E.coli core DFBA model

Model version: 1

UPDATE submodel

Submodel for dynamically updating the metabolite count. This updates the ode model based on the FBA fluxes.

Description

This is a metabolism model of Homo sapiens in SBML format.

The content of this model has been carefully created in a manual research effort. This file has been exported from the software COBRApy and further processed with the JSBML-based ModelPolisher application.
This file has been produced by the Systems Biology Research Group using BiGG Models knowledge-base version of Nov 21, 2016, where it is currently hosted and identified by: iAB_RBC_283.

Terms of use

Copyright © 2016 The Regents of the University of California.

Redistribution and use of any part of this model from BiGG Models knowledge-base, with or without modification, are permitted provided that the following conditions are met:

  1. Redistributions of this SBML file must retain the above copyright notice, this list of conditions and the following disclaimer.
  2. Redistributions in a different form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution.
This model is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

For specific licensing terms about this particular model and regulations of commercial use, see this model in BiGG Models knowledge-base.

References

When using content from BiGG Models knowledge-base in your research works, please cite
King ZA, Lu JS, Dräger A, Miller PC, Federowicz S, Lerman JA, Ebrahim A, Palsson BO, and Lewis NE. (2015).
BiGG Models: A platform for integrating, standardizing, and sharing genome-scale models. Nucl Acids Res. doi:10.1093/nar/gkv1049

Model : rbc_update

Creator
Matthias, Koenig, Humboldt University Berlin, konigmatt@googlemail.com
Created: 2017-09-29 13:55
Modified: 2017-09-29 13:55

id rbc_update meta_rbc_update
namerbc (UPDATE)
timeh
substancemmol
extentmmol
volumel
aream2
lengthm
Access SBML model  L3V1 comp-V1

