E.coli core DFBA model
Model version: 2
UPDATE submodel
Submodel for dynamically updating the metabolite count. This updates the ode model based on the FBA fluxes.
Description
This is a metabolism model of Homo sapiens in SBML format.
Terms of use
Redistribution and use of any part of this model from BiGG Models knowledge-base, with or without modification, are permitted provided that the following conditions are met:
- Redistributions of this SBML file must retain the above copyright notice, this list of conditions and the following disclaimer.
- Redistributions in a different form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution.
For specific licensing terms about this particular model and regulations of commercial use, see this model in BiGG Models knowledge-base.
References
When using content from BiGG Models knowledge-base in your research works, please cite- King ZA, Lu JS, Dräger A, Miller PC, Federowicz S, Lerman JA, Ebrahim A, Palsson BO, and Lewis NE. (2015).
- BiGG Models: A platform for integrating, standardizing, and sharing genome-scale models. Nucl Acids Res. doi:10.1093/nar/gkv1049
Model : rbc_update
CreatorMatthias, Koenig, Humboldt University Berlin, konigmatt@googlemail.com
Created: 2018-11-01 12:49
Modified: 2018-11-01 12:49
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type | Ports [153] | name | referenced element | port ref | id ref | unit ref | metaid ref | sbo | cvterm |
---|---|---|---|---|---|---|---|---|---|
Port | blood_port
|
port blood | Compartment: blood |
blood | |||||
Port | M_35cgmp_e_port
|
port M_35cgmp_e | Species: M_35cgmp_e |
M_35cgmp_e | |||||
Port | M_3moxtyr_e_port
|
port M_3moxtyr_e | Species: M_3moxtyr_e |
M_3moxtyr_e | |||||
Port | M_4pyrdx_e_port
|
port M_4pyrdx_e | Species: M_4pyrdx_e |
M_4pyrdx_e | |||||
Port | M_5aop_e_port
|
port M_5aop_e | Species: M_5aop_e |
M_5aop_e | |||||
Port | ac_e_port
|
port ac_e | Species: ac_e |
ac_e | |||||
Port | acald_e_port
|
port acald_e | Species: acald_e |
acald_e | |||||
Port | acnam_e_port
|
port acnam_e | Species: acnam_e |
acnam_e | |||||
Port | ade_e_port
|
port ade_e | Species: ade_e |
ade_e | |||||
Port | adn_e_port
|
port adn_e | Species: adn_e |
adn_e | |||||
Port | adrnl_e_port
|
port adrnl_e | Species: adrnl_e |
adrnl_e | |||||
Port | ala__L_e_port
|
port ala__L_e | Species: ala__L_e |
ala__L_e | |||||
Port | arg__L_e_port
|
port arg__L_e | Species: arg__L_e |
arg__L_e | |||||
Port | ascb__L_e_port
|
port ascb__L_e | Species: ascb__L_e |
ascb__L_e | |||||
Port | bilglcur_e_port
|
port bilglcur_e | Species: bilglcur_e |
bilglcur_e | |||||
Port | ca2_e_port
|
port ca2_e | Species: ca2_e |
ca2_e | |||||
Port | camp_e_port
|
port camp_e | Species: camp_e |
camp_e | |||||
Port | chol_e_port
|
port chol_e | Species: chol_e |
chol_e | |||||
Port | cl_e_port
|
port cl_e | Species: cl_e |
cl_e | |||||
Port | co_e_port
|
port co_e | Species: co_e |
co_e | |||||
Port | co2_e_port
|
port co2_e | Species: co2_e |
co2_e | |||||
Port | cys__L_e_port
|
port cys__L_e | Species: cys__L_e |
cys__L_e | |||||
Port | dhdascb_e_port
|
port dhdascb_e | Species: dhdascb_e |
dhdascb_e | |||||
Port | dopa_e_port
|
port dopa_e | Species: dopa_e |
dopa_e | |||||
Port | etha_e_port
|
port etha_e | Species: etha_e |
etha_e | |||||
Port | fe2_e_port
|
port fe2_e | Species: fe2_e |
fe2_e | |||||
Port | fru_e_port
|
port fru_e | Species: fru_e |
fru_e | |||||
Port | fum_e_port
|
port fum_e | Species: fum_e |
fum_e | |||||
Port | gal_e_port
|
port gal_e | Species: gal_e |
gal_e | |||||
Port | gam_e_port
|
port gam_e | Species: gam_e |
