CAMSA report

Assemblies overview

ID Name # APs Orientations (O / SO / U) NC OC / OSC IC / ISC MAP
A1 scaffmatch 188 188 / 0 / 0 178 10 / 0 0 / 0 185 (98.40 %)
A2 sga 124 124 / 0 / 0 120 4 / 0 0 / 0 121 (97.58 %)
A3 soap2 187 187 / 0 / 0 177 10 / 0 0 / 0 186 (99.47 %)
A4 sspace 187 187 / 0 / 0 179 8 / 0 0 / 0 185 (98.93 %)
ID Name # APs Orientations (O / SO / U) NC OC / OSC IC / ISC MAP

Individual assemblies


Seq1 Seq2 Or1 Or2 Or ISC IC OSC OC Unique MAP
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Seq1 Seq2 Or1 Or2 Or ISC IC OSC OC Unique MAP
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Seq1 Seq2 Or1 Or2 Or ISC IC OSC OC Unique MAP
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30 62 + + O 0 0 0 0 0 1
147 79 - - O 0 0 0 0 0 1
169 172 - - O 0 0 0 0 0 1
132 143 - - O 0 0 0 0 0 1
130 144 - - O 0 0 0 0 0 1
29 64 + + O 0 0 0 0 0 1
119 54 + + O 0 0 0 0 0 1
146 4 - - O 0 0 0 1 0 1
80 99 + + O 0 0 0 0 0 1
4 82 - - O 0 0 0 1 0 1
26 32 + + O 0 0 0 0 0 1
161 5 + - O 0 0 0 0 1 1
199 56 - - O 0 0 0 0 0 1
13 157 - - O 0 0 0 0 0 1
106 148 + + O 0 0 0 0 0 1
9 97 + + O 0 0 0 0 0 1
18 49 - - O 0 0 0 1 1 0
104 36 + + O 0 0 0 0 0 1
121 184 - - O 0 0 0 0 0 1
136 72 + + O 0 0 0 0 0 1
177 52 + + O 0 0 0 0 0 1
64 89 + + O 0 0 0 0 0 1
179 95 + + O 0 0 0 0 0 1
191 86 + + O 0 0 0 0 0 1
140 75 - - O 0 0 0 0 0 1
167 172 - + O 0 0 0 0 0 0
37 80 + + O 0 0 0 0 0 1
81 91 + + O 0 0 0 0 0 1
103 73 - - O 0 0 0 0 0 1
159 163 - + O 0 0 0 0 0 1
102 42 + + O 0 0 0 0 0 1
124 126 + + O 0 0 0 0 0 1
14 152 + + O 0 0 0 0 0 1
15 2 + + O 0 0 0 0 0 1
116 74 - - O 0 0 0 0 0 1
169 185 + - O 0 0 0 0 0 1
32 84 + + O 0 0 0 0 0 1
144 189 - - O 0 0 0 0 0 1
107 47 + + O 0 0 0 0 0 1
143 6 - - O 0 0 0 1 0 1
137 83 + + O 0 0 0 0 0 1
182 30 + + O 0 0 0 0 0 1
0 16 + + O 0 0 0 1 1 1
124 146 - - O 0 0 0 0 0 1
126 188 + + O 0 0 0 0 0 1
159 170 + + O 0 0 0 0 0 1
104 44 - - O 0 0 0 0 0 1
173 174 + + O 0 0 0 0 0 1
192 55 + + O 0 0 0 0 0 1
15 92 - - O 0 0 0 0 0 1
152 155 + + O 0 0 0 0 0 1
47 8 + + O 0 0 0 0 0 1
120 2 - - O 0 0 0 0 0 1
134 37 + + O 0 0 0 0 0 1
140 31 + + O 0 0 0 0 0 1
153 70 - - O 0 0 0 0 0 1
102 153 - - O 0 0 0 0 0 1
12 31 - - O 0 0 0 0 0 1
45 95 - - O 0 0 0 0 0 1
51 77 + + O 0 0 0 0 0 1
46 65 - - O 0 0 0 0 0 1
167 168 + + O 0 0 0 0 0 1
133 27 - - O 0 0 0 0 0 1
6 90 - - O 0 0 0 1 0 1
198 69 - - O 0 0 0 0 0 1
22 98 + + O 0 0 0 0 0 1
119 97 - - O 0 0 0 0 0 1
171 192 + + O 0 0 0 0 0 1
65 77 - - O 0 0 0 0 0 1
130 190 + + O 0 0 0 0 0 1
203 60 + + O 0 0 0 0 0 1
14 145 - - O 0 0 0 0 0 1
137 183 - - O 0 0 0 0 0 1
114 115 + + O 0 0 0 0 0 1
186 85 - - O 0 0 0 0 0 1
88 93 - - O 0 0 0 0 0 1
109 148 - - O 0 0 0 0 0 1
136 68 - - O 0 0 0 0 0 1
133 183 + + O 0 0 0 0 0 1
11 180 - - O 0 0 0 0 0 1
115 177 + + O 0 0 0 0 0 1
194 26 + + O 0 0 0 0 0 1
Seq1 Seq2 Or1 Or2 Or ISC IC OSC OC Unique MAP

