Usage¶

Contents:

  • Installation
    • Pre-requisites
    • Installing the stable release of PacBio Data Processing
    • Alternative: Installing PacBio Data Processing from a file
    • Alternative: Installing PacBio Data Processing from the repository
  • Filtering Bam files with bam-filter
  • Single molecule analysis with the sm-analysis program
    • Input
    • Output
    • How it works
    • Command line options
    • Graphical User Interface: sm-analysis-gui
  • Using the package as a library

PacBio Data Processing

Navigation

Contents:

  • Overview
  • Quickstart for the impatient
  • Quickstart on a cluster
  • Usage
  • Guides
  • Developer’s documentation

Related Topics

  • Documentation overview
    • Previous: Quickstart on a cluster
    • Next: Installation

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