Package interminebio :: Class SequenceDataQuery
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Class SequenceDataQuery

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object --+
         |
        SequenceDataQuery
Known Subclasses:

Instance Methods [hide private]
 
bed(self, ucsc_compatible=True)
Return a BedIterator object, which stringifies to the BED results, and works as an iterator over the lines.
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fasta(self)
Return a FastaIterator object, which stringifies to the Fasta results, and works as an iterator over the records (not the lines).
source code
 
gff3(self)
Return a GFF3Iterator object, which stringifies to the GFF3 results, and works as an iterator over the lines.
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Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __init__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Properties [hide private]

Inherited from object: __class__

Method Details [hide private]

bed(self, ucsc_compatible=True)

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Get results as BED

Return a BedIterator object, which stringifies to the BED results, and works as an iterator over the lines. After iteration the header information is accessible with the iter.header() method

fasta(self)

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Get results as FASTA

Return a FastaIterator object, which stringifies to the Fasta results, and works as an iterator over the records (not the lines).

When attempting to get results as FASTA the query may only have a single output column. Errors will be raised otherwise.

gff3(self)

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Get results as GFF3

Return a GFF3Iterator object, which stringifies to the GFF3 results, and works as an iterator over the lines. After iteration the header information is accessible with the iter.header() method