gam_e | |||||
Port | glc__D_e_port
|
port glc__D_e | Species: glc__D_e |
glc__D_e | |||||
Port | gln__L_e_port
|
port gln__L_e | Species: gln__L_e |
gln__L_e | |||||
Port | gluala_e_port
|
port gluala_e | Species: gluala_e |
gluala_e | |||||
Port | gly_e_port
|
port gly_e | Species: gly_e |
gly_e | |||||
Port | glyc_e_port
|
port glyc_e | Species: glyc_e |
glyc_e | |||||
Port | gthox_e_port
|
port gthox_e | Species: gthox_e |
gthox_e | |||||
Port | h_e_port
|
port h_e | Species: h_e |
h_e | |||||
Port | h2o_e_port
|
port h2o_e | Species: h2o_e |
h2o_e | |||||
Port | h2o2_e_port
|
port h2o2_e | Species: h2o2_e |
h2o2_e | |||||
Port | hco3_e_port
|
port hco3_e | Species: hco3_e |
hco3_e | |||||
Port | hcys__L_e_port
|
port hcys__L_e | Species: hcys__L_e |
hcys__L_e | |||||
Port | hdca_e_port
|
port hdca_e | Species: hdca_e |
hdca_e | |||||
Port | hxan_e_port
|
port hxan_e | Species: hxan_e |
hxan_e | |||||
Port | ins_e_port
|
port ins_e | Species: ins_e |
ins_e | |||||
Port | k_e_port
|
port k_e | Species: k_e |
k_e | |||||
Port | lac__D_e_port
|
port lac__D_e | Species: lac__D_e |
lac__D_e | |||||
Port | lac__L_e_port
|
port lac__L_e | Species: lac__L_e |
lac__L_e | |||||
Port | leuktrA4_e_port
|
port leuktrA4_e | Species: leuktrA4_e |
leuktrA4_e | |||||
Port | leuktrB4_e_port
|
port leuktrB4_e | Species: leuktrB4_e |
leuktrB4_e | |||||
Port | lnlc_e_port
|
port lnlc_e | Species: lnlc_e |
lnlc_e | |||||
Port | mal__L_e_port
|
port mal__L_e | Species: mal__L_e |
mal__L_e | |||||
Port | man_e_port
|
port man_e | Species: man_e |
man_e | |||||
Port | mepi_e_port
|
port mepi_e | Species: mepi_e |
mepi_e | |||||
Port | met__L_e_port
|
port met__L_e | Species: met__L_e |
met__L_e | |||||
Port | na1_e_port
|
port na1_e | Species: na1_e |
na1_e | |||||
Port | nac_e_port
|
port nac_e | Species: nac_e |
nac_e | |||||
Port | ncam_e_port
|
port ncam_e | Species: ncam_e |
ncam_e | |||||
Port | nh4_e_port
|
port nh4_e | Species: nh4_e |
nh4_e | |||||
Port | normete__L_e_port
|
port normete__L_e | Species: normete__L_e |
normete__L_e | |||||
Port | nrpphr_e_port
|
port nrpphr_e | Species: nrpphr_e |
nrpphr_e | |||||
Port | o2_e_port
|
port o2_e | Species: o2_e |
o2_e | |||||
Port | ocdcea_e_port
|
port ocdcea_e | Species: ocdcea_e |
ocdcea_e | |||||
Port | orot_e_port
|
port orot_e | Species: orot_e |
orot_e | |||||
Port | phe__L_e_port
|
port phe__L_e | Species: phe__L_e |
phe__L_e | |||||
Port | pi_e_port
|
port pi_e | Species: pi_e |
pi_e | |||||
Port | ptrc_e_port
|
port ptrc_e | Species: ptrc_e |
ptrc_e | |||||
Port | pydam_e_port
|
port pydam_e | Species: pydam_e |
pydam_e | |||||
Port | pydx_e_port
|
port pydx_e | Species: pydx_e |
pydx_e | |||||
Port | pydxn_e_port
|
port pydxn_e | Species: pydxn_e |
pydxn_e | |||||
Port | pyr_e_port
|
port pyr_e | Species: pyr_e |
pyr_e | |||||
Port | ribflv_e_port
|
port ribflv_e | Species: ribflv_e |
ribflv_e | |||||
Port | spmd_e_port
|
port spmd_e | Species: spmd_e |
spmd_e | |||||
Port | sprm_e_port
|
port sprm_e | Species: sprm_e |
sprm_e | |||||
Port | thm_e_port
|
port thm_e | Species: thm_e |
thm_e | |||||
Port | thmmp_e_port
|
port thmmp_e | Species: thmmp_e |
thmmp_e | |||||
Port | urea_e_port
|
port urea_e | Species: urea_e |
urea_e | |||||
Port | uri_e_port
|
port uri_e | Species: uri_e |
uri_e | |||||
Port | pEX_M_35cgmp_e_port
|
port pEX_M_35cgmp_e | Parameter: pEX_M_35cgmp_e |
pEX_M_35cgmp_e | |||||
Port | pEX_M_3moxtyr_e_port
|
port pEX_M_3moxtyr_e | Parameter: pEX_M_3moxtyr_e |
pEX_M_3moxtyr_e | |||||
Port | pEX_M_4pyrdx_e_port
|
port pEX_M_4pyrdx_e | Parameter: pEX_M_4pyrdx_e |
