E.coli core DFBA model

Model version: 10

TOP model

Main comp DFBA model by combining fba, update and bounds model with additional kinetics in the top model.

Description

This is a metabolism model of Escherichia coli str. K-12 substr. MG1655 in SBML format.

The content of this model has been carefully created in a manual research effort. This file has been exported from the software COBRApy and further processed with the JSBML-based ModelPolisher application.
This file has been produced by the Systems Biology Research Group using BiGG Models knowledge-base version of Nov 21, 2016, where it is currently hosted and identified by: e_coli_core.

Terms of use

Copyright © 2016 The Regents of the University of California.

Redistribution and use of any part of this model from BiGG Models knowledge-base, with or without modification, are permitted provided that the following conditions are met:

  1. Redistributions of this SBML file must retain the above copyright notice, this list of conditions and the following disclaimer.
  2. Redistributions in a different form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution.
This model is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

For specific licensing terms about this particular model and regulations of commercial use, see this model in BiGG Models knowledge-base.

References

When using content from BiGG Models knowledge-base in your research works, please cite
King ZA, Lu JS, Dräger A, Miller PC, Federowicz S, Lerman JA, Ebrahim A, Palsson BO, and Lewis NE. (2015).
BiGG Models: A platform for integrating, standardizing, and sharing genome-scale models. Nucl Acids Res. doi:10.1093/nar/gkv1049

Model : ecoli_top

Creator
Matthias, Koenig, Humboldt University Berlin, konigmatt@googlemail.com
Created: 2017-11-11 19:47
Modified: 2017-11-11 19:47

id ecoli_top meta_ecoli_top
nameecoli (TOP)
timeh
substancemmol
extentmmol
volumel
aream2
lengthm
Access SBML model  L3V1 comp-V1

ModelDefinitions [3] name type sbo cvterm
ecoli_fba ecoli_fba ExternalModelDefinition (source=ecoli_fba.xml)
ecoli_bounds ecoli_bounds ExternalModelDefinition (source=ecoli_bounds.xml)
ecoli_update ecoli_update ExternalModelDefinition (source=ecoli_update.xml)

Submodels [3] name model ref deletions time conversion extent conversion sbo cvterm
fba ecoli_fba
bounds ecoli_bounds
update ecoli_update

UnitDefinitions [13] name units sbo cvterm
h
ReplacedElement bounds:unitRef=h
ReplacedElement fba:unitRef=h
ReplacedElement update:unitRef=h
3600 s
g
ReplacedElement bounds:unitRef=g
ReplacedElement fba:unitRef=g
ReplacedElement update:unitRef=g
g
m
ReplacedElement bounds:unitRef=m
ReplacedElement fba:unitRef=m
ReplacedElement update:unitRef=m
m
m2
ReplacedElement bounds:unitRef=m2
ReplacedElement fba:unitRef=m2
ReplacedElement update:unitRef=m2
m 2
l
ReplacedElement bounds:unitRef=l
ReplacedElement fba:unitRef=l
ReplacedElement update:unitRef=l
litre
mmol
ReplacedElement bounds:unitRef=mmol
ReplacedElement fba:unitRef=mmol
ReplacedElement update:unitRef=mmol
10 3 mole
per_h
ReplacedElement bounds:unitRef=per_h
ReplacedElement fba:unitRef=per_h
ReplacedElement update:unitRef=per_h
1 3600 s
mmol_per_h
ReplacedElement bounds:unitRef=mmol_per_h
ReplacedElement fba:unitRef=mmol_per_h
ReplacedElement update:unitRef=mmol_per_h
10 3 mole 3600 s
mmol_per_hg
ReplacedElement bounds:unitRef=mmol_per_hg
ReplacedElement fba:unitRef=mmol_per_hg
ReplacedElement update:unitRef=mmol_per_hg
10 3 mole g 3600 s
mmol_per_l
ReplacedElement bounds:unitRef=mmol_per_l
ReplacedElement fba:unitRef=mmol_per_l
ReplacedElement update:unitRef=mmol_per_l
10 3 mole litre
l_per_mmol
ReplacedElement bounds:unitRef=l_per_mmol
ReplacedElement fba:unitRef=l_per_mmol
ReplacedElement update:unitRef=l_per_mmol
litre 10 3 mole
g_per_l
ReplacedElement bounds:unitRef=g_per_l
ReplacedElement fba:unitRef=g_per_l
ReplacedElement update:unitRef=g_per_l
g litre
g_per_mmol
ReplacedElement bounds:unitRef=g_per_mmol
ReplacedElement fba:unitRef=g_per_mmol
ReplacedElement update:unitRef=g_per_mmol
g 10 3 mole