Ports [153] name referenced element port ref id ref unit ref metaid ref sbo cvterm
blood_port Compartment: blood blood
M_35cgmp_e_port Species: M_35cgmp_e M_35cgmp_e
M_3moxtyr_e_port Species: M_3moxtyr_e M_3moxtyr_e
M_4pyrdx_e_port Species: M_4pyrdx_e M_4pyrdx_e
M_5aop_e_port Species: M_5aop_e M_5aop_e
ac_e_port Species: ac_e ac_e
acald_e_port Species: acald_e acald_e
acnam_e_port Species: acnam_e acnam_e
ade_e_port Species: ade_e ade_e
adn_e_port Species: adn_e adn_e
adrnl_e_port Species: adrnl_e adrnl_e
ala__L_e_port Species: ala__L_e ala__L_e
arg__L_e_port Species: arg__L_e arg__L_e
ascb__L_e_port Species: ascb__L_e ascb__L_e
bilglcur_e_port Species: bilglcur_e bilglcur_e
ca2_e_port Species: ca2_e ca2_e
camp_e_port Species: camp_e camp_e
chol_e_port Species: chol_e chol_e
cl_e_port Species: cl_e cl_e
co_e_port Species: co_e co_e
co2_e_port Species: co2_e co2_e
cys__L_e_port Species: cys__L_e cys__L_e
dhdascb_e_port Species: dhdascb_e dhdascb_e
dopa_e_port Species: dopa_e dopa_e
etha_e_port Species: etha_e etha_e
fe2_e_port Species: fe2_e fe2_e
fru_e_port Species: fru_e fru_e
fum_e_port Species: fum_e fum_e
gal_e_port Species: gal_e gal_e
gam_e_port Species: gam_e gam_e
glc__D_e_port Species: glc__D_e glc__D_e
gln__L_e_port Species: gln__L_e gln__L_e
gluala_e_port Species: gluala_e gluala_e
gly_e_port Species: gly_e gly_e
glyc_e_port Species: glyc_e glyc_e
gthox_e_port Species: gthox_e gthox_e
h_e_port Species: h_e h_e
h2o_e_port Species: h2o_e h2o_e
h2o2_e_port Species: h2o2_e h2o2_e
hco3_e_port Species: hco3_e hco3_e
hcys__L_e_port Species: hcys__L_e hcys__L_e
hdca_e_port Species: hdca_e hdca_e
hxan_e_port Species: hxan_e hxan_e
ins_e_port Species: ins_e ins_e
k_e_port Species: k_e k_e
lac__D_e_port Species: lac__D_e lac__D_e
lac__L_e_port Species: lac__L_e lac__L_e
leuktrA4_e_port Species: leuktrA4_e leuktrA4_e
leuktrB4_e_port Species: leuktrB4_e leuktrB4_e
lnlc_e_port Species: lnlc_e lnlc_e
mal__L_e_port Species: mal__L_e mal__L_e
man_e_port Species: man_e man_e
mepi_e_port Species: mepi_e mepi_e
met__L_e_port Species: met__L_e met__L_e
na1_e_port Species: na1_e na1_e
nac_e_port Species: nac_e nac_e
ncam_e_port Species: ncam_e ncam_e
nh4_e_port Species: nh4_e nh4_e
normete__L_e_port Species: normete__L_e normete__L_e
nrpphr_e_port Species: nrpphr_e nrpphr_e
o2_e_port Species: o2_e o2_e
ocdcea_e_port Species: ocdcea_e ocdcea_e
orot_e_port Species: orot_e orot_e
phe__L_e_port Species: phe__L_e phe__L_e
pi_e_port Species: pi_e pi_e
ptrc_e_port Species: ptrc_e ptrc_e
pydam_e_port Species: pydam_e pydam_e
pydx_e_port Species: pydx_e pydx_e
pydxn_e_port Species: pydxn_e pydxn_e
pyr_e_port Species: pyr_e pyr_e
ribflv_e_port Species: ribflv_e ribflv_e
spmd_e_port Species: spmd_e spmd_e
sprm_e_port Species: sprm_e sprm_e
thm_e_port Species: thm_e thm_e
thmmp_e_port Species: thmmp_e thmmp_e
urea_e_port Species: urea_e urea_e
uri_e_port Species: uri_e uri_e
pEX_M_35cgmp_e_port Parameter: pEX_M_35cgmp_e pEX_M_35cgmp_e
pEX_M_3moxtyr_e_port Parameter: pEX_M_3moxtyr_e pEX_M_3moxtyr_e
pEX_M_4pyrdx_e_port Parameter: pEX_M_4pyrdx_e pEX_M_4pyrdx_e
pEX_M_5aop_e_port Parameter: pEX_M_5aop_e pEX_M_5aop_e
pEX_ac_e_port Parameter: pEX_ac_e pEX_ac_e
pEX_acald_e_port Parameter: pEX_acald_e pEX_acald_e
pEX_acnam_e_port Parameter: pEX_acnam_e pEX_acnam_e
pEX_ade_e_port Parameter: pEX_ade_e pEX_ade_e
pEX_adn_e_port Parameter: pEX_adn_e pEX_adn_e
