conda install -c conda-forge -c bioconda -c pytorch mira-multiome
Multimodal models for Integrated Regulatory Analysis, or MIRA, is a python package for analyzing the dynamic processes of gene regulation using single-cell multiomics datasets.
MIRA works on top of Scanpy and Anndata to provide a rich, comprehensive framework integrating accessibility and expression data for more insights into your data. MIRA includes methods for:
... And more! Check out the MIRA preprint on bioarxiv. Also, see Getting Started for installation and data preparation instructions.