pEX_M_4pyrdx_e | |||||
Port | pEX_M_5aop_e_port
|
port pEX_M_5aop_e | Parameter: pEX_M_5aop_e |
pEX_M_5aop_e | |||||
Port | pEX_ac_e_port
|
port pEX_ac_e | Parameter: pEX_ac_e |
pEX_ac_e | |||||
Port | pEX_acald_e_port
|
port pEX_acald_e | Parameter: pEX_acald_e |
pEX_acald_e | |||||
Port | pEX_acnam_e_port
|
port pEX_acnam_e | Parameter: pEX_acnam_e |
pEX_acnam_e | |||||
Port | pEX_ade_e_port
|
port pEX_ade_e | Parameter: pEX_ade_e |
pEX_ade_e | |||||
Port | pEX_adn_e_port
|
port pEX_adn_e | Parameter: pEX_adn_e |
pEX_adn_e | |||||
Port | pEX_adrnl_e_port
|
port pEX_adrnl_e | Parameter: pEX_adrnl_e |
pEX_adrnl_e | |||||
Port | pEX_ala__L_e_port
|
port pEX_ala__L_e | Parameter: pEX_ala__L_e |
pEX_ala__L_e | |||||
Port | pEX_arg__L_e_port
|
port pEX_arg__L_e | Parameter: pEX_arg__L_e |
pEX_arg__L_e | |||||
Port | pEX_ascb__L_e_port
|
port pEX_ascb__L_e | Parameter: pEX_ascb__L_e |
pEX_ascb__L_e | |||||
Port | pEX_bilglcur_e_port
|
port pEX_bilglcur_e | Parameter: pEX_bilglcur_e |
pEX_bilglcur_e | |||||
Port | pEX_ca2_e_port
|
port pEX_ca2_e | Parameter: pEX_ca2_e |
pEX_ca2_e | |||||
Port | pEX_camp_e_port
|
port pEX_camp_e | Parameter: pEX_camp_e |
pEX_camp_e | |||||
Port | pEX_chol_e_port
|
port pEX_chol_e | Parameter: pEX_chol_e |
pEX_chol_e | |||||
Port | pEX_cl_e_port
|
port pEX_cl_e | Parameter: pEX_cl_e |
pEX_cl_e | |||||
Port | pEX_co_e_port
|
port pEX_co_e | Parameter: pEX_co_e |
pEX_co_e | |||||
Port | pEX_co2_e_port
|
port pEX_co2_e | Parameter: pEX_co2_e |
pEX_co2_e | |||||
Port | pEX_cys__L_e_port
|
port pEX_cys__L_e | Parameter: pEX_cys__L_e |
pEX_cys__L_e | |||||
Port | pEX_dhdascb_e_port
|
port pEX_dhdascb_e | Parameter: pEX_dhdascb_e |
pEX_dhdascb_e | |||||
Port | pEX_dopa_e_port
|
port pEX_dopa_e | Parameter: pEX_dopa_e |
pEX_dopa_e | |||||
Port | pEX_etha_e_port
|
port pEX_etha_e | Parameter: pEX_etha_e |
pEX_etha_e | |||||
Port | pEX_fe2_e_port
|
port pEX_fe2_e | Parameter: pEX_fe2_e |
pEX_fe2_e | |||||
Port | pEX_fru_e_port
|
port pEX_fru_e | Parameter: pEX_fru_e |
pEX_fru_e | |||||
Port | pEX_fum_e_port
|
port pEX_fum_e | Parameter: pEX_fum_e |
pEX_fum_e | |||||
Port | pEX_gal_e_port
|
port pEX_gal_e | Parameter: pEX_gal_e |
pEX_gal_e | |||||
Port | pEX_gam_e_port
|
port pEX_gam_e | Parameter: pEX_gam_e |
pEX_gam_e | |||||
Port | pEX_glc__D_e_port
|
port pEX_glc__D_e | Parameter: pEX_glc__D_e |
pEX_glc__D_e | |||||
Port | pEX_gln__L_e_port
|
port pEX_gln__L_e | Parameter: pEX_gln__L_e |
pEX_gln__L_e | |||||
Port | pEX_gluala_e_port
|
port pEX_gluala_e | Parameter: pEX_gluala_e |
pEX_gluala_e | |||||
Port | pEX_gly_e_port
|
port pEX_gly_e | Parameter: pEX_gly_e |
pEX_gly_e | |||||
Port | pEX_glyc_e_port
|
port pEX_glyc_e | Parameter: pEX_glyc_e |
pEX_glyc_e | |||||
Port | pEX_gthox_e_port
|
port pEX_gthox_e | Parameter: pEX_gthox_e |
pEX_gthox_e | |||||
Port | pEX_h_e_port
|
port pEX_h_e | Parameter: pEX_h_e |
pEX_h_e | |||||
Port | pEX_h2o_e_port
|
port pEX_h2o_e | Parameter: pEX_h2o_e |
pEX_h2o_e | |||||
Port | pEX_h2o2_e_port
|
port pEX_h2o2_e | Parameter: pEX_h2o2_e |
pEX_h2o2_e | |||||
Port | pEX_hco3_e_port
|
port pEX_hco3_e | Parameter: pEX_hco3_e |
pEX_hco3_e | |||||
Port | pEX_hcys__L_e_port
|
port pEX_hcys__L_e | Parameter: pEX_hcys__L_e |
pEX_hcys__L_e | |||||
Port | pEX_hdca_e_port
|
port pEX_hdca_e | Parameter: pEX_hdca_e |
pEX_hdca_e | |||||
Port | pEX_hxan_e_port
|
port pEX_hxan_e | Parameter: pEX_hxan_e |
pEX_hxan_e | |||||
Port | pEX_ins_e_port
|
port pEX_ins_e | Parameter: pEX_ins_e |
pEX_ins_e | |||||
Port | pEX_k_e_port
|
port pEX_k_e | Parameter: pEX_k_e |
