{% extends "base.html" %} {% block content %}

1 - Summary

{{ summary }}
{% if not __section_skip_volcano %}

2 - Volcano Plot

 
{% endif %} {% if not __section_skip_manova %}

3 - Explore all significant results

There were {{ manova }} significant associations found. All significant associations have been gathered in the following link:

MANOVA results

{% endif %} {% if not __section_skip_feature_summary %}

4 - Feature summary

Features most frequently associated with a drug response

summary of significant features
You can download the significant-features table in csv format.
{% endif %} {% if not __section_skip_drug_summary %}

5 - Drug Summary

Drug most frequently associated with a feature

summary of significant drugs
You can download the significant-drug table in csv format.
{% endif %} {% if not __section_skip_drug_associations %}

6 - Drug wise associations

The following table provides links to dedicated pages for each significant drug (sorted by mean ascending FDR across all features) {{ drug_table }}

{{ drug_not_tested }}

{% endif %} {% if not __section_skip_feature_associations %}

7 - Feature wise associations

The following table provides links to dedicated pages for each feature that has been tested. Some features may be missing if no valid association could be computed. The 'hits' columns indicates the number of significant hits. {{ feature_table }}

{% endif %}

8 - Cell line information

{{ cosmic_table }}

9 - Settings and input files

This page and the results were created using a script similar to:


        from gdsctools import ANOVA, ANOVAReport

        gdsc = ANOVA(ic50_filename, genomic_features)
        gdsc.read_settings('settings.json')

        # Analyse the data
        results = gdsc.anova_all()

        # Create the HTML report
        r = ANOVAReport(gdsc, results)
        r.create_html_pages(onweb=False)
    
(Go to code directory and execute rerun.py.)

The settings are in the INPUT directory and here below:

{{ settings_table }}
The input files are in the INPUT directory and here below:

10 - Dependencies

{{ dependencies }}
{% endblock %}