Index

_

__call__() (pytomography.algorithms.osem.OSEMBSR method) (pytomography.algorithms.osem.OSEMOSL method) (pytomography.algorithms.osem.OSML method) (pytomography.algorithms.OSEMBSR method) (pytomography.algorithms.OSEMOSL method) (pytomography.algorithms.OSML method) (pytomography.priors.nearest_neighbour.NearestNeighbourPrior method) (pytomography.priors.NearestNeighbourPrior method) (pytomography.priors.Prior method) (pytomography.priors.prior.Prior method) (pytomography.transforms.PET.attenuation.PETAttenuationTransform method) (pytomography.transforms.PET.PETAttenuationTransform method) (pytomography.transforms.PET.PETPSFTransform method) (pytomography.transforms.PET.psf.PETPSFTransform method) (pytomography.transforms.PETAttenuationTransform method) (pytomography.transforms.PETPSFTransform method) (pytomography.transforms.SPECT.atteunation.SPECTAttenuationTransform method) (pytomography.transforms.SPECT.psf.SPECTPSFTransform method) (pytomography.transforms.SPECT.SPECTAttenuationTransform method) (pytomography.transforms.SPECT.SPECTPSFTransform method) (pytomography.transforms.SPECTAttenuationTransform method) (pytomography.transforms.SPECTPSFTransform method) (pytomography.transforms.Transform method) (pytomography.transforms.transform.Transform method)

B

backward() (pytomography.projections.system_matrix.SystemMatrix method) (pytomography.projections.SystemMatrix method)

C

CallBack (class in pytomography.callbacks) (class in pytomography.callbacks.callback) compute_kernel_size() (pytomography.transforms.SPECT.psf.SPECTPSFTransform method) (pytomography.transforms.SPECT.SPECTPSFTransform method) (pytomography.transforms.SPECTPSFTransform method) compute_pad_size() (in module pytomography.utils) (in module pytomography.utils.helper_functions) compute_pad_size_padded() (in module pytomography.utils.helper_functions) compute_padded_shape() (pytomography.metadata.ImageMeta method) (pytomography.metadata.metadata.ImageMeta method) (pytomography.metadata.metadata.ObjectMeta method) (pytomography.metadata.ObjectMeta method) configure() (pytomography.transforms.PET.attenuation.PETAttenuationTransform method) (pytomography.transforms.PET.PETAttenuationTransform method) (pytomography.transforms.PET.PETPSFTransform method) (pytomography.transforms.PET.psf.PETPSFTransform method) (pytomography.transforms.PETAttenuationTransform method) (pytomography.transforms.PETPSFTransform method) (pytomography.transforms.SPECT.psf.SPECTPSFTransform method) (pytomography.transforms.SPECT.SPECTPSFTransform method) (pytomography.transforms.SPECTPSFTransform method) (pytomography.transforms.Transform method) (pytomography.transforms.transform.Transform method)

construct_matrix() (pytomography.transforms.PET.PETPSFTransform method) (pytomography.transforms.PET.psf.PETPSFTransform method) (pytomography.transforms.PETPSFTransform method)

D

device (in module pytomography) dicom_CT_to_data() (in module pytomography.io) (in module pytomography.io.dicom)

dicom_MEW_to_data() (in module pytomography.io) (in module pytomography.io.dicom) dicom_projections_to_data() (in module pytomography.io) (in module pytomography.io.dicom)

F

find_first_entry_containing_header() (in module pytomography.io.simind)

forward() (pytomography.projections.system_matrix.SystemMatrix method) (pytomography.projections.SystemMatrix method)

G

get_affine_CT() (in module pytomography.io.dicom) get_affine_spect() (in module pytomography.io.dicom) get_distance() (in module pytomography.utils) (in module pytomography.utils.helper_functions) get_HU2mu_coefficients() (in module pytomography.io.dicom) get_object_nearest_neighbour() (in module pytomography.utils) (in module pytomography.utils.helper_functions) get_prob_of_detection_matrix() (in module pytomography.transforms.PET.attenuation) (in module pytomography.transforms.SPECT.atteunation) get_PSF_transform() (in module pytomography.transforms.SPECT.psf)

get_radii_and_angles() (in module pytomography.io.dicom) get_sigma() (pytomography.transforms.SPECT.psf.SPECTPSFTransform method) (pytomography.transforms.SPECT.SPECTPSFTransform method) (pytomography.transforms.SPECTPSFTransform method) get_SPECT_recon_algorithm_dicom() (in module pytomography.io) (in module pytomography.io.dicom) get_SPECT_recon_algorithm_simind() (in module pytomography.io) (in module pytomography.io.simind) get_subset_splits() (pytomography.algorithms.osem.OSML method) (pytomography.algorithms.OSML method)

H

HU_to_mu() (in module pytomography.io.dicom)

I

ImageMeta (class in pytomography.metadata) (class in pytomography.metadata.metadata)

initialize_correction_nets() (pytomography.projections.system_matrix.SystemMatrix method) (pytomography.projections.SystemMatrix method)