Compartments [1] name size constant spatial dimensions units derived units sbo cvterm
bioreactor
ReplacedElement update:portRef=bioreactor_port
ReplacedElement bounds:portRef=bioreactor_port
bioreactor 1.0 3 l litre

Species [22] name compartment boundary condition constant initial amount initial concentration conversion factor units substance units derived units sbo cvterm
for_e
ReplacedElement update:portRef=for_e_port
ReplacedElement bounds:portRef=for_e_port
Formate bioreactor 1.0 mmol mmol 10 3 mole litre
fru_e
ReplacedElement update:portRef=fru_e_port
ReplacedElement bounds:portRef=fru_e_port
D-Fructose bioreactor 1.0 mmol mmol 10 3 mole litre
h2o_e
ReplacedElement update:portRef=h2o_e_port
ReplacedElement bounds:portRef=h2o_e_port
H2O bioreactor 20.0 mmol mmol 10 3 mole litre
akg_e
ReplacedElement update:portRef=akg_e_port
ReplacedElement bounds:portRef=akg_e_port
2-Oxoglutarate bioreactor 1.0 mmol mmol 10 3 mole litre
pyr_e
ReplacedElement update:portRef=pyr_e_port
ReplacedElement bounds:portRef=pyr_e_port
Pyruvate bioreactor 1.0 mmol mmol 10 3 mole litre
glc__D_e
ReplacedElement update:portRef=glc__D_e_port
ReplacedElement bounds:portRef=glc__D_e_port
D-Glucose bioreactor 20.0 mmol mmol 10 3 mole litre
fum_e
ReplacedElement update:portRef=fum_e_port
ReplacedElement bounds:portRef=fum_e_port
Fumarate bioreactor 1.0 mmol mmol 10 3 mole litre
X
ReplacedElement update:portRef=X_port
ReplacedElement bounds:portRef=X_port
biomass bioreactor 0.001 mmol mmol 10 3 mole litre
pi_e
ReplacedElement update:portRef=pi_e_port
ReplacedElement bounds:portRef=pi_e_port
Phosphate bioreactor 1.0 mmol mmol 10 3 mole litre
lac__D_e
ReplacedElement update:portRef=lac__D_e_port
ReplacedElement bounds:portRef=lac__D_e_port
D-Lactate bioreactor 1.0 mmol mmol 10 3 mole litre
gln__L_e
ReplacedElement update:portRef=gln__L_e_port
ReplacedElement bounds:portRef=gln__L_e_port
L-Glutamine bioreactor 10.0 mmol mmol 10 3 mole litre
acald_e
ReplacedElement update:portRef=acald_e_port
ReplacedElement bounds:portRef=acald_e_port
Acetaldehyde bioreactor 1.0 mmol mmol 10 3 mole litre
etoh_e
ReplacedElement update:portRef=etoh_e_port
ReplacedElement bounds:portRef=etoh_e_port
Ethanol bioreactor 1.0 mmol mmol 10 3 mole litre
ac_e
ReplacedElement update:portRef=ac_e_port
ReplacedElement bounds:portRef=ac_e_port
Acetate bioreactor 1.0 mmol mmol 10 3 mole litre
succ_e
ReplacedElement update:portRef=succ_e_port
ReplacedElement bounds:portRef=succ_e_port
Succinate bioreactor 1.0 mmol mmol 10 3 mole litre
o2_e
ReplacedElement update:portRef=o2_e_port
ReplacedElement bounds:portRef=o2_e_port
O2 bioreactor 1.0 mmol mmol 10 3 mole litre
mal__L_e
ReplacedElement update:portRef=mal__L_e_port
ReplacedElement bounds:portRef=mal__L_e_port
L-Malate bioreactor 1.0 mmol mmol 10 3 mole litre
h_e
ReplacedElement update:portRef=h_e_port
ReplacedElement bounds:portRef=h_e_port
H+ bioreactor 1.0 mmol mmol 10 3 mole litre
co2_e
ReplacedElement update:portRef=co2_e_port
ReplacedElement bounds:portRef=co2_e_port
CO2 bioreactor 1.0 mmol mmol 10 3 mole litre
nh4_e
ReplacedElement update:portRef=nh4_e_port
ReplacedElement bounds:portRef=nh4_e_port
Ammonium bioreactor 1.0 mmol mmol 10 3 mole litre
glu__L_e
ReplacedElement update:portRef=glu__L_e_port
ReplacedElement bounds:portRef=glu__L_e_port
L-Glutamate bioreactor 1.0 mmol mmol 10 3 mole litre
dummy_S dummy_S bioreactor 0.0 mmol mmol 10 3 mole litre