pEX_k_e | |||||
Port | pEX_lac__D_e_port
|
port pEX_lac__D_e | Parameter: pEX_lac__D_e |
pEX_lac__D_e | |||||
Port | pEX_lac__L_e_port
|
port pEX_lac__L_e | Parameter: pEX_lac__L_e |
pEX_lac__L_e | |||||
Port | pEX_leuktrA4_e_port
|
port pEX_leuktrA4_e | Parameter: pEX_leuktrA4_e |
pEX_leuktrA4_e | |||||
Port | pEX_leuktrB4_e_port
|
port pEX_leuktrB4_e | Parameter: pEX_leuktrB4_e |
pEX_leuktrB4_e | |||||
Port | pEX_lnlc_e_port
|
port pEX_lnlc_e | Parameter: pEX_lnlc_e |
pEX_lnlc_e | |||||
Port | pEX_mal__L_e_port
|
port pEX_mal__L_e | Parameter: pEX_mal__L_e |
pEX_mal__L_e | |||||
Port | pEX_man_e_port
|
port pEX_man_e | Parameter: pEX_man_e |
pEX_man_e | |||||
Port | pEX_mepi_e_port
|
port pEX_mepi_e | Parameter: pEX_mepi_e |
pEX_mepi_e | |||||
Port | pEX_met__L_e_port
|
port pEX_met__L_e | Parameter: pEX_met__L_e |
pEX_met__L_e | |||||
Port | pEX_na1_e_port
|
port pEX_na1_e | Parameter: pEX_na1_e |
pEX_na1_e | |||||
Port | pEX_nac_e_port
|
port pEX_nac_e | Parameter: pEX_nac_e |
pEX_nac_e | |||||
Port | pEX_ncam_e_port
|
port pEX_ncam_e | Parameter: pEX_ncam_e |
pEX_ncam_e | |||||
Port | pEX_nh4_e_port
|
port pEX_nh4_e | Parameter: pEX_nh4_e |
pEX_nh4_e | |||||
Port | pEX_normete__L_e_port
|
port pEX_normete__L_e | Parameter: pEX_normete__L_e |
pEX_normete__L_e | |||||
Port | pEX_nrpphr_e_port
|
port pEX_nrpphr_e | Parameter: pEX_nrpphr_e |
pEX_nrpphr_e | |||||
Port | pEX_o2_e_port
|
port pEX_o2_e | Parameter: pEX_o2_e |
pEX_o2_e | |||||
Port | pEX_ocdcea_e_port
|
port pEX_ocdcea_e | Parameter: pEX_ocdcea_e |
pEX_ocdcea_e | |||||
Port | pEX_orot_e_port
|
port pEX_orot_e | Parameter: pEX_orot_e |
pEX_orot_e | |||||
Port | pEX_phe__L_e_port
|
port pEX_phe__L_e | Parameter: pEX_phe__L_e |
pEX_phe__L_e | |||||
Port | pEX_pi_e_port
|
port pEX_pi_e | Parameter: pEX_pi_e |
pEX_pi_e | |||||
Port | pEX_ptrc_e_port
|
port pEX_ptrc_e | Parameter: pEX_ptrc_e |
pEX_ptrc_e | |||||
Port | pEX_pydam_e_port
|
port pEX_pydam_e | Parameter: pEX_pydam_e |
pEX_pydam_e | |||||
Port | pEX_pydx_e_port
|
port pEX_pydx_e | Parameter: pEX_pydx_e |
pEX_pydx_e | |||||
Port | pEX_pydxn_e_port
|
port pEX_pydxn_e | Parameter: pEX_pydxn_e |
pEX_pydxn_e | |||||
Port | pEX_pyr_e_port
|
port pEX_pyr_e | Parameter: pEX_pyr_e |
pEX_pyr_e | |||||
Port | pEX_ribflv_e_port
|
port pEX_ribflv_e | Parameter: pEX_ribflv_e |
pEX_ribflv_e | |||||
Port | pEX_spmd_e_port
|
port pEX_spmd_e | Parameter: pEX_spmd_e |
pEX_spmd_e | |||||
Port | pEX_sprm_e_port
|
port pEX_sprm_e | Parameter: pEX_sprm_e |
pEX_sprm_e | |||||
Port | pEX_thm_e_port
|
port pEX_thm_e | Parameter: pEX_thm_e |
pEX_thm_e | |||||
Port | pEX_thmmp_e_port
|
port pEX_thmmp_e | Parameter: pEX_thmmp_e |
pEX_thmmp_e | |||||
Port | pEX_urea_e_port
|
port pEX_urea_e | Parameter: pEX_urea_e |
pEX_urea_e | |||||
Port | pEX_uri_e_port
|
port pEX_uri_e | Parameter: pEX_uri_e |
pEX_uri_e |
type | UnitDefinitions [12] | name | units | sbo | cvterm |
---|---|---|---|---|---|
UnitDefinition | h
|
||||
UnitDefinition | g
|
||||
UnitDefinition | m
|
||||
UnitDefinition | m2
|
||||
UnitDefinition | l
|
||||
UnitDefinition | mmol
|
||||
UnitDefinition | per_h
|
||||
UnitDefinition | mmol_per_h
|
||||
UnitDefinition | mmol_per_l
|
||||
UnitDefinition | l_per_mmol
|
||||
UnitDefinition | g_per_l
|
||||
UnitDefinition | g_per_mmol
|
type | Compartments [1] | name | size | constant | spatial dimensions | units | derived units | sbo | cvterm |
---|---|---|---|---|---|---|---|---|---|
Compartment | blood
|
blood | 1.0 | T | 3 | l |