Aggregated assembly points

[ scaffmatch (A1); sga (A2); soap2 (A3); sspace (A4) ]


Sequence lengths

Sources Seq1 Seq2 OOr1 OOr2 POr1 POr2 Or1 Or2 CW Or ISC IC OSC OC MAP self_id detailed
[A1, A2, A3, A4] 165 81 + + + + + + 4.0 O 0 0 0 0 1 m_0 0
[A1, A3, A4] 127 181 - - - - - - 3.0 O 0 0 0 0 1 m_1 0
[A1, A2, A3, A4] 20 207 + + + + + + 4.0 O 0 0 0 0 1 m_2 0
[A1, A2, A3, A4] 154 99 - - - - - - 4.0 O 0 0 0 0 1 m_3 0
[A1, A3, A4] 18 33 + + + + + + 3.0 O 0 0 0 0 1 m_4 0
[A1, A2, A3, A4] 62 70 + + + + + + 4.0 O 0 0 0 0 1 m_5 0
[A1, A3, A4] 164 175 + + + + + + 3.0 O 0 0 0 0 1 m_6 0
[A1, A2, A3, A4] 103 87 + + + + + + 4.0 O 0 0 0 0 1 m_7 0
[A1, A2, A3, A4] 199 35 + + + + + + 4.0 O 0 0 0 0 1 m_8 0
[A1] 112 113 + - None None + - 1.0 O 0 0 0 [A3, A4] 0 m_9 0
[A1, A2, A3, A4] 147 92 + + + + + + 4.0 O 0 0 0 0 1 m_10 0
[A1, A2, A3, A4] 203 78 - - - - - - 4.0 O 0 0 0 0 1 m_11 0
[A1, A2, A3, A4] 58 96 - - - - - - 4.0 O 0 0 0 0 1 m_12 0
[A1, A2, A3, A4] 179 54 - - - - - - 4.0 O 0 0 0 0 1 m_13 0
[A1, A3, A4] 38 73 + + + + + + 3.0 O 0 0 0 0 1 m_14 0
[A1, A3, A4] 68 7 - - - - - - 3.0 O 0 0 0 0 1 m_15 0
[A1, A2, A3, A4] 120 76 + + + + + + 4.0 O 0 0 0 0 1 m_16 0
[A1, A2, A3, A4] 198 23 + + + + + + 4.0 O 0 0 0 0 1 m_17 0
[A4] 0 205 - - - - - - 1.0 O 0 0 0 [A3] 1 m_18 0
[A1, A2, A3, A4] 101 27 + + + + + + 4.0 O 0 0 0 0 1 m_19 0
[A1, A2, A3, A4] 57 59 - - - - - - 4.0 O 0 0 0 0 1 m_20 0
[A1, A2, A3, A4] 178 204 + + + + + + 4.0 O 0 0 0 0 1 m_21 0
[A1, A3, A4] 131 205 + + + + + + 3.0 O 0 0 0 0 1 m_22 0
[A1, A3, A4] 193 40 - - - - - - 3.0 O 0 0 0 0 1 m_23 0
[A1, A2, A3, A4] 110 61 - - - - - - 4.0 O 0 0 0 0 1 m_24 0
[A1, A2, A3, A4] 182 39 - - - - - - 4.0 O 0 0 0 0 1 m_25 0
[A1, A2, A3, A4] 12 49 + + + + + + 4.0 O 0 0 0 0 1 m_26 0
[A1, A3] 142 3 + + + + + + 2.0 O 0 0 0 [A2] 1 m_27 0
[A1, A2, A3, A4] 41 56 + + + + + + 4.0 O 0 0 0 0 1 m_28 0
[A1] 200 21 + + + + + + 1.0 O 0 0 0 0 1 m_29 0
[A1, A3, A4] 202 24 + + + + + + 3.0 O 0 0 0 0 1 m_30 0
[A1, A3, A4] 131 43 - - - - - - 3.0 O 0 0 0 0 1 m_31 0