Parameters [64] name constant value unit derived unit sbo cvterm
dt
ReplacedElement bounds:portRef=dt_port
0.1 h 3600 s
lb_EX_for_e
ReplacedElement fba:portRef=lb_EX_for_e_port
ReplacedElement bounds:portRef=lb_EX_for_e_port
0.0 mmol_per_h 10 3 mole 3600 s
ub_EX_for_e
ReplacedElement fba:portRef=ub_EX_for_e_port
ReplacedElement bounds:portRef=ub_EX_for_e_port
1000.0 mmol_per_h 10 3 mole 3600 s
lb_EX_fru_e
ReplacedElement fba:portRef=lb_EX_fru_e_port
ReplacedElement bounds:portRef=lb_EX_fru_e_port
0.0 mmol_per_h 10 3 mole 3600 s
ub_EX_fru_e
ReplacedElement fba:portRef=ub_EX_fru_e_port
ReplacedElement bounds:portRef=ub_EX_fru_e_port
1000.0 mmol_per_h 10 3 mole 3600 s
lb_EX_h2o_e
ReplacedElement fba:portRef=lb_EX_h2o_e_port
ReplacedElement bounds:portRef=lb_EX_h2o_e_port
-1000.0 mmol_per_h 10 3 mole 3600 s
ub_EX_h2o_e
ReplacedElement fba:portRef=ub_EX_h2o_e_port
ReplacedElement bounds:portRef=ub_EX_h2o_e_port
1000.0 mmol_per_h 10 3 mole 3600 s
lb_EX_akg_e
ReplacedElement fba:portRef=lb_EX_akg_e_port
ReplacedElement bounds:portRef=lb_EX_akg_e_port
0.0 mmol_per_h 10 3 mole 3600 s
ub_EX_akg_e
ReplacedElement fba:portRef=ub_EX_akg_e_port
ReplacedElement bounds:portRef=ub_EX_akg_e_port
1000.0 mmol_per_h 10 3 mole 3600 s
lb_EX_pyr_e
ReplacedElement fba:portRef=lb_EX_pyr_e_port
ReplacedElement bounds:portRef=lb_EX_pyr_e_port
0.0 mmol_per_h 10 3 mole 3600 s
ub_EX_pyr_e
ReplacedElement fba:portRef=ub_EX_pyr_e_port
ReplacedElement bounds:portRef=ub_EX_pyr_e_port
1000.0 mmol_per_h 10 3 mole 3600 s
lb_EX_glc__D_e
ReplacedElement fba:portRef=lb_EX_glc__D_e_port
ReplacedElement bounds:portRef=lb_EX_glc__D_e_port
-10.0 mmol_per_h 10 3 mole 3600 s
ub_EX_glc__D_e
ReplacedElement fba:portRef=ub_EX_glc__D_e_port
ReplacedElement bounds:portRef=ub_EX_glc__D_e_port
1000.0 mmol_per_h 10 3 mole 3600 s
lb_EX_fum_e
ReplacedElement fba:portRef=lb_EX_fum_e_port
ReplacedElement bounds:portRef=lb_EX_fum_e_port
0.0 mmol_per_h 10 3 mole 3600 s
ub_EX_fum_e
ReplacedElement fba:portRef=ub_EX_fum_e_port
ReplacedElement bounds:portRef=ub_EX_fum_e_port
1000.0 mmol_per_h 10 3 mole 3600 s
lb_EX_X
ReplacedElement fba:portRef=lb_EX_X_port
ReplacedElement bounds:portRef=lb_EX_X_port
0.0 mmol_per_h 10 3 mole 3600 s
ub_EX_X
ReplacedElement fba:portRef=ub_EX_X_port
ReplacedElement bounds:portRef=ub_EX_X_port
1000.0 mmol_per_h 10 3 mole 3600 s
lb_EX_pi_e
ReplacedElement fba:portRef=lb_EX_pi_e_port
ReplacedElement bounds:portRef=lb_EX_pi_e_port
-1000.0 mmol_per_h 10 3 mole 3600 s
ub_EX_pi_e
ReplacedElement fba:portRef=ub_EX_pi_e_port
ReplacedElement bounds:portRef=ub_EX_pi_e_port
1000.0 mmol_per_h 10 3 mole 3600 s
lb_EX_lac__D_e
ReplacedElement fba:portRef=lb_EX_lac__D_e_port
ReplacedElement bounds:portRef=lb_EX_lac__D_e_port
0.0 mmol_per_h 10 3 mole 3600 s
ub_EX_lac__D_e
ReplacedElement fba:portRef=ub_EX_lac__D_e_port
ReplacedElement bounds:portRef=ub_EX_lac__D_e_port
1000.0 mmol_per_h 10 3 mole 3600 s
lb_EX_gln__L_e
ReplacedElement fba:portRef=lb_EX_gln__L_e_port
ReplacedElement bounds:portRef=lb_EX_gln__L_e_port
0.0 mmol_per_h 10 3 mole 3600 s
ub_EX_gln__L_e
ReplacedElement fba:portRef=ub_EX_gln__L_e_port
ReplacedElement bounds:portRef=ub_EX_gln__L_e_port
1000.0 mmol_per_h 10 3 mole 3600 s
lb_EX_acald_e
ReplacedElement fba:portRef=lb_EX_acald_e_port
ReplacedElement bounds:portRef=lb_EX_acald_e_port
0.0 mmol_per_h 10 3 mole 3600 s
ub_EX_acald_e
ReplacedElement fba:portRef=ub_EX_acald_e_port
ReplacedElement bounds:portRef=ub_EX_acald_e_port
1000.0 mmol_per_h 10 3 mole 3600 s
lb_EX_etoh_e
ReplacedElement fba:portRef=lb_EX_etoh_e_port
ReplacedElement bounds:portRef=lb_EX_etoh_e_port
0.0 mmol_per_h 10 3 mole 3600 s
ub_EX_etoh_e
ReplacedElement fba:portRef=ub_EX_etoh_e_port
ReplacedElement bounds:portRef=ub_EX_etoh_e_port
1000.0 mmol_per_h 10 3 mole 3600 s
lb_EX_ac_e
ReplacedElement fba:portRef=lb_EX_ac_e_port
ReplacedElement bounds:portRef=lb_EX_ac_e_port
0.0 mmol_per_h 10 3 mole 3600 s
ub_EX_ac_e
ReplacedElement fba:portRef=ub_EX_ac_e_port