K

kernel_noncol() (in module pytomography.transforms.PET.psf)

kernel_penetration() (in module pytomography.transforms.PET.psf) kernel_scattering() (in module pytomography.transforms.PET.psf)

L

LogCoshPrior (class in pytomography.priors) (class in pytomography.priors.nearest_neighbour)

M

module pytomography pytomography.algorithms pytomography.algorithms.osem pytomography.callbacks pytomography.callbacks.callback pytomography.io pytomography.io.dicom pytomography.io.simind pytomography.metadata pytomography.metadata.metadata pytomography.priors pytomography.priors.nearest_neighbour pytomography.priors.prior pytomography.projections pytomography.projections.system_matrix pytomography.transforms pytomography.transforms.PET pytomography.transforms.PET.attenuation pytomography.transforms.PET.psf pytomography.transforms.SPECT pytomography.transforms.SPECT.atteunation pytomography.transforms.SPECT.psf pytomography.transforms.transform pytomography.utils pytomography.utils.helper_functions

N

NearestNeighbourPrior (class in pytomography.priors) (class in pytomography.priors.nearest_neighbour)

O

ObjectMeta (class in pytomography.metadata) (class in pytomography.metadata.metadata) OSEMBSR (class in pytomography.algorithms) (class in pytomography.algorithms.osem)

OSEMOSL (class in pytomography.algorithms) (class in pytomography.algorithms.osem) OSML (class in pytomography.algorithms) (class in pytomography.algorithms.osem)

P

pad_image() (in module pytomography.utils) (in module pytomography.utils.helper_functions) pad_object() (in module pytomography.utils) (in module pytomography.utils.helper_functions) pad_object_z() (in module pytomography.utils) (in module pytomography.utils.helper_functions) PETAttenuationTransform (class in pytomography.transforms) (class in pytomography.transforms.PET) (class in pytomography.transforms.PET.attenuation) PETPSFMeta (class in pytomography.metadata.metadata) PETPSFTransform (class in pytomography.transforms) (class in pytomography.transforms.PET) (class in pytomography.transforms.PET.psf) Prior (class in pytomography.priors) (class in pytomography.priors.prior) PSFMeta (class in pytomography.metadata) (class in pytomography.metadata.metadata) pytomography module pytomography.algorithms module pytomography.algorithms.osem module pytomography.callbacks module pytomography.callbacks.callback module pytomography.io module pytomography.io.dicom module pytomography.io.simind module

pytomography.metadata module pytomography.metadata.metadata module pytomography.priors module pytomography.priors.nearest_neighbour module pytomography.priors.prior module pytomography.projections module pytomography.projections.system_matrix module pytomography.transforms module pytomography.transforms.PET module pytomography.transforms.PET.attenuation module pytomography.transforms.PET.psf module pytomography.transforms.SPECT module pytomography.transforms.SPECT.atteunation module pytomography.transforms.SPECT.psf module pytomography.transforms.transform module pytomography.utils module pytomography.utils.helper_functions module

Q

QuadraticPrior (class in pytomography.priors) (class in pytomography.priors.nearest_neighbour)

R

relation_dict (in module pytomography.io.simind) RelativeDifferencePrior (class in pytomography.priors) (class in pytomography.priors.nearest_neighbour) rev_cumsum() (in module pytomography.utils) (in module pytomography.utils.helper_functions)

rotate_detector_z() (in module pytomography.utils) (in module pytomography.utils.helper_functions) run() (pytomography.callbacks.CallBack method) (pytomography.callbacks.callback.CallBack method)

S

set_beta_scale() (pytomography.priors.Prior method) (pytomography.priors.prior.Prior method) set_object() (pytomography.priors.Prior method) (pytomography.priors.prior.Prior method) set_object_meta() (pytomography.priors.Prior method) (pytomography.priors.prior.Prior method) simind_CT_to_data() (in module pytomography.io) (in module pytomography.io.simind) simind_MEW_to_data() (in module pytomography.io) (in module pytomography.io.simind)

simind_projections_to_data() (in module pytomography.io) (in module pytomography.io.simind) SPECTAttenuationTransform (class in pytomography.transforms) (class in pytomography.transforms.SPECT) (class in pytomography.transforms.SPECT.atteunation) SPECTPSFTransform (class in pytomography.transforms) (class in pytomography.transforms.SPECT) (class in pytomography.transforms.SPECT.psf) SystemMatrix (class in pytomography.projections) (class in pytomography.projections.system_matrix)

T

Transform (class in pytomography.transforms) (class in pytomography.transforms.transform)

U

unpad_image() (in module pytomography.utils) (in module pytomography.utils.helper_functions) unpad_object() (in module pytomography.utils) (in module pytomography.utils.helper_functions)

unpad_object_z() (in module pytomography.utils) (in module pytomography.utils.helper_functions)