[A1, A2, A3, A4] 34 57 - - - - - - 4.0 O 0 0 0 0 1 m_32 0
[A1, A2, A3, A4] 109 44 + + + + + + 4.0 O 0 0 0 0 1 m_33 0
[A1, A3, A4] 139 178 + + + + + + 3.0 O 0 0 0 0 1 m_34 0
[A1, A2, A3, A4] 129 35 - - - - - - 4.0 O 0 0 0 0 1 m_35 0
[A1] 158 166 + - + - + - 1.0 O 0 0 0 0 1 m_36 0
[A1, A2, A3, A4] 163 185 + + + + + + 4.0 O 0 0 0 0 1 m_37 0
[A1, A2, A3, A4] 202 207 - - - - - - 4.0 O 0 0 0 0 1 m_38 0
[A1, A2, A3, A4] 111 40 + + + + + + 4.0 O 0 0 0 0 1 m_39 0
[A1, A2, A3] 48 49 + - + - + - 3.0 O 0 0 0 [A4] 1 m_40 0
[A1, A3, A4] 195 24 - - - - - - 3.0 O 0 0 0 0 1 m_41 0
[A1, A2, A3, A4] 28 55 - - - - - - 4.0 O 0 0 0 0 1 m_42 0
[A1, A3, A4] 11 29 + + + + + + 3.0 O 0 0 0 0 1 m_43 0
[A1, A2, A3, A4] 162 168 + - + - + - 4.0 O 0 0 0 0 1 m_44 0
[A1, A3, A4] 128 72 - - - - - - 3.0 O 0 0 0 0 1 m_45 0
[A1, A2, A3, A4] 105 17 - - - - - - 4.0 O 0 0 0 0 1 m_46 0
[A1, A2, A3, A4] 108 150 + + + + + + 4.0 O 0 0 0 0 1 m_47 0
[A3, A4] 16 176 + + + + + + 2.0 O 0 0 0 0 1 m_48 0
[A1, A2, A3, A4] 197 63 - - - - - - 4.0 O 0 0 0 0 1 m_49 0
[A1, A2, A3] 10 71 + + + + + + 3.0 O 0 0 0 0 1 m_50 0
[A1, A2, A3, A4] 190 59 + + + + + + 4.0 O 0 0 0 0 1 m_51 0
[A1, A2, A3, A4] 106 76 - - - - - - 4.0 O 0 0 0 0 1 m_52 0
[A1, A2, A3, A4] 67 69 + + + + + + 4.0 O 0 0 0 0 1 m_53 0
[A1, A2, A3, A4] 138 154 - - - - - - 4.0 O 0 0 0 0 1 m_54 0
[A1, A2, A3, A4] 67 83 - - - - - - 4.0 O 0 0 0 0 1 m_55 0
[A1, A3, A4] 128 53 + + + + + + 3.0 O 0 0 0 0 1 m_56 0
[A1, A3, A4] 187 42 - - - - - - 3.0 O 0 0 0 0 1 m_57 0
[A1, A3] 127 164 + + + + + + 2.0 O 0 0 0 0 1 m_58 0
[A1, A2, A3, A4] 108 135 - - - - - - 4.0 O 0 0 0 0 1 m_59 0
[A1, A2, A3, A4] 156 196 - - - - - - 4.0 O 0 0 0 0 1 m_60 0
[A1, A2, A3, A4] 170 181 + + + + + + 4.0 O 0 0 0 0 1 m_61 0
[A1, A3, A4] 134 66 - - - - - - 3.0 O 0 0 0 0 1 m_62 0
[A1, A3, A4] 13 38 + + + + + + 3.0 O 0 0 0 0 1 m_63 0
[A1, A3, A4] 117 74 + + + + + + 3.0 O 0 0 0 0 1 m_64 0
[A1, A2, A3, A4] 105 142 + + + + + + 4.0 O 0 0 0 0 1 m_65 0
[A1, A3] 10 3 - - - - - - 2.0 O 0 0 0 [A2] 1 m_66 0