ReplacedElement bounds:portRef=ub_EX_ac_e_port
1000.0 mmol_per_h 10 3 mole 3600 s
lb_EX_succ_e
ReplacedElement fba:portRef=lb_EX_succ_e_port
ReplacedElement bounds:portRef=lb_EX_succ_e_port
0.0 mmol_per_h 10 3 mole 3600 s
ub_EX_succ_e
ReplacedElement fba:portRef=ub_EX_succ_e_port
ReplacedElement bounds:portRef=ub_EX_succ_e_port
1000.0 mmol_per_h 10 3 mole 3600 s
lb_EX_o2_e
ReplacedElement fba:portRef=lb_EX_o2_e_port
ReplacedElement bounds:portRef=lb_EX_o2_e_port
-1000.0 mmol_per_h 10 3 mole 3600 s
ub_EX_o2_e
ReplacedElement fba:portRef=ub_EX_o2_e_port
ReplacedElement bounds:portRef=ub_EX_o2_e_port
1000.0 mmol_per_h 10 3 mole 3600 s
lb_EX_mal__L_e
ReplacedElement fba:portRef=lb_EX_mal__L_e_port
ReplacedElement bounds:portRef=lb_EX_mal__L_e_port
0.0 mmol_per_h 10 3 mole 3600 s
ub_EX_mal__L_e
ReplacedElement fba:portRef=ub_EX_mal__L_e_port
ReplacedElement bounds:portRef=ub_EX_mal__L_e_port
1000.0 mmol_per_h 10 3 mole 3600 s
lb_EX_h_e
ReplacedElement fba:portRef=lb_EX_h_e_port
ReplacedElement bounds:portRef=lb_EX_h_e_port
-1000.0 mmol_per_h 10 3 mole 3600 s
ub_EX_h_e
ReplacedElement fba:portRef=ub_EX_h_e_port
ReplacedElement bounds:portRef=ub_EX_h_e_port
1000.0 mmol_per_h 10 3 mole 3600 s
lb_EX_co2_e
ReplacedElement fba:portRef=lb_EX_co2_e_port
ReplacedElement bounds:portRef=lb_EX_co2_e_port
-1000.0 mmol_per_h 10 3 mole 3600 s
ub_EX_co2_e
ReplacedElement fba:portRef=ub_EX_co2_e_port
ReplacedElement bounds:portRef=ub_EX_co2_e_port
1000.0 mmol_per_h 10 3 mole 3600 s
lb_EX_nh4_e
ReplacedElement fba:portRef=lb_EX_nh4_e_port
ReplacedElement bounds:portRef=lb_EX_nh4_e_port
-1000.0 mmol_per_h 10 3 mole 3600 s
ub_EX_nh4_e
ReplacedElement fba:portRef=ub_EX_nh4_e_port
ReplacedElement bounds:portRef=ub_EX_nh4_e_port
1000.0 mmol_per_h 10 3 mole 3600 s
lb_EX_glu__L_e
ReplacedElement fba:portRef=lb_EX_glu__L_e_port
ReplacedElement bounds:portRef=lb_EX_glu__L_e_port
0.0 mmol_per_h 10 3 mole 3600 s
ub_EX_glu__L_e
ReplacedElement fba:portRef=ub_EX_glu__L_e_port
ReplacedElement bounds:portRef=ub_EX_glu__L_e_port
1000.0 mmol_per_h 10 3 mole 3600 s
pEX_for_e
ReplacedElement update:portRef=pEX_for_e_port
1.0 mmol_per_h 10 3 mole 3600 s
pEX_fru_e
ReplacedElement update:portRef=pEX_fru_e_port
1.0 mmol_per_h 10 3 mole 3600 s
pEX_h2o_e
ReplacedElement update:portRef=pEX_h2o_e_port
1.0 mmol_per_h 10 3 mole 3600 s
pEX_akg_e
ReplacedElement update:portRef=pEX_akg_e_port
1.0 mmol_per_h 10 3 mole 3600 s
pEX_pyr_e
ReplacedElement update:portRef=pEX_pyr_e_port
1.0 mmol_per_h 10 3 mole 3600 s
pEX_glc__D_e
ReplacedElement update:portRef=pEX_glc__D_e_port
1.0 mmol_per_h 10 3 mole 3600 s
pEX_fum_e
ReplacedElement update:portRef=pEX_fum_e_port
1.0 mmol_per_h 10 3 mole 3600 s
pEX_X
ReplacedElement update:portRef=pEX_X_port
1.0 mmol_per_h 10 3 mole 3600 s
pEX_pi_e
ReplacedElement update:portRef=pEX_pi_e_port
1.0 mmol_per_h 10 3 mole 3600 s
pEX_lac__D_e
ReplacedElement update:portRef=pEX_lac__D_e_port
1.0 mmol_per_h 10 3 mole 3600 s
pEX_gln__L_e
ReplacedElement update:portRef=pEX_gln__L_e_port
1.0 mmol_per_h 10 3 mole 3600 s
pEX_acald_e
ReplacedElement update:portRef=pEX_acald_e_port
1.0 mmol_per_h 10 3 mole 3600 s
pEX_etoh_e
ReplacedElement update:portRef=pEX_etoh_e_port
1.0 mmol_per_h 10 3 mole 3600 s
pEX_ac_e
ReplacedElement update:portRef=pEX_ac_e_port
1.0 mmol_per_h 10 3 mole 3600 s
pEX_succ_e
ReplacedElement update:portRef=pEX_succ_e_port
1.0 mmol_per_h 10 3 mole 3600 s
pEX_o2_e
ReplacedElement update:portRef=pEX_o2_e_port
1.0 mmol_per_h 10 3 mole 3600 s
pEX_mal__L_e
ReplacedElement update:portRef=pEX_mal__L_e_port
1.0 mmol_per_h 10 3 mole 3600 s
pEX_h_e
ReplacedElement update:portRef=pEX_h_e_port
1.0 mmol_per_h 10 3 mole 3600 s
pEX_co2_e
ReplacedElement update:portRef=pEX_co2_e_port
1.0 mmol_per_h 10 3 mole 3600 s
pEX_nh4_e
ReplacedElement update:portRef=pEX_nh4_e_port
1.0 mmol_per_h 10 3 mole 3600 s
pEX_glu__L_e
ReplacedElement update:portRef=pEX_glu__L_e_port
1.0 mmol_per_h 10 3 mole 3600 s

