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object --+ | SequenceDataQuery --+ | RegionQuery
This module allows you to construct queries that retrieve data about sequences and sequence features in biologically relevant formats, where those features are located overlapping genomic intervals.
The currently supported formats are UCSC-BED, GFF3, and FASTA.
These queries may also be used to construct lists with.
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dict |
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str |
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Inherited from Inherited from |
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LIST_PATH =
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BED_PATH =
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FASTA_PATH =
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GFF3_PATH =
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query | |||
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Constructor>>> s = Service("www.flymine.org/query", "API-KEY") >>> org = "D. melanogaster" >>> regions = ["2L:14614843..14619614"] >>> feature_types = ["Exon", "Intron"] >>> q = RegionQuery(s, org, feature_types, regions) <interminebio.RegionQuery @xxx>
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query
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