type | Species [76] | name | compartment | hasOnlySubstanceUnits | boundaryCondition | constant | initialAmount | initialConcentration | conversionFactor | units | substanceUnits | derivedUnits | sbo | cvterm |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Species | M_35cgmp_e
|
3',5'-Cyclic GMP | blood | F | F | F | 1.0 | mmol | mmol | |||||
Species | M_3moxtyr_e
|
3moxtyr c | blood | F | F | F | 1.0 | mmol | mmol | |||||
Species | M_4pyrdx_e
|
4pyrdx c | blood | F | F | F | 1.0 | mmol | mmol | |||||
Species | M_5aop_e
|
5-Amino-4-oxopentanoate | blood | F | F | F | 1.0 | mmol | mmol | |||||
Species | ac_e
|
Acetate | blood | F | F | F | 1.0 | mmol | mmol | |||||
Species | acald_e
|
Acetaldehyde | blood | F | F | F | 1.0 | mmol | mmol | |||||
Species | acnam_e
|
N-Acetylneuraminate | blood | F | F | F | 1.0 | mmol | mmol | |||||
Species | ade_e
|
Adenine | blood | F | F | F | 1.0 | mmol | mmol | |||||
Species | adn_e
|
Adenosine | blood | F | F | F | 1.0 | mmol | mmol | |||||
Species | adrnl_e
|
Adrnl c | blood | F | F | F | 1.0 | mmol | mmol | |||||
Species | ala__L_e
|
L-Alanine | blood | F | F | F | 1.0 | mmol | mmol | |||||
Species | arg__L_e
|
L-Arginine | blood | F | F | F | 1.0 | mmol | mmol | |||||
Species | ascb__L_e
|
L-Ascorbate | blood | F | F | F | 1.0 | mmol | mmol | |||||
Species | bilglcur_e
|
Bilglcur c | blood | F | F | F | 1.0 | mmol | mmol | |||||
Species | ca2_e
|
Calcium | blood | F | F | F | 1.0 | mmol | mmol | |||||
Species | camp_e
|
CAMP | blood | F | F | F | 1.0 | mmol | mmol | |||||
Species | chol_e
|
Choline | blood | F | F | F | 1.0 | mmol | mmol | |||||
Species | cl_e
|
Chloride | blood | F | F | F | 1.0 | mmol | mmol | |||||
Species | co_e
|
Carbon monoxide | blood | F | F | F | 1.0 | mmol | mmol | |||||
Species | co2_e
|
CO2 | blood | F | F | F | 1.0 | mmol | mmol | |||||
Species | cys__L_e
|
L-Cysteine | blood | F | F | F | 1.0 | mmol | mmol | |||||
Species | dhdascb_e
|
Dhdascb c | blood | F | F | F | 1.0 | mmol | mmol | |||||
Species | dopa_e
|
Dopamine | blood | F | F | F | 1.0 | mmol | mmol | |||||
Species | etha_e
|
Ethanolamine | blood | F | F | F | 1.0 | mmol | mmol | |||||
Species | fe2_e
|
Fe2+ | blood | F | F | F | 1.0 | mmol | mmol | |||||
Species | fru_e
|
D-Fructose | blood | F | F | F | 1.0 | mmol | mmol | |||||
Species | fum_e
|
Fumarate | blood | F | F | F | 1.0 | mmol | mmol | |||||
Species | gal_e
|
D-Galactose | blood | F | F | F | 1.0 | mmol | mmol | |||||
Species | gam_e
|
D-Glucosamine | blood | F | F | F | 1.0 | mmol | mmol | |||||
Species | glc__D_e
|
D-Glucose | blood | F | F | F | 1.0 | mmol | mmol | |||||
Species | gln__L_e
|
L-Glutamine | blood | F | F | F | 1.0 | mmol | mmol | |||||
Species | gluala_e
|
5 L Glutamyl L alanine C8H13N2O5 | blood | F | F | F | 1.0 | mmol | mmol | |||||
Species | gly_e
|
Glycine | blood | F | F | F | 1.0 | mmol | mmol | |||||
Species | glyc_e
|
Glycerol | blood | F | F | F | 1.0 | mmol | mmol | |||||
Species | gthox_e
|
Oxidized glutathione | blood | F | F | F | 1.0 | mmol | mmol | |||||
Species | h_e
|
H+ | blood | F | F | F | 1.0 | mmol | mmol | |||||
Species | h2o_e
|
H2O | blood | F | F | F | 1.0 | mmol | mmol | |||||
Species | h2o2_e
|
Hydrogen peroxide | blood | F | F | F | 1.0 | mmol | mmol | |||||
Species | hco3_e
|
Bicarbonate | blood | F | F | F | 1.0 | mmol | mmol | |||||
Species | hcys__L_e
|
L-Homocysteine | blood | F | F | F | 1.0 | mmol | mmol | |||||
Species | hdca_e
|
Hexadecanoate (n-C16:0) | blood | F | F | F | 1.0 | mmol | mmol | |||||
Species | hxan_e
|
Hypoxanthine | blood | F | F | F | 1.0 | mmol | mmol | |||||
Species | ins_e
|
Inosine | blood | F | F | F | 1.0 | mmol | mmol | |||||