pEX_adrnl_e_port Parameter: pEX_adrnl_e pEX_adrnl_e
pEX_ala__L_e_port Parameter: pEX_ala__L_e pEX_ala__L_e
pEX_arg__L_e_port Parameter: pEX_arg__L_e pEX_arg__L_e
pEX_ascb__L_e_port Parameter: pEX_ascb__L_e pEX_ascb__L_e
pEX_bilglcur_e_port Parameter: pEX_bilglcur_e pEX_bilglcur_e
pEX_ca2_e_port Parameter: pEX_ca2_e pEX_ca2_e
pEX_camp_e_port Parameter: pEX_camp_e pEX_camp_e
pEX_chol_e_port Parameter: pEX_chol_e pEX_chol_e
pEX_cl_e_port Parameter: pEX_cl_e pEX_cl_e
pEX_co_e_port Parameter: pEX_co_e pEX_co_e
pEX_co2_e_port Parameter: pEX_co2_e pEX_co2_e
pEX_cys__L_e_port Parameter: pEX_cys__L_e pEX_cys__L_e
pEX_dhdascb_e_port Parameter: pEX_dhdascb_e pEX_dhdascb_e
pEX_dopa_e_port Parameter: pEX_dopa_e pEX_dopa_e
pEX_etha_e_port Parameter: pEX_etha_e pEX_etha_e
pEX_fe2_e_port Parameter: pEX_fe2_e pEX_fe2_e
pEX_fru_e_port Parameter: pEX_fru_e pEX_fru_e
pEX_fum_e_port Parameter: pEX_fum_e pEX_fum_e
pEX_gal_e_port Parameter: pEX_gal_e pEX_gal_e
pEX_gam_e_port Parameter: pEX_gam_e pEX_gam_e
pEX_glc__D_e_port Parameter: pEX_glc__D_e pEX_glc__D_e
pEX_gln__L_e_port Parameter: pEX_gln__L_e pEX_gln__L_e
pEX_gluala_e_port Parameter: pEX_gluala_e pEX_gluala_e
pEX_gly_e_port Parameter: pEX_gly_e pEX_gly_e
pEX_glyc_e_port Parameter: pEX_glyc_e pEX_glyc_e
pEX_gthox_e_port Parameter: pEX_gthox_e pEX_gthox_e
pEX_h_e_port Parameter: pEX_h_e pEX_h_e
pEX_h2o_e_port Parameter: pEX_h2o_e pEX_h2o_e
pEX_h2o2_e_port Parameter: pEX_h2o2_e pEX_h2o2_e
pEX_hco3_e_port Parameter: pEX_hco3_e pEX_hco3_e
pEX_hcys__L_e_port Parameter: pEX_hcys__L_e pEX_hcys__L_e
pEX_hdca_e_port Parameter: pEX_hdca_e pEX_hdca_e
pEX_hxan_e_port Parameter: pEX_hxan_e pEX_hxan_e
pEX_ins_e_port Parameter: pEX_ins_e pEX_ins_e
pEX_k_e_port Parameter: pEX_k_e pEX_k_e
pEX_lac__D_e_port Parameter: pEX_lac__D_e pEX_lac__D_e
pEX_lac__L_e_port Parameter: pEX_lac__L_e pEX_lac__L_e
pEX_leuktrA4_e_port Parameter: pEX_leuktrA4_e pEX_leuktrA4_e
pEX_leuktrB4_e_port Parameter: pEX_leuktrB4_e pEX_leuktrB4_e
pEX_lnlc_e_port Parameter: pEX_lnlc_e pEX_lnlc_e
pEX_mal__L_e_port Parameter: pEX_mal__L_e pEX_mal__L_e
pEX_man_e_port Parameter: pEX_man_e pEX_man_e
pEX_mepi_e_port Parameter: pEX_mepi_e pEX_mepi_e
pEX_met__L_e_port Parameter: pEX_met__L_e pEX_met__L_e
pEX_na1_e_port Parameter: pEX_na1_e pEX_na1_e
pEX_nac_e_port Parameter: pEX_nac_e pEX_nac_e
pEX_ncam_e_port Parameter: pEX_ncam_e pEX_ncam_e
pEX_nh4_e_port Parameter: pEX_nh4_e pEX_nh4_e
pEX_normete__L_e_port Parameter: pEX_normete__L_e pEX_normete__L_e
pEX_nrpphr_e_port Parameter: pEX_nrpphr_e pEX_nrpphr_e
pEX_o2_e_port Parameter: pEX_o2_e pEX_o2_e
pEX_ocdcea_e_port Parameter: pEX_ocdcea_e pEX_ocdcea_e
pEX_orot_e_port Parameter: pEX_orot_e pEX_orot_e
pEX_phe__L_e_port Parameter: pEX_phe__L_e pEX_phe__L_e
pEX_pi_e_port Parameter: pEX_pi_e pEX_pi_e
pEX_ptrc_e_port Parameter: pEX_ptrc_e pEX_ptrc_e
pEX_pydam_e_port Parameter: pEX_pydam_e pEX_pydam_e
pEX_pydx_e_port Parameter: pEX_pydx_e pEX_pydx_e
pEX_pydxn_e_port Parameter: pEX_pydxn_e pEX_pydxn_e
pEX_pyr_e_port Parameter: pEX_pyr_e pEX_pyr_e
pEX_ribflv_e_port Parameter: pEX_ribflv_e pEX_ribflv_e
pEX_spmd_e_port Parameter: pEX_spmd_e pEX_spmd_e
pEX_sprm_e_port Parameter: pEX_sprm_e pEX_sprm_e
pEX_thm_e_port Parameter: pEX_thm_e pEX_thm_e
pEX_thmmp_e_port Parameter: pEX_thmmp_e pEX_thmmp_e
pEX_urea_e_port Parameter: pEX_urea_e pEX_urea_e
pEX_uri_e_port Parameter: pEX_uri_e pEX_uri_e

