__R_SUCCt2_2 Succinate transport via proton symport (2 H)
[0.0 1000.0]
b3528
2.0 fba__h_e + fba__succ_e ➞ 2.0 fba__h_c + fba__succ_c
BQB_IS
SUCCt2_2
fba__SUCCt3 fba__R_SUCCt3 Succinate transport out via proton antiport
[0.0 1000.0]
fba__h_e + fba__succ_c ➞ fba__h_c + fba__succ_e
BQB_IS
SUCCt3
fba__SUCDi fba__R_SUCDi Succinate dehydrogenase (irreversible)
[0.0 1000.0]
(b0723 and b0721 and b0722 and b0724)
fba__q8_c + fba__succ_c ➞ fba__fum_c + fba__q8h2_c
BQB_IS
SUCDi
fba__SUCOAS fba__R_SUCOAS Succinyl-CoA synthetase (ADP-forming)
[-1000.0 1000.0]
(b0728 and b0729)
fba__atp_c + fba__coa_c + fba__succ_c ⇆ fba__adp_c + fba__pi_c + fba__succoa_c
BQB_IS
SUCOAS
fba__TALA fba__R_TALA Transaldolase
[-1000.0 1000.0]
(b2464 or b0008)
fba__g3p_c + fba__s7p_c ⇆ fba__e4p_c + fba__f6p_c
BQB_IS
TALA
fba__THD2 fba__R_THD2 NAD(P) transhydrogenase
[0.0 1000.0]
(b1602 and b1603)
2.0 fba__h_e + fba__nadh_c + fba__nadp_c ➞ 2.0 fba__h_c + fba__nad_c + fba__nadph_c
BQB_IS
THD2
fba__TKT1 fba__R_TKT1 Transketolase
[-1000.0 1000.0]
(b2935 or b2465)
fba__r5p_c + fba__xu5p__D_c ⇆ fba__g3p_c + fba__s7p_c
BQB_IS
TKT1
fba__TKT2 fba__R_TKT2 Transketolase
[-1000.0 1000.0]
(b2935 or b2465)
fba__e4p_c + fba__xu5p__D_c ⇆ fba__f6p_c + fba__g3p_c
BQB_IS
TKT2
fba__TPI fba__R_TPI Triose-phosphate isomerase
[-1000.0 1000.0]
b3919
fba__dhap_c ⇆ fba__g3p_c
BQB_IS
TPI
EX_X
[0.0 1000.0]
fba__X ⇆
update__update_mal__L_e
mal__L_e ⇆ pEX_mal__L_e 10 3 mole 3600 s
update__update_acald_e
acald_e ⇆ pEX_acald_e 10 3 mole 3600 s
update__update_pyr_e
pyr_e ⇆ pEX_pyr_e 10 3 mole 3600 s
update__update_glc__D_e
glc__D_e ⇆ pEX_glc__D_e 10 3 mole 3600 s
update__update_etoh_e
etoh_e ⇆ pEX_etoh_e 10 3 mole 3600 s
update__update_nh4_e
nh4_e ⇆ pEX_nh4_e 10 3 mole 3600 s
update__update_h2o_e
h2o_e ⇆ pEX_h2o_e 10 3 mole 3600 s
update__update_ac_e
ac_e ⇆ pEX_ac_e 10 3 mole 3600 s
update__update_akg_e
akg_e ⇆ pEX_akg_e 10 3 mole 3600 s
update__update_co2_e
co2_e ⇆ pEX_co2_e 10 3 mole 3600 s
update__update_lac__D_e
lac__D_e ⇆ pEX_lac__D_e 10 3 mole 3600 s
update__update_fum_e
fum_e ⇆ pEX_fum_e 10 3 mole 3600 s
update__update_fru_e
fru_e ⇆ pEX_fru_e 10 3 mole 3600 s
update__update_for_e
for_e ⇆ pEX_for_e 10 3 mole 3600 s
update__update_gln__L_e
gln__L_e ⇆ pEX_gln__L_e 10 3 mole 3600 s
update__update_succ_e
succ_e ⇆ pEX_succ_e 10 3 mole 3600 s
update__update_h_e
h_e ⇆ pEX_h_e 10 3 mole 3600 s
update__update_pi_e
pi_e ⇆ pEX_pi_e 10 3 mole 3600 s
update__update_X
X ⇆ pEX_X 10 3 mole 3600 s
update__update_glu__L_e
glu__L_e ⇆ pEX_glu__L_e 10 3 mole 3600 s
update__update_o2_e
o2_e ⇆ pEX_o2_e 10 3 mole 3600 s

Objectives [1] name type flux objectives sbo cvterm
fba__obj maximize +1.0*fba__BIOMASS_Ecoli_core_w_GAM