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6.5. Base classes for the selection writers

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7.1. Core functions of MDAnalysis

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7. Core modules¶

The MDAnalysis.core modules contain functionality essential for MDAnalysis, such as the central data structures in MDAnalysis.core.AtomGroup or the selection definitions and parsing in MDAnalysis.core.Selection.

Contents

  • 7.1. Core functions of MDAnalysis
  • 7.2. Fundamental building blocks — MDAnalysis.core.AtomGroup
  • 7.3. Atom selection Hierarchy — MDAnalysis.core.Selection
  • 7.4. Compute observable timeseries from trajectories — MDAnalysis.core.Timeseries
  • 7.5. Fast distance array computation — MDAnalysis.core.distances
  • 7.6. Homogeneous Transformation Matrices and Quaternions — MDAnalysis.core.transformations
  • 7.7. Fast QCP RMSD structure alignment — MDAnalysis.core.qcprot
  • 7.8. Constants and unit conversion — MDAnalysis.core.units
  • 7.9. Helper functions — MDAnalysis.core.util
  • 7.10. Setting up logging — MDAnalysis.core.log
  • 7.11. Parallel algorithms for MDAnalysis

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