[A1, A2, A3, A4] 138 78 + + + + + + 4.0 O 0 0 0 0 1 m_67 0
[A1, A2, A3, A4] 129 96 + + + + + + 4.0 O 0 0 0 0 1 m_68 0
[A1, A2, A3, A4] 141 23 - - - - - - 4.0 O 0 0 0 0 1 m_69 0
[A1, A2, A3, A4] 186 79 + + + + + + 4.0 O 0 0 0 0 1 m_70 0
[A1, A3, A4] 113 193 - - - - - - 3.0 O 0 0 0 0 1 m_71 0
[A1, A3, A4] 194 98 - - - - - - 3.0 O 0 0 0 0 1 m_72 0
[A1, A2, A3, A4] 111 58 - - - - - - 4.0 O 0 0 0 0 1 m_73 0
[A1, A2, A3, A4] 20 84 - - - - - - 4.0 O 0 0 0 0 1 m_74 0
[A1, A2, A3, A4] 116 9 + + + + + + 4.0 O 0 0 0 0 1 m_75 0
[A1, A2, A3, A4] 52 94 + + + + + + 4.0 O 0 0 0 0 1 m_76 0
[A1, A3, A4] 100 66 + + + + + + 3.0 O 0 0 0 0 1 m_77 0
[A1, A2, A3, A4] 100 118 - - - - - - 4.0 O 0 0 0 0 1 m_78 0
[A1, A2, A3, A4] 36 51 + + + + + + 4.0 O 0 0 0 0 1 m_79 0
[A1, A3, A4] 162 175 - - - - - - 3.0 O 0 0 0 0 1 m_80 0
[A1, A2, A3, A4] 118 71 - - - - - - 4.0 O 0 0 0 0 1 m_81 0
[A2, A3, A4] 188 201 + + + + + + 3.0 O 0 0 0 0 1 m_82 0
[A3, A4] 113 19 + + + + + + 2.0 O 0 0 0 [A1] 1 m_83 0
[A1, A3, A4] 41 8 - - - - - - 3.0 O 0 0 0 0 1 m_84 0
[A1, A2, A3, A4] 157 33 - - - - - - 4.0 O 0 0 0 0 1 m_85 0
[A1, A2, A3, A4] 141 93 + + + + + + 4.0 O 0 0 0 0 1 m_86 0
[A1, A3, A4] 22 88 - - - - - - 3.0 O 0 0 0 0 1 m_87 0
[A1, A2, A3, A4] 197 25 + + + + + + 4.0 O 0 0 0 0 1 m_88 0
[A1, A4] 21 43 + + + + + + 2.0 O 0 0 0 0 1 m_89 0
[A1, A2, A3, A4] 132 75 + + + + + + 4.0 O 0 0 0 0 1 m_90 0
[A1, A3, A4] 195 61 + + + + + + 3.0 O 0 0 0 0 1 m_91 0
[A4] 161 176 - - - - - - 1.0 O 0 0 0 0 1 m_92 0
[A1, A3, A4] 151 85 + + + + + + 3.0 O 0 0 0 0 1 m_93 0
[A1, A2, A3, A4] 101 91 - - - - - - 4.0 O 0 0 0 0 1 m_94 0
[A1, A3, A4] 149 7 + + + + + + 3.0 O 0 0 0 0 1 m_95 0
[A1, A3, A4] 149 155 - - - - - - 3.0 O 0 0 0 0 1 m_96 0
[A1, A3, A4] 189 60 - - - - - - 3.0 O 0 0 0 0 1 m_97 0
[A1, A2, A3, A4] 17 53 - - - - - - 4.0 O 0 0 0 0 1 m_98 0
[A1, A2, A3, A4] 110 63 + + + + + + 4.0 O 0 0 0 0 1 m_99 0
[A1, A2, A3, A4] 46 90 + + + + + + 4.0 O 0 0 0 0 1 m_100 0
[A1, A3, A4] 107 201 - - - - - - 3.0 O 0 0 0 0 1 m_101 0
