Index

A

a1 (in module pytomography.io.dicom)

a2 (in module pytomography.io.dicom)

B

b1 (in module pytomography.io.dicom) b2 (in module pytomography.io.dicom)

BackProjectionNet (class in pytomography.projections) (class in pytomography.projections.back_projection)

C

CallBack (class in pytomography.callbacks) (class in pytomography.callbacks.callback) compute_kernel_size() (pytomography.corrections.psf_correction.PSFCorrectionNet method) compute_pad_size() (in module pytomography.utils) (in module pytomography.utils.helper_functions) compute_pad_size_padded() (in module pytomography.utils.helper_functions) compute_padded_shape() (pytomography.metadata.ImageMeta method) (pytomography.metadata.metadata.ImageMeta method) (pytomography.metadata.metadata.ObjectMeta method) (pytomography.metadata.ObjectMeta method)

CorrectionNet (class in pytomography.corrections) (class in pytomography.corrections.correction) CTCorrectionNet (class in pytomography.corrections) (class in pytomography.corrections.ct_correction)

D

dicom_CT_to_data() (in module pytomography.io) (in module pytomography.io.dicom)

dicom_projections_to_data() (in module pytomography.io) (in module pytomography.io.dicom) DiffAndSumSmoothnessPrior (class in pytomography.priors.gibbs)

F

find_first_entry_containing_header() (in module pytomography.io.simind) forward() (pytomography.algorithms.osem.OSEMBSR method) (pytomography.algorithms.osem.OSEMOSL method) (pytomography.algorithms.osem.OSML method) (pytomography.algorithms.OSEMBSR method) (pytomography.algorithms.OSEMOSL method) (pytomography.algorithms.OSML method) (pytomography.corrections.correction.CorrectionNet method) (pytomography.corrections.CorrectionNet method) (pytomography.corrections.ct_correction.CTCorrectionNet method) (pytomography.corrections.CTCorrectionNet method) (pytomography.corrections.psf_correction.PSFCorrectionNet method) (pytomography.priors.gibbs.DiffAndSumSmoothnessPrior method) (pytomography.priors.Prior method) (pytomography.priors.prior.Prior method) (pytomography.priors.smoothness.SmoothnessPrior method) (pytomography.projections.back_projection.BackProjectionNet method) (pytomography.projections.BackProjectionNet method) (pytomography.projections.forward_projection.ForwardProjectionNet method) (pytomography.projections.ForwardProjectionNet method)

ForwardProjectionNet (class in pytomography.projections) (class in pytomography.projections.forward_projection) foward() (pytomography.projections.projection.ProjectionNet method) (pytomography.projections.ProjectionNet method)

G

get_affine_CT() (in module pytomography.io.dicom) get_affine_spect() (in module pytomography.io.dicom) get_distance() (in module pytomography.utils) (in module pytomography.utils.helper_functions) get_kernel() (pytomography.priors.gibbs.DiffAndSumSmoothnessPrior method) (pytomography.priors.smoothness.SmoothnessPrior method) get_osem_net() (in module pytomography.algorithms) (in module pytomography.algorithms.osem)

get_prob_of_detection_matrix() (in module pytomography.corrections.ct_correction) get_PSF_transform() (in module pytomography.corrections.psf_correction) get_radii_and_angles() (in module pytomography.io.dicom) get_sigma() (pytomography.corrections.psf_correction.PSFCorrectionNet method) get_subset_splits() (pytomography.algorithms.osem.OSML method) (pytomography.algorithms.OSML method)

H

HU_to_mu() (in module pytomography.io.dicom)

I

ImageMeta (class in pytomography.metadata) (class in pytomography.metadata.metadata) initialize_correction_nets() (pytomography.projections.projection.ProjectionNet method) (pytomography.projections.ProjectionNet method)

initialize_network() (pytomography.corrections.correction.CorrectionNet method) (pytomography.corrections.CorrectionNet method) (pytomography.corrections.psf_correction.PSFCorrectionNet method)