UnitDefinitions [12] name units sbo cvterm
h 3600 s
g g
m m
m2 m 2
l litre
mmol 10 3 mole
per_h 1 3600 s
mmol_per_h 10 3 mole 3600 s
mmol_per_l 10 3 mole litre
l_per_mmol litre 10 3 mole
g_per_l g litre
g_per_mmol g 10 3 mole

Compartments [1] name size constant spatial dimensions units derived units sbo cvterm
blood blood 1.0 3 l litre

Species [76] name compartment boundary condition constant initial amount initial concentration conversion factor units substance units derived units sbo cvterm
M_35cgmp_e 3',5'-Cyclic GMP blood 1.0 mmol_per_l mmol_per_l 10 3 mole litre litre
M_3moxtyr_e 3moxtyr c blood 1.0 mmol_per_l mmol_per_l 10 3 mole litre litre
M_4pyrdx_e 4pyrdx c blood 1.0 mmol_per_l mmol_per_l 10 3 mole litre litre
M_5aop_e 5-Amino-4-oxopentanoate blood 1.0 mmol_per_l mmol_per_l 10 3 mole litre litre
ac_e Acetate blood 1.0 mmol_per_l mmol_per_l 10 3 mole litre litre
acald_e Acetaldehyde blood 1.0 mmol_per_l mmol_per_l 10 3 mole litre litre
acnam_e N-Acetylneuraminate blood 1.0 mmol_per_l mmol_per_l 10 3 mole litre litre
ade_e Adenine blood 1.0 mmol_per_l mmol_per_l 10 3 mole litre litre
adn_e Adenosine blood 1.0 mmol_per_l mmol_per_l 10 3 mole litre litre
adrnl_e Adrnl c blood 1.0 mmol_per_l mmol_per_l 10 3 mole litre litre
ala__L_e L-Alanine blood 1.0 mmol_per_l mmol_per_l 10 3 mole litre litre
arg__L_e L-Arginine blood 1.0 mmol_per_l mmol_per_l 10 3 mole litre litre
ascb__L_e L-Ascorbate blood 1.0 mmol_per_l mmol_per_l 10 3 mole litre litre
bilglcur_e Bilglcur c blood 1.0 mmol_per_l mmol_per_l 10 3 mole litre litre
ca2_e Calcium blood 1.0 mmol_per_l mmol_per_l 10 3 mole litre litre
camp_e CAMP blood 1.0 mmol_per_l mmol_per_l 10 3 mole litre litre
chol_e Choline blood 1.0 mmol_per_l mmol_per_l 10 3 mole litre litre
cl_e Chloride blood 1.0 mmol_per_l mmol_per_l 10 3 mole litre litre
co_e Carbon monoxide blood 1.0 mmol_per_l mmol_per_l 10 3 mole litre litre
co2_e CO2 blood 1.0 mmol_per_l mmol_per_l 10 3 mole litre litre
cys__L_e L-Cysteine blood 1.0 mmol_per_l mmol_per_l 10 3 mole litre litre
dhdascb_e Dhdascb c blood 1.0 mmol_per_l mmol_per_l 10 3 mole litre litre
dopa_e Dopamine blood 1.0 mmol_per_l mmol_per_l 10 3 mole litre litre
etha_e Ethanolamine blood 1.0 mmol_per_l mmol_per_l 10 3 mole litre litre
fe2_e Fe2+ blood 1.0 mmol_per_l mmol_per_l 10 3 mole litre litre
fru_e D-Fructose blood 1.0 mmol_per_l mmol_per_l 10 3 mole litre litre
fum_e Fumarate blood 1.0 mmol_per_l mmol_per_l 10 3 mole litre litre
gal_e D-Galactose blood 1.0 mmol_per_l mmol_per_l 10 3 mole litre litre
gam_e D-Glucosamine blood 1.0 mmol_per_l mmol_per_l 10 3 mole litre litre
glc__D_e D-Glucose blood 1.0 mmol_per_l mmol_per_l 10 3 mole litre litre
gln__L_e L-Glutamine blood 1.0 mmol_per_l mmol_per_l 10 3 mole litre litre
gluala_e 5 L Glutamyl L alanine C8H13N2O5 blood 1.0 mmol_per_l mmol_per_l 10 3 mole litre litre
gly_e Glycine blood 1.0 mmol_per_l mmol_per_l 10 3 mole litre litre
glyc_e Glycerol blood 1.0 mmol_per_l mmol_per_l 10 3 mole litre litre
gthox_e Oxidized glutathione blood 1.0 mmol_per_l mmol_per_l 10 3 mole litre litre
h_e H+ blood 1.0 mmol_per_l mmol_per_l 10 3 mole litre litre
h2o_e H2O blood 1.0 mmol_per_l mmol_per_l 10 3 mole litre litre
h2o2_e Hydrogen peroxide blood 1.0 mmol_per_l mmol_per_l 10 3 mole litre litre
hco3_e Bicarbonate blood 1.0 mmol_per_l mmol_per_l 10 3 mole litre litre
hcys__L_e L-Homocysteine blood 1.0 mmol_per_l mmol_per_l 10 3 mole litre litre
hdca_e Hexadecanoate (n-C16:0) blood 1.0 mmol_per_l mmol_per_l 10 3 mole litre litre
hxan_e Hypoxanthine blood 1.0 mmol_per_l mmol_per_l 10 3 mole litre litre
ins_e Inosine blood 1.0 mmol_per_l mmol_per_l 10 3 mole litre litre
k_e Potassium blood 1.0 mmol_per_l mmol_per_l 10 3 mole litre litre
lac__D_e D-Lactate blood 1.0 mmol_per_l mmol_per_l 10 3 mole litre litre
lac__L_e L-Lactate blood 1.0 mmol_per_l mmol_per_l 10 3 mole litre litre
leuktrA4_e LeuktrA4 c blood 1.0 mmol_per_l mmol_per_l 10 3 mole litre litre
leuktrB4_e LeuktrB4 c blood 1.0 mmol_per_l mmol_per_l 10 3 mole litre litre
lnlc_e Lnlc c blood 1.0 mmol_per_l mmol_per_l 10 3 mole litre litre
mal__L_e L-Malate blood 1.0 mmol_per_l mmol_per_l 10 3 mole litre litre
man_e D-Mannose blood 1.0 mmol_per_l mmol_per_l 10 3 mole litre litre
mepi_e Mepi c blood 1.0 mmol_per_l mmol_per_l 10 3 mole litre litre
met__L_e L-Methionine blood 1.0 mmol_per_l mmol_per_l 10 3 mole litre litre
na1_e Sodium blood 1.0 mmol_per_l mmol_per_l 10 3 mole litre litre
nac_e Nicotinate blood 1.0 mmol_per_l mmol_per_l 10 3 mole litre litre
ncam_e Nicotinamide blood 1.0 mmol_per_l mmol_per_l 10 3 mole litre litre
nh4_e Ammonium blood 1.0 mmol_per_l mmol_per_l 10 3 mole litre litre
normete__L_e Normete L c blood 1.0 mmol_per_l mmol_per_l 10 3 mole litre litre
nrpphr_e Nrpphr c blood 1.0 mmol_per_l mmol_per_l 10 3 mole litre litre
o2_e O2 blood 1.0 mmol_per_l mmol_per_l 10 3 mole litre litre
ocdcea_e Octadecenoate (n-C18:1) blood 1.0 mmol_per_l mmol_per_l 10 3 mole litre litre
orot_e Orotate blood 1.0 mmol_per_l mmol_per_l 10 3 mole litre litre
phe__L_e L-Phenylalanine blood 1.0 mmol_per_l mmol_per_l 10 3 mole litre litre
pi_e Phosphate blood 1.0 mmol_per_l mmol_per_l 10 3 mole litre litre
ptrc_e Putrescine blood 1.0 mmol_per_l mmol_per_l 10 3 mole litre litre
pydam_e Pyridoxamine blood 1.0 mmol_per_l mmol_per_l 10 3 mole litre litre
pydx_e Pyridoxal blood 1.0 mmol_per_l mmol_per_l 10 3 mole litre litre
pydxn_e Pyridoxine blood 1.0 mmol_per_l mmol_per_l 10 3 mole litre litre
pyr_e Pyruvate blood 1.0 mmol_per_l mmol_per_l 10 3 mole litre litre
ribflv_e Riboflavin blood 1.0 mmol_per_l mmol_per_l 10 3 mole litre litre
spmd_e Spermidine blood 1.0 mmol_per_l mmol_per_l 10 3 mole litre litre
sprm_e Spermine C10H30N4 blood 1.0 mmol_per_l mmol_per_l 10 3 mole litre litre
thm_e Thiamin blood 1.0 mmol_per_l mmol_per_l 10 3 mole litre litre
thmmp_e Thiamin monophosphate blood 1.0 mmol_per_l mmol_per_l 10 3 mole litre litre
urea_e Urea blood 1.0 mmol_per_l mmol_per_l 10 3 mole litre litre
uri_e Uridine blood 1.0 mmol_per_l mmol_per_l 10 3 mole litre litre

