Source code for bioblend.galaxy.tool_data

"""
Contains possible interactions with the Galaxy Tool data tables
"""
from bioblend.galaxy.client import Client


[docs]class ToolDataClient(Client): def __init__(self, galaxy_instance): self.module = 'tool_data' super(ToolDataClient, self).__init__(galaxy_instance)
[docs] def get_data_tables(self): """ Displays a collection (list) of data tables. :rtype: list :return: A list of dicts with details on individual data tables. For example:: [ { "model_class": "TabularToolDataTable", "name": "fasta_indexes" }, { "model_class": "TabularToolDataTable", "name": "bwa_indexes" } } """ return Client._get(self)
[docs] def show_data_table(self, data_table_id): """ Display information on a single data_table :type data_table_id: str :param data_table_id: ID of the data table :rtype: dict :return: A description of data_table and its content For example:: { "columns": ["value", "dbkey", "name", "path"], "fields": [ [ "test id", "test", "test name", "/opt/galaxy-dist/tool-data/test/seq/test id.fa" ] ], "model_class": "TabularToolDataTable", "name": "all_fasta" } """ return Client._get(self, id=data_table_id)
[docs] def delete_data_table(self, data_table_id, values): """ Delete an item from a data table. :type data_table_id: str :param data_table_id: ID of the data table :type values: str :param values: a "|" separated list of column contents, there must be a value for all the columns of the data table """ payload = {} payload['values'] = values return Client._delete(self, payload, id=data_table_id)