Command: segment¶
Segment a .ccf file using Bayesian blocks
Required parameters:
-i, –input INPUT: Input .ccf file
output: Output file (BED format)
Optional parameters:
–prior PRIOR: Explicit prior on the number of blocks (not recommended for general use)
–p0 P0: Empirical prior based on a specified false-positive rate; must be between 0 and 1 (default: 0.05)
–method {OP,PELT}: Segment using the optimal partitioning (OP) or pruned exact linear time (PELT) algorithm (default: PELT)