[A1, A2, A3, A4] 82 94 - - - - - - 4.0 O 0 0 0 0 1 m_102 0
[A1, A2, A3, A4] 165 86 - - - - - - 4.0 O 0 0 0 0 1 m_103 0
[A1, A2, A3, A4] 145 28 - - - - - - 4.0 O 0 0 0 0 1 m_104 0
[A1, A2, A3, A4] 121 151 + + + + + + 4.0 O 0 0 0 0 1 m_105 0
[A1, A2, A3, A4] 196 87 - - - - - - 4.0 O 0 0 0 0 1 m_106 0
[A1, A2, A3, A4] 39 89 - - - - - - 4.0 O 0 0 0 0 1 m_107 0
[A3] 16 205 - - None None - - 1.0 O 0 0 0 [A4] 0 m_108 0
[A1, A3, A4] 139 25 - - - - - - 3.0 O 0 0 0 0 1 m_109 0
[A1, A2, A3, A4] 114 45 - - - - - - 4.0 O 0 0 0 0 1 m_110 0
[A1, A2, A3, A4] 117 34 - - - - - - 4.0 O 0 0 0 0 1 m_111 0
[A1, A3, A4] 180 19 - - - - - - 3.0 O 0 0 0 0 1 m_112 0
[A1, A2, A3, A4] 156 171 + + + + + + 4.0 O 0 0 0 0 1 m_113 0
[A1, A2, A3, A4] 30 62 + + + + + + 4.0 O 0 0 0 0 1 m_114 0
[A1, A2, A3, A4] 147 79 - - - - - - 4.0 O 0 0 0 0 1 m_115 0
[A1, A3, A4] 169 172 - - - - - - 3.0 O 0 0 0 0 1 m_116 0
[A1, A2, A3, A4] 132 143 - - - - - - 4.0 O 0 0 0 0 1 m_117 0
[A1, A2, A3, A4] 130 144 - - - - - - 4.0 O 0 0 0 0 1 m_118 0
[A1, A3, A4] 29 64 + + + + + + 3.0 O 0 0 0 0 1 m_119 0
[A1, A2, A3, A4] 119 54 + + + + + + 4.0 O 0 0 0 0 1 m_120 0
[A1, A3, A4] 146 4 - - - - - - 3.0 O 0 0 0 [A2] 1 m_121 0
[A1, A2, A3, A4] 80 99 + + + + + + 4.0 O 0 0 0 0 1 m_122 0
[A1, A3, A4] 4 82 - - - - - - 3.0 O 0 0 0 [A2] 1 m_123 0
[A1, A2, A3, A4] 26 32 + + + + + + 4.0 O 0 0 0 0 1 m_124 0
[A4] 161 5 + - + - + - 1.0 O 0 0 0 0 1 m_125 0
[A1, A2, A3, A4] 199 56 - - - - - - 4.0 O 0 0 0 0 1 m_126 0
[A1, A2, A3, A4] 13 157 - - - - - - 4.0 O 0 0 0 0 1 m_127 0
[A1, A3, A4] 106 148 + + + + + + 3.0 O 0 0 0 0 1 m_128 0
[A1, A2, A3, A4] 9 97 + + + + + + 4.0 O 0 0 0 0 1 m_129 0
[A4] 18 49 - - None None - - 1.0 O 0 0 0 [A1, A2, A3] 0 m_130 0
[A1, A2, A3, A4] 104 36 + + + + + + 4.0 O 0 0 0 0 1 m_131 0
[A1, A3, A4] 121 184 - - - - - - 3.0 O 0 0 0 0 1 m_132 0
[A1, A2, A3, A4] 136 72 + + + + + + 4.0 O 0 0 0 0 1 m_133 0
[A1, A2, A3, A4] 177 52 + + + + + + 4.0 O 0 0 0 0 1 m_134 0