Parameters [76] name constant value unit derived unit sbo cvterm
pEX_M_35cgmp_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_M_3moxtyr_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_M_4pyrdx_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_M_5aop_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_ac_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_acald_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_acnam_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_ade_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_adn_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_adrnl_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_ala__L_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_arg__L_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_ascb__L_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_bilglcur_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_ca2_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_camp_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_chol_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_cl_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_co_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_co2_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_cys__L_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_dhdascb_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_dopa_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_etha_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_fe2_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_fru_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_fum_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_gal_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_gam_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_glc__D_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_gln__L_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_gluala_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_gly_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_glyc_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_gthox_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_h_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_h2o_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_h2o2_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_hco3_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_hcys__L_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_hdca_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_hxan_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_ins_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_k_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_lac__D_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_lac__L_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_leuktrA4_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_leuktrB4_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_lnlc_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_mal__L_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_man_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_mepi_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_met__L_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_na1_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_nac_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_ncam_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_nh4_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_normete__L_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_nrpphr_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_o2_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_ocdcea_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_orot_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_phe__L_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_pi_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_ptrc_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_pydam_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_pydx_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_pydxn_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_pyr_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_ribflv_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_spmd_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_sprm_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_thm_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_thmmp_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_urea_e 1.0 mmol_per_h 10 3 mole 3600 s
pEX_uri_e 1.0 mmol_per_h 10 3 mole 3600 s