Species | k_e
|
Potassium | blood | F | F | F | 1.0 | mmol | mmol | |||||
Species | lac__D_e
|
D-Lactate | blood | F | F | F | 1.0 | mmol | mmol | |||||
Species | lac__L_e
|
L-Lactate | blood | F | F | F | 1.0 | mmol | mmol | |||||
Species | leuktrA4_e
|
LeuktrA4 c | blood | F | F | F | 1.0 | mmol | mmol | |||||
Species | leuktrB4_e
|
LeuktrB4 c | blood | F | F | F | 1.0 | mmol | mmol | |||||
Species | lnlc_e
|
Lnlc c | blood | F | F | F | 1.0 | mmol | mmol | |||||
Species | mal__L_e
|
L-Malate | blood | F | F | F | 1.0 | mmol | mmol | |||||
Species | man_e
|
D-Mannose | blood | F | F | F | 1.0 | mmol | mmol | |||||
Species | mepi_e
|
Mepi c | blood | F | F | F | 1.0 | mmol | mmol | |||||
Species | met__L_e
|
L-Methionine | blood | F | F | F | 1.0 | mmol | mmol | |||||
Species | na1_e
|
Sodium | blood | F | F | F | 1.0 | mmol | mmol | |||||
Species | nac_e
|
Nicotinate | blood | F | F | F | 1.0 | mmol | mmol | |||||
Species | ncam_e
|
Nicotinamide | blood | F | F | F | 1.0 | mmol | mmol | |||||
Species | nh4_e
|
Ammonium | blood | F | F | F | 1.0 | mmol | mmol | |||||
Species | normete__L_e
|
Normete L c | blood | F | F | F | 1.0 | mmol | mmol | |||||
Species | nrpphr_e
|
Nrpphr c | blood | F | F | F | 1.0 | mmol | mmol | |||||
Species | o2_e
|
O2 | blood | F | F | F | 1.0 | mmol | mmol | |||||
Species | ocdcea_e
|
Octadecenoate (n-C18:1) | blood | F | F | F | 1.0 | mmol | mmol | |||||
Species | orot_e
|
Orotate | blood | F | F | F | 1.0 | mmol | mmol | |||||
Species | phe__L_e
|
L-Phenylalanine | blood | F | F | F | 1.0 | mmol | mmol | |||||
Species | pi_e
|
Phosphate | blood | F | F | F | 1.0 | mmol | mmol | |||||
Species | ptrc_e
|
Putrescine | blood | F | F | F | 1.0 | mmol | mmol | |||||
Species | pydam_e
|
Pyridoxamine | blood | F | F | F | 1.0 | mmol | mmol | |||||
Species | pydx_e
|
Pyridoxal | blood | F | F | F | 1.0 | mmol | mmol | |||||
Species | pydxn_e
|
Pyridoxine | blood | F | F | F | 1.0 | mmol | mmol | |||||
Species | pyr_e
|
Pyruvate | blood | F | F | F | 1.0 | mmol | mmol | |||||
Species | ribflv_e
|
Riboflavin | blood | F | F | F | 1.0 | mmol | mmol | |||||
Species | spmd_e
|
Spermidine | blood | F | F | F | 1.0 | mmol | mmol | |||||
Species | sprm_e
|
Spermine C10H30N4 | blood | F | F | F | 1.0 | mmol | mmol | |||||
Species | thm_e
|
Thiamin | blood | F | F | F | 1.0 | mmol | mmol | |||||
Species | thmmp_e
|
Thiamin monophosphate | blood | F | F | F | 1.0 | mmol | mmol | |||||
Species | urea_e
|
Urea | blood | F | F | F | 1.0 | mmol | mmol | |||||
Species | uri_e
|
Uridine | blood | F | F | F | 1.0 | mmol | mmol |
type | Parameters [76] | name | constant | value | unit | derived unit | sbo | cvterm |
---|---|---|---|---|---|---|---|---|
Parameter | pEX_M_35cgmp_e
|
T | 1.0 | mmol_per_h | ||||
Parameter | pEX_M_3moxtyr_e
|
T | 1.0 | mmol_per_h | ||||
Parameter | pEX_M_4pyrdx_e
|
T | 1.0 | mmol_per_h | ||||
Parameter | pEX_M_5aop_e
|
T | 1.0 | mmol_per_h | ||||
Parameter | pEX_ac_e
|
T | 1.0 | mmol_per_h | ||||
Parameter | pEX_acald_e
|
T | 1.0 | mmol_per_h | ||||
Parameter | pEX_acnam_e
|
T | 1.0 | mmol_per_h | ||||
Parameter | pEX_ade_e
|
T | 1.0 | mmol_per_h | ||||
Parameter | pEX_adn_e
|
T | 1.0 | mmol_per_h | ||||
Parameter | pEX_adrnl_e
|
T | 1.0 | mmol_per_h | ||||
Parameter | pEX_ala__L_e
|
T | 1.0 | mmol_per_h | ||||
Parameter | pEX_arg__L_e
|
T | 1.0 | mmol_per_h | ||||
Parameter | pEX_ascb__L_e
|
T | 1.0 | mmol_per_h | ||||
Parameter | pEX_bilglcur_e
|
T | 1.0 | mmol_per_h | ||||
Parameter | pEX_ca2_e
|
T | 1.0 | mmol_per_h | ||||
Parameter | pEX_camp_e
|