[A1, A2, A3, A4] 64 89 + + + + + + 4.0 O 0 0 0 0 1 m_135 0
[A1, A2, A3, A4] 179 95 + + + + + + 4.0 O 0 0 0 0 1 m_136 0
[A1, A3, A4] 191 86 + + + + + + 3.0 O 0 0 0 0 1 m_137 0
[A1, A3, A4] 140 75 - - - - - - 3.0 O 0 0 0 0 1 m_138 0
[A1, A4] 167 172 - + None None - + 2.0 O 0 0 0 0 0 m_139 0
[A1, A3, A4] 37 80 + + + + + + 3.0 O 0 0 0 0 1 m_140 0
[A1, A2, A3, A4] 81 91 + + + + + + 4.0 O 0 0 0 0 1 m_141 0
[A1, A2, A3, A4] 103 73 - - - - - - 4.0 O 0 0 0 0 1 m_142 0
[A2, A3, A4] 159 163 - + - + - + 3.0 O 0 0 0 0 1 m_143 0
[A1, A2, A3, A4] 102 42 + + + + + + 4.0 O 0 0 0 0 1 m_144 0
[A1, A2, A3, A4] 124 126 + + + + + + 4.0 O 0 0 0 0 1 m_145 0
[A1, A2, A3, A4] 14 152 + + + + + + 4.0 O 0 0 0 0 1 m_146 0
[A1, A2, A3, A4] 15 2 + + + + + + 4.0 O 0 0 0 0 1 m_147 0
[A1, A3, A4] 116 74 - - - - - - 3.0 O 0 0 0 0 1 m_148 0
[A1, A3, A4] 169 185 + - + - + - 3.0 O 0 0 0 0 1 m_149 0
[A1, A2, A3, A4] 32 84 + + + + + + 4.0 O 0 0 0 0 1 m_150 0
[A1] 112 19 - + None None - + 1.0 O 0 0 0 [A3, A4] 0 m_151 0
[A1, A3, A4] 144 189 - - - - - - 3.0 O 0 0 0 0 1 m_152 0
[A1, A3, A4] 107 47 + + + + + + 3.0 O 0 0 0 0 1 m_153 0
[A1, A3, A4] 143 6 - - - - - - 3.0 O 0 0 0 [A2] 1 m_154 0
[A1] 158 160 - + - + - + 1.0 O 0 0 0 0 1 m_155 0
[A1, A2, A3, A4] 137 83 + + + + + + 4.0 O 0 0 0 0 1 m_156 0
[A1, A2, A3, A4] 182 30 + + + + + + 4.0 O 0 0 0 0 1 m_157 0
[A4] 0 16 + + + + + + 1.0 O 0 0 0 [A3] 1 m_158 0
[A1, A2, A3, A4] 124 146 - - - - - - 4.0 O 0 0 0 0 1 m_159 0
[A1, A3, A4] 126 188 + + + + + + 3.0 O 0 0 0 0 1 m_160 0
[A1, A2, A3, A4] 159 170 + + + + + + 4.0 O 0 0 0 0 1 m_161 0
[A1, A2, A3, A4] 104 44 - - - - - - 4.0 O 0 0 0 0 1 m_162 0
[A2] 10 142 - - None None - - 1.0 O 0 0 0 [A1, A3] 0 m_163 0
[A3, A4] 173 174 + + + + + + 2.0 O 0 0 0 0 1 m_164 0
[A1, A3, A4] 192 55 + + + + + + 3.0 O 0 0 0 0 1 m_165 0
[A1, A2, A3, A4] 15 92 - - - - - - 4.0 O 0 0 0 0 1 m_166 0
[A1, A2, A3, A4] 152 155 + + + + + + 4.0 O 0 0 0 0 1 m_167 0
[A1, A3, A4] 47 8 + + + + + + 3.0 O 0 0 0 0 1 m_168 0
[A1, A3] 18 48 - + - + - + 2.0 O 0 0 0 [A4] 1 m_169 0