Rules [21]   assignment name derived units sbo cvterm
pEX_for_e = EX_for_e 10 3 mole 3600 s
pEX_fru_e = EX_fru_e 10 3 mole 3600 s
pEX_h2o_e = EX_h2o_e 10 3 mole 3600 s
pEX_akg_e = EX_akg_e 10 3 mole 3600 s
pEX_pyr_e = EX_pyr_e 10 3 mole 3600 s
pEX_glc__D_e = EX_glc__D_e 10 3 mole 3600 s
pEX_fum_e = EX_fum_e 10 3 mole 3600 s
pEX_X = EX_X 10 3 mole 3600 s
pEX_pi_e = EX_pi_e 10 3 mole 3600 s
pEX_lac__D_e = EX_lac__D_e 10 3 mole 3600 s
pEX_gln__L_e = EX_gln__L_e 10 3 mole 3600 s
pEX_acald_e = EX_acald_e 10 3 mole 3600 s
pEX_etoh_e = EX_etoh_e 10 3 mole 3600 s
pEX_ac_e = EX_ac_e 10 3 mole 3600 s
pEX_succ_e = EX_succ_e 10 3 mole 3600 s
pEX_o2_e = EX_o2_e 10 3 mole 3600 s
pEX_mal__L_e = EX_mal__L_e 10 3 mole 3600 s
pEX_h_e = EX_h_e 10 3 mole 3600 s
pEX_co2_e = EX_co2_e 10 3 mole 3600 s
pEX_nh4_e = EX_nh4_e 10 3 mole 3600 s
pEX_glu__L_e = EX_glu__L_e 10 3 mole 3600 s