T | 1.0 | mmol_per_h | ||||
Parameter | pEX_chol_e
|
T | 1.0 | mmol_per_h | ||||
Parameter | pEX_cl_e
|
T | 1.0 | mmol_per_h | ||||
Parameter | pEX_co_e
|
T | 1.0 | mmol_per_h | ||||
Parameter | pEX_co2_e
|
T | 1.0 | mmol_per_h | ||||
Parameter | pEX_cys__L_e
|
T | 1.0 | mmol_per_h | ||||
Parameter | pEX_dhdascb_e
|
T | 1.0 | mmol_per_h | ||||
Parameter | pEX_dopa_e
|
T | 1.0 | mmol_per_h | ||||
Parameter | pEX_etha_e
|
T | 1.0 | mmol_per_h | ||||
Parameter | pEX_fe2_e
|
T | 1.0 | mmol_per_h | ||||
Parameter | pEX_fru_e
|
T | 1.0 | mmol_per_h | ||||
Parameter | pEX_fum_e
|
T | 1.0 | mmol_per_h | ||||
Parameter | pEX_gal_e
|
T | 1.0 | mmol_per_h | ||||
Parameter | pEX_gam_e
|
T | 1.0 | mmol_per_h | ||||
Parameter | pEX_glc__D_e
|
T | 1.0 | mmol_per_h | ||||
Parameter | pEX_gln__L_e
|
T | 1.0 | mmol_per_h | ||||
Parameter | pEX_gluala_e
|
T | 1.0 | mmol_per_h | ||||
Parameter | pEX_gly_e
|
T | 1.0 | mmol_per_h | ||||
Parameter | pEX_glyc_e
|
T | 1.0 | mmol_per_h | ||||
Parameter | pEX_gthox_e
|
T | 1.0 | mmol_per_h | ||||
Parameter | pEX_h_e
|
T | 1.0 | mmol_per_h | ||||
Parameter | pEX_h2o_e
|
T | 1.0 | mmol_per_h | ||||
Parameter | pEX_h2o2_e
|
T | 1.0 | mmol_per_h | ||||
Parameter | pEX_hco3_e
|
T | 1.0 | mmol_per_h | ||||
Parameter | pEX_hcys__L_e
|
T | 1.0 | mmol_per_h | ||||
Parameter | pEX_hdca_e
|
T | 1.0 | mmol_per_h | ||||
Parameter | pEX_hxan_e
|
T | 1.0 | mmol_per_h | ||||
Parameter | pEX_ins_e
|
T | 1.0 | mmol_per_h | ||||
Parameter | pEX_k_e
|
T | 1.0 | mmol_per_h | ||||
Parameter | pEX_lac__D_e
|
T | 1.0 | mmol_per_h | ||||
Parameter | pEX_lac__L_e
|
T | 1.0 | mmol_per_h | ||||
Parameter | pEX_leuktrA4_e
|
T | 1.0 | mmol_per_h | ||||
Parameter | pEX_leuktrB4_e
|
T | 1.0 | mmol_per_h | ||||
Parameter | pEX_lnlc_e
|
T | 1.0 | mmol_per_h | ||||
Parameter | pEX_mal__L_e
|
T | 1.0 | mmol_per_h | ||||
Parameter | pEX_man_e
|
T | 1.0 | mmol_per_h | ||||
Parameter | pEX_mepi_e
|
T | 1.0 | mmol_per_h | ||||
Parameter | pEX_met__L_e
|
T | 1.0 | mmol_per_h | ||||
Parameter | pEX_na1_e
|
T | 1.0 | mmol_per_h | ||||
Parameter | pEX_nac_e
|
T | 1.0 | mmol_per_h | ||||
Parameter | pEX_ncam_e
|
T | 1.0 | mmol_per_h | ||||
Parameter | pEX_nh4_e
|
T | 1.0 | mmol_per_h | ||||
Parameter | pEX_normete__L_e
|
T | 1.0 | mmol_per_h | ||||
Parameter | pEX_nrpphr_e
|
T | 1.0 | mmol_per_h | ||||
Parameter | pEX_o2_e
|
T | 1.0 | mmol_per_h | ||||
Parameter | pEX_ocdcea_e
|
T | 1.0 | mmol_per_h | ||||
Parameter | pEX_orot_e
|
T | 1.0 | mmol_per_h | ||||
Parameter | pEX_phe__L_e
|
T | 1.0 | mmol_per_h | ||||
Parameter | pEX_pi_e
|
T | 1.0 | mmol_per_h | ||||
Parameter | pEX_ptrc_e
|
T | 1.0 | mmol_per_h | ||||
Parameter | pEX_pydam_e
|
T | 1.0 | mmol_per_h | ||||
Parameter | pEX_pydx_e
|
T | 1.0 | mmol_per_h | ||||
Parameter | pEX_pydxn_e
|
T | 1.0 | mmol_per_h | ||||
Parameter | pEX_pyr_e
|
T | 1.0 | mmol_per_h | ||||
Parameter | pEX_ribflv_e
|
T | 1.0 | mmol_per_h | ||||
Parameter | pEX_spmd_e
|
T | 1.0 | mmol_per_h | ||||
Parameter | pEX_sprm_e
|
T | 1.0 | mmol_per_h | ||||
Parameter | pEX_thm_e
|
T | 1.0 | mmol_per_h | ||||
Parameter | pEX_thmmp_e
|
T | 1.0 | mmol_per_h | ||||
Parameter | pEX_urea_e
|
T | 1.0 | mmol_per_h | ||||
Parameter | pEX_uri_e
|
T | 1.0 | mmol_per_h |
type | Reactions [76] | name | equation | modifiers | kinetic law | derived units | sbo | cvterm | |
---|---|---|---|---|---|---|---|---|---|
Reaction | update_M_35cgmp_e
|
⇆ | M_35cgmp_e ⇆ | ||||||
Reaction | update_M_3moxtyr_e
|
⇆ | M_3moxtyr_e ⇆ | ||||||
Reaction | update_M_4pyrdx_e
|
⇆ | M_4pyrdx_e ⇆ | ||||||
Reaction | update_M_5aop_e
|
⇆ | M_5aop_e ⇆ | ||||||