[A1, A2, A3, A4] 120 2 - - - - - - 4.0 O 0 0 0 0 1 m_170 0
[A1, A3, A4] 134 37 + + + + + + 3.0 O 0 0 0 0 1 m_171 0
[A1, A3, A4] 140 31 + + + + + + 3.0 O 0 0 0 0 1 m_172 0
[A1, A2, A3, A4] 153 70 - - - - - - 4.0 O 0 0 0 0 1 m_173 0
[A1, A2, A3, A4] 102 153 - - - - - - 4.0 O 0 0 0 0 1 m_174 0
[A1, A2, A3, A4] 12 31 - - - - - - 4.0 O 0 0 0 0 1 m_175 0
[A1, A2, A3, A4] 45 95 - - - - - - 4.0 O 0 0 0 0 1 m_176 0
[A1, A2, A3, A4] 51 77 + + + + + + 4.0 O 0 0 0 0 1 m_177 0
[A1, A2, A3, A4] 46 65 - - - - - - 4.0 O 0 0 0 0 1 m_178 0
[A1, A3, A4] 167 168 + + + + + + 3.0 O 0 0 0 0 1 m_179 0
[A2] 146 82 - - None None - - 1.0 O 0 0 0 [A1, A3, A4] 0 m_180 0
[A1, A2, A3, A4] 133 27 - - - - - - 4.0 O 0 0 0 0 1 m_181 0
[A1, A3, A4] 6 90 - - - - - - 3.0 O 0 0 0 [A2] 1 m_182 0
[A1, A2, A3, A4] 198 69 - - - - - - 4.0 O 0 0 0 0 1 m_183 0
[A1, A3, A4] 22 98 + + + + + + 3.0 O 0 0 0 0 1 m_184 0
[A1, A2, A3, A4] 119 97 - - - - - - 4.0 O 0 0 0 0 1 m_185 0
[A1, A3, A4] 171 192 + + + + + + 3.0 O 0 0 0 0 1 m_186 0
[A1, A2, A3, A4] 65 77 - - - - - - 4.0 O 0 0 0 0 1 m_187 0
[A1, A2, A3, A4] 130 190 + + + + + + 4.0 O 0 0 0 0 1 m_188 0
[A1, A2, A3, A4] 203 60 + + + + + + 4.0 O 0 0 0 0 1 m_189 0
[A1, A2, A3, A4] 14 145 - - - - - - 4.0 O 0 0 0 0 1 m_190 0
[A1, A2, A3, A4] 137 183 - - - - - - 4.0 O 0 0 0 0 1 m_191 0
[A1, A2, A3, A4] 114 115 + + + + + + 4.0 O 0 0 0 0 1 m_192 0
[A1, A3, A4] 186 85 - - - - - - 3.0 O 0 0 0 0 1 m_193 0
[A1, A2, A3, A4] 88 93 - - - - - - 4.0 O 0 0 0 0 1 m_194 0
[A1, A3, A4] 109 148 - - - - - - 3.0 O 0 0 0 0 1 m_195 0
[A1, A2, A3, A4] 136 68 - - - - - - 4.0 O 0 0 0 0 1 m_196 0
[A1, A2, A3, A4] 133 183 + + + + + + 4.0 O 0 0 0 0 1 m_197 0
[A1, A2, A3, A4] 11 180 - - - - - - 4.0 O 0 0 0 0 1 m_198 0
[A1, A2, A3, A4] 115 177 + + + + + + 4.0 O 0 0 0 0 1 m_199 0
[A2] 143 90 - - None None - - 1.0 O 0 0 0 [A1, A3, A4] 0 m_200 0
[A1, A3, A4] 194 26 + + + + + + 3.0 O 0 0 0 0 1 m_201 0
Sources Seq1 Seq2 OOr1 OOr2 POr1 POr2 Or1 Or2 CW Or ISC IC OSC OC MAP self_id detailed