Reactions [76] name equation modifiers kinetic law derived units sbo cvterm
update_M_35cgmp_e
M_35cgmp_e ⇆ pEX_M_35cgmp_e 10 3 mole 3600 s
update_M_3moxtyr_e
M_3moxtyr_e ⇆ pEX_M_3moxtyr_e 10 3 mole 3600 s
update_M_4pyrdx_e
M_4pyrdx_e ⇆ pEX_M_4pyrdx_e 10 3 mole 3600 s
update_M_5aop_e
M_5aop_e ⇆ pEX_M_5aop_e 10 3 mole 3600 s
update_ac_e
ac_e ⇆ pEX_ac_e 10 3 mole 3600 s
update_acald_e
acald_e ⇆ pEX_acald_e 10 3 mole 3600 s
update_acnam_e
acnam_e ⇆ pEX_acnam_e 10 3 mole 3600 s
update_ade_e
ade_e ⇆ pEX_ade_e 10 3 mole 3600 s
update_adn_e
adn_e ⇆ pEX_adn_e 10 3 mole 3600 s
update_adrnl_e
adrnl_e ⇆ pEX_adrnl_e 10 3 mole 3600 s
update_ala__L_e
ala__L_e ⇆ pEX_ala__L_e 10 3 mole 3600 s
update_arg__L_e
arg__L_e ⇆ pEX_arg__L_e 10 3 mole 3600 s
update_ascb__L_e
ascb__L_e ⇆ pEX_ascb__L_e 10 3 mole 3600 s
update_bilglcur_e
bilglcur_e ⇆ pEX_bilglcur_e 10 3 mole 3600 s
update_ca2_e
ca2_e ⇆ pEX_ca2_e 10 3 mole 3600 s
update_camp_e
camp_e ⇆ pEX_camp_e 10 3 mole 3600 s
update_chol_e
chol_e ⇆ pEX_chol_e 10 3 mole 3600 s
update_cl_e
cl_e ⇆ pEX_cl_e 10 3 mole 3600 s
update_co_e
co_e ⇆ pEX_co_e 10 3 mole 3600 s
update_co2_e
co2_e ⇆ pEX_co2_e 10 3 mole 3600 s
update_cys__L_e
cys__L_e ⇆ pEX_cys__L_e 10 3 mole 3600 s
update_dhdascb_e
dhdascb_e ⇆ pEX_dhdascb_e 10 3 mole 3600 s
update_dopa_e
dopa_e ⇆ pEX_dopa_e 10 3 mole 3600 s
update_etha_e
etha_e ⇆ pEX_etha_e 10 3 mole 3600 s
update_fe2_e
fe2_e ⇆ pEX_fe2_e 10 3 mole 3600 s
update_fru_e
fru_e ⇆ pEX_fru_e 10 3 mole 3600 s
update_fum_e
fum_e ⇆ pEX_fum_e 10 3 mole 3600 s
update_gal_e
gal_e ⇆ pEX_gal_e 10 3 mole 3600 s
update_gam_e
gam_e ⇆ pEX_gam_e 10 3 mole 3600 s
update_glc__D_e
glc__D_e ⇆ pEX_glc__D_e 10 3 mole 3600 s
update_gln__L_e
gln__L_e ⇆ pEX_gln__L_e 10 3 mole 3600 s
update_gluala_e
gluala_e ⇆ pEX_gluala_e 10 3