Reaction | update_ac_e
|
⇆ | ac_e ⇆ | ||||||
Reaction | update_acald_e
|
⇆ | acald_e ⇆ | ||||||
Reaction | update_acnam_e
|
⇆ | acnam_e ⇆ | ||||||
Reaction | update_ade_e
|
⇆ | ade_e ⇆ | ||||||
Reaction | update_adn_e
|
⇆ | adn_e ⇆ | ||||||
Reaction | update_adrnl_e
|
⇆ | adrnl_e ⇆ | ||||||
Reaction | update_ala__L_e
|
⇆ | ala__L_e ⇆ | ||||||
Reaction | update_arg__L_e
|
⇆ | arg__L_e ⇆ | ||||||
Reaction | update_ascb__L_e
|
⇆ | ascb__L_e ⇆ | ||||||
Reaction | update_bilglcur_e
|
⇆ | bilglcur_e ⇆ | ||||||
Reaction | update_ca2_e
|
⇆ | ca2_e ⇆ | ||||||
Reaction | update_camp_e
|
⇆ | camp_e ⇆ | ||||||
Reaction | update_chol_e
|
⇆ | chol_e ⇆ | ||||||
Reaction | update_cl_e
|
⇆ | cl_e ⇆ | ||||||
Reaction | update_co_e
|
⇆ | co_e ⇆ | ||||||
Reaction | update_co2_e
|
⇆ | co2_e ⇆ | ||||||
Reaction | update_cys__L_e
|
⇆ | cys__L_e ⇆ | ||||||
Reaction | update_dhdascb_e
|
⇆ | dhdascb_e ⇆ | ||||||
Reaction | update_dopa_e
|
⇆ | dopa_e ⇆ | ||||||
Reaction | update_etha_e
|
⇆ | etha_e ⇆ | ||||||
Reaction | update_fe2_e
|
⇆ | fe2_e ⇆ | ||||||
Reaction | update_fru_e
|
⇆ | fru_e ⇆ | ||||||
Reaction | update_fum_e
|
⇆ | fum_e ⇆ | ||||||
Reaction | update_gal_e
|
⇆ | gal_e ⇆ | ||||||
Reaction | update_gam_e
|
⇆ | gam_e ⇆ | ||||||
Reaction | update_glc__D_e
|
⇆ | glc__D_e ⇆ | ||||||
Reaction | update_gln__L_e
|
⇆ | gln__L_e ⇆ | ||||||
Reaction | update_gluala_e
|
⇆ | gluala_e ⇆ | ||||||
Reaction | update_gly_e
|
⇆ | gly_e ⇆ | ||||||
Reaction | update_glyc_e
|
⇆ | glyc_e ⇆ | ||||||
Reaction | update_gthox_e
|
⇆ | gthox_e ⇆ | ||||||
Reaction | update_h_e
|
⇆ | h_e ⇆ | ||||||
Reaction | update_h2o_e
|
⇆ | h2o_e ⇆ | ||||||
Reaction | update_h2o2_e
|
⇆ | h2o2_e ⇆ | ||||||
Reaction | update_hco3_e
|
⇆ | hco3_e ⇆ | ||||||
Reaction | update_hcys__L_e
|
⇆ | hcys__L_e ⇆ | ||||||
Reaction | update_hdca_e
|
⇆ | hdca_e ⇆ | ||||||
Reaction | update_hxan_e
|
⇆ | hxan_e ⇆ | ||||||
Reaction | update_ins_e
|
⇆ | ins_e ⇆ | ||||||
Reaction | update_k_e
|
⇆ | k_e ⇆ | ||||||
Reaction | update_lac__D_e
|
⇆ | lac__D_e ⇆ | ||||||
Reaction | update_lac__L_e
|
⇆ | lac__L_e ⇆ | ||||||
Reaction | update_leuktrA4_e
|
⇆ | leuktrA4_e ⇆ | ||||||
Reaction | update_leuktrB4_e
|
⇆ | leuktrB4_e ⇆ | ||||||
Reaction | update_lnlc_e
|
⇆ | lnlc_e ⇆ | ||||||
Reaction | update_mal__L_e
|
⇆ | mal__L_e ⇆ | ||||||
Reaction | update_man_e
|
⇆ | man_e ⇆ | ||||||
Reaction | update_mepi_e
|
⇆ | mepi_e ⇆ | ||||||
Reaction | update_met__L_e
|
⇆ | met__L_e ⇆ | ||||||
Reaction | update_na1_e
|
⇆ | na1_e ⇆ | ||||||
Reaction | update_nac_e
|
⇆ | nac_e ⇆ | ||||||
Reaction | update_ncam_e
|
⇆ | ncam_e ⇆ | ||||||
Reaction | update_nh4_e
|
⇆ | nh4_e ⇆ | ||||||
Reaction | update_normete__L_e
|
⇆ | normete__L_e ⇆ | ||||||
Reaction | update_nrpphr_e
|
⇆ | nrpphr_e ⇆ | ||||||
Reaction | update_o2_e
|
⇆ | o2_e ⇆ | ||||||
Reaction | update_ocdcea_e
|
⇆ | ocdcea_e ⇆ | ||||||
Reaction | update_orot_e
|
⇆ | orot_e ⇆ | ||||||
Reaction | update_phe__L_e
|
⇆ | phe__L_e ⇆ | ||||||
Reaction | update_pi_e
|
⇆ | pi_e ⇆ | ||||||
Reaction | update_ptrc_e
|
⇆ | ptrc_e ⇆ | ||||||
Reaction | update_pydam_e
|
⇆ | pydam_e ⇆ | ||||||
Reaction | update_pydx_e
|
⇆ | pydx_e ⇆ | ||||||
Reaction | update_pydxn_e
|
⇆ | pydxn_e ⇆ | ||||||
Reaction | update_pyr_e
|
⇆ | pyr_e ⇆ | ||||||
Reaction | update_ribflv_e
|
⇆ | ribflv_e ⇆ | ||||||
Reaction | update_spmd_e
|
⇆ | spmd_e ⇆ | ||||||
Reaction | update_sprm_e
|
⇆ | sprm_e ⇆ | ||||||
Reaction | update_thm_e
|
⇆ | thm_e ⇆ | ||||||
Reaction | update_thmmp_e
|
⇆ | thmmp_e ⇆ | ||||||
Reaction | update_urea_e
|
⇆ | urea_e ⇆ | ||||||
Reaction | update_uri_e
|
⇆ | uri_e ⇆ |