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Ruffus Manual: Table of Contents:ΒΆ

manual_introduction

  1. follows
  2. tasks_as_recipes
  3. files
  4. tasks_and_globs_in_inputs
  5. tracing_pipeline_parameters
  6. parallel_processing
  7. split
  8. transform
  9. merge
  10. posttask
  11. jobs_limit
  12. dependencies
  13. onthefly
  14. collate
  15. advanced_transform
  16. parallel
  17. check_if_uptodate
  18. exceptions
  19. logging
  20. files_re

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Quick Reference:

    Core:

    • @originate
    • @split
    • @transform
    • @merge

    Advanced

    • @subdivide
    • @transform (add_inputs)
    • @collate
    • @collate (add_inputs)
    • @graphviz
    • @mkdir
    • @follows / mkdir
    • @posttask touch_file
    • @active_if
    • @jobs_limit

    Combinatorial:

    • @product
    • @permutations
    • @combinations
    • @combinations_ _with_replacement

    Esoteric

    • @files (on the fly)
    • @parallel
    • @check_if_uptodate

    Indicator objects

    Pipeline functions

    • pipeline_run
    • pipeline_printout
    • pipeline_printout_graph
    • pipeline_get_task_names
    • drmaa_wrapper.run_job
    Future plans

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  • Ruffus v. 2.5
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