L

LogCoshPrior (class in pytomography.priors) (class in pytomography.priors.smoothness)

M

module pytomography pytomography.algorithms pytomography.algorithms.osem pytomography.callbacks pytomography.callbacks.callback pytomography.corrections pytomography.corrections.correction pytomography.corrections.ct_correction pytomography.corrections.psf_correction pytomography.io pytomography.io.dicom pytomography.io.simind pytomography.metadata pytomography.metadata.metadata pytomography.priors pytomography.priors.gibbs pytomography.priors.prior pytomography.priors.smoothness pytomography.projections pytomography.projections.back_projection pytomography.projections.forward_projection pytomography.projections.projection pytomography.utils pytomography.utils.helper_functions

O

ObjectMeta (class in pytomography.metadata) (class in pytomography.metadata.metadata) OSEMBSR (class in pytomography.algorithms) (class in pytomography.algorithms.osem)

OSEMOSL (class in pytomography.algorithms) (class in pytomography.algorithms.osem) OSML (class in pytomography.algorithms) (class in pytomography.algorithms.osem)

P

pad_image() (in module pytomography.utils) (in module pytomography.utils.helper_functions) pad_object() (in module pytomography.utils) (in module pytomography.utils.helper_functions) pad_object_z() (in module pytomography.utils) (in module pytomography.utils.helper_functions) Prior (class in pytomography.priors) (class in pytomography.priors.prior) ProjectionNet (class in pytomography.projections) (class in pytomography.projections.projection) PSFCorrectionNet (class in pytomography.corrections.psf_correction) PSFMeta (class in pytomography.metadata) (class in pytomography.metadata.metadata) pytomography module pytomography.algorithms module pytomography.algorithms.osem module pytomography.callbacks module pytomography.callbacks.callback module pytomography.corrections module pytomography.corrections.correction module pytomography.corrections.ct_correction module pytomography.corrections.psf_correction module

pytomography.io module pytomography.io.dicom module pytomography.io.simind module pytomography.metadata module pytomography.metadata.metadata module pytomography.priors module pytomography.priors.gibbs module pytomography.priors.prior module pytomography.priors.smoothness module pytomography.projections module pytomography.projections.back_projection module pytomography.projections.forward_projection module pytomography.projections.projection module pytomography.utils module pytomography.utils.helper_functions module

Q

QClear() (in module pytomography.priors.gibbs) QClearPrior (class in pytomography.priors) (class in pytomography.priors.gibbs)

QuadraticPrior (class in pytomography.priors) (class in pytomography.priors.smoothness)

R

relation_dict (in module pytomography.io.simind) rev_cumsum() (in module pytomography.utils) (in module pytomography.utils.helper_functions)

rotate_detector_z() (in module pytomography.utils) (in module pytomography.utils.helper_functions) run() (pytomography.callbacks.CallBack method) (pytomography.callbacks.callback.CallBack method)

S

set_beta_scale() (pytomography.priors.Prior method) (pytomography.priors.prior.Prior method) set_device() (pytomography.priors.Prior method) (pytomography.priors.prior.Prior method) set_kernel() (pytomography.priors.gibbs.DiffAndSumSmoothnessPrior method) (pytomography.priors.smoothness.SmoothnessPrior method) set_object() (pytomography.priors.Prior method) (pytomography.priors.prior.Prior method)

set_object_meta() (pytomography.priors.Prior method) (pytomography.priors.prior.Prior method) simind_CT_to_data() (in module pytomography.io) (in module pytomography.io.simind) simind_MEW_to_data() (in module pytomography.io) (in module pytomography.io.simind) simind_projections_to_data() (in module pytomography.io) (in module pytomography.io.simind) SmoothnessPrior (class in pytomography.priors.smoothness)

U

unpad_image() (in module pytomography.utils) (in module pytomography.utils.helper_functions) unpad_object() (in module pytomography.utils) (in module pytomography.utils.helper_functions)

unpad_object_z() (in module pytomography.utils) (in module pytomography.utils.helper_functions)