Reactions [21] name equation modifiers kinetic law derived units sbo cvterm
EX_for_e
ReplacedBy fba:portRef=EX_for_e_port

➞ dummy_S 0 10 3 mole 3600 s
EX_fru_e
ReplacedBy fba:portRef=EX_fru_e_port

➞ dummy_S 0 10 3 mole 3600 s
EX_h2o_e
ReplacedBy fba:portRef=EX_h2o_e_port

➞ dummy_S 0 10 3 mole 3600 s
EX_akg_e
ReplacedBy fba:portRef=EX_akg_e_port

➞ dummy_S 0 10 3 mole 3600 s
EX_pyr_e
ReplacedBy fba:portRef=EX_pyr_e_port

➞ dummy_S 0 10 3 mole 3600 s
EX_glc__D_e
ReplacedBy fba:portRef=EX_glc__D_e_port

➞ dummy_S 0 10 3 mole 3600 s
EX_fum_e
ReplacedBy fba:portRef=EX_fum_e_port

➞ dummy_S 0 10 3 mole 3600 s
EX_X
ReplacedBy fba:portRef=EX_X_port

➞ dummy_S 0 10 3 mole 3600 s
EX_pi_e
ReplacedBy fba:portRef=EX_pi_e_port

➞ dummy_S 0 10 3 mole 3600 s
EX_lac__D_e
ReplacedBy fba:portRef=EX_lac__D_e_port

➞ dummy_S 0 10 3 mole 3600 s
EX_gln__L_e
ReplacedBy fba:portRef=EX_gln__L_e_port

➞ dummy_S 0 10 3 mole 3600 s
EX_acald_e
ReplacedBy fba:portRef=EX_acald_e_port

➞ dummy_S 0 10 3 mole 3600 s
EX_etoh_e
ReplacedBy fba:portRef=EX_etoh_e_port

➞ dummy_S 0 10 3 mole 3600 s
EX_ac_e
ReplacedBy fba:portRef=EX_ac_e_port

➞ dummy_S 0 10 3 mole 3600 s
EX_succ_e
ReplacedBy fba:portRef=EX_succ_e_port

➞ dummy_S 0 10 3 mole 3600 s
EX_o2_e
ReplacedBy fba:portRef=EX_o2_e_port

➞ dummy_S 0 10 3 mole 3600 s
EX_mal__L_e
ReplacedBy fba:portRef=EX_mal__L_e_port

➞ dummy_S 0 10 3 mole 3600 s
EX_h_e
ReplacedBy fba:portRef=EX_h_e_port

➞ dummy_S 0 10 3 mole 3600 s
EX_co2_e
ReplacedBy fba:portRef=EX_co2_e_port

➞ dummy_S 0 10 3 mole 3600 s
EX_nh4_e
ReplacedBy fba:portRef=EX_nh4_e_port

➞ dummy_S 0 10 3 mole 3600 s
EX_glu__L_e
ReplacedBy fba:portRef=EX_glu__L_e_port

➞ dummy_S 0 10 3 mole 3600 s