Command: downsample

Downsample a .ccf file in proportion to the value column

Required parameters:

  • -i INPUT, –input INPUT: Input .ccf file

  • -o, –output OUTPUT: Output file (CCF format)

  • -n, –number NUMBER: Number of entries to downsample to (cannot exceed length of input file)

Optional parameters:

  • -s SEED, –seed SEED: Random seed

  • –naive: Sample every row with equal likelihood