How to interpret column values

  • Sources: column represents the list of assemblies, that reported a particular assembly point. Assemblies are referred to by there ids, which in turn can be found in Assemblies summary table, as well as next to each assembly in the Individual assemblies section
  • Seq1: column corresponds to first, out of two fragments, that participate in the reported assembly point.
  • Seq2: column corresponds to second, out of two fragments, that participate in the reported assembly point
  • Or1: column corresponds to relative orientation of Seq1 wrt Seq2 in the reported assembly.
    1. + orientation corresponds to the head of Seq1 being adjacent in the reported assembly
    2. - orientation corresponds to the tail of Seq1 being adjacent in the reported assembly
  • Or2: column corresponds to relative orientation of Seq2 wrt Seq1 in the reported assembly.
    1. + orientation corresponds to the tail of Seq2 being adjacent in the reported assembly
    2. - orientation corresponds to the head of Seq2 being adjacent in the reported assembly
  • CW: confidence weight (score) for the reported assembly point. Equals to the sum of assembly points's scores, reported by each source
  • Or: a flag determining the class of the assembly point:
    1. O: oriented assembly point, that is for both fragments their extremities are specified
    2. SO: semi-oriented assembly point, that is only for one out of two fragments an assembly extremity is specified
    3. U: unoriented assembly point, that is for both fragments their extremities used for assembly are not specified
  • ISC: corresponds to the list of sources, with which this assembly point is In-SemiConflicted. This is the case, when the assembly point (by some, but not all of its realizations) is conflicted with some other assembly point (with some, but not all of later one's realizations), and they both come from same source.
    0 is specified if no in-semiconflicts were identified for this point.
  • IC: corresponds to the list of sources, with which this assembly point is In-Conflicted. This is the case, if the assembly point (by all of its realizations), is conflicted with some other assembly point (by all of later one's realizations), and they both come from the same source.
    0 is specified if no in-conflicts were identified for this point.
  • OSC: corresponds to the list of sources, with which this assembly point is Out-SemiConflicted. This is the case, when the assembly point (by some, but not all of its representations) is conflicted with some other assembly point (with some, but not all of later one's realizations), and they come from the different sources. 0 is specified is no out-semiconflicts were identified for this point.
  • OC: corresponds to the list of sources, with which this assembly point is Out-Conflicted. This is the case, when the assembly point (by all of its representations) is conflicted with some other assembly point (with all of later one's realizations), and they come from the different sources. 0 is specified is no out-semiconflicts were identified for this point.
  • MAP: is a flag (i.e. either 0 or 1) corresponding to whether this assembly point participates in the reported Merged-Assembly.

How to filter and order information in the table

  • Built-in filters: every column has a filter in the table heading.
    1. If the filter is represented an input field, then the smart Datatables search is used.
    2. If the input is represented with a dropdown, then all rows with values matching the chosen value will be kept.
    3. There is a table-wide filter on the top right of the table. Again the smart search is used, but in this case it is table-wide, not column specific.
  • Advanced filtering: There is a panel with advance filtering capabilities. Please refer to instructions in it.
Built-in and advanced filters can be combined together. The only difference is that build in filters revert filtering changes on-the-fly, once the filter criteria is removed, while for advanced filtering has to be manually reverted, with the "Remove all filters button".

using layout

Filter the table and draw the first graph


Reading the graph


Coloring

A1
A2
A3
A4

Edges

  • Scaffold edge: is a directed black edge with scaffold name written on it. Represents the scaffold, participating in one or more assembly points. Direction of the edge corresponds to its relative orientation.
    Example:

  • Assembly edge: colored (based on the source assembly) undirected edge corresponding to the reported assembly point.
    • Candidate: all assembly edges from un/semi-oriented assembly points are shown as dashed.
      Example:

    • Exact: all assembly edges from orientedassembly points are shown as solid.
      Example:

    If the edge is shown in bold, it means that the assembly point (its particular realization , corresponding to the egde), participates in the produced merged assembly.
    Example:


    Parallel assembly edges of several colors correspond to assembly points' representations, where the colors determine the list of source assemblies.
    Example:

Modifying the graph

  • Zooming: using the scroll of the mouse, one can zoom in and out of the graph. Note that the position of the pointer determines where the zoom will be focused.
  • Moving: use the standard drag operation to move the graph
  • Fitting: to fit the whole drawn graph in the frame, use the Fit button at the top of the picture

Saving graph image

Using the Save button on the top of the graph image itself, one can save the current view of the graph as a png picture.

Coming soon! Please follow GitHub repository of CAMSA to be notified about new releases.
Coming soon! Please follow GitHub repository of CAMSA to be notified about new releases.

Dr. Max A. Alekseyev: maxal@gwu.edu

The project is supported by the National Science Foundation under Grant No. IIS-1462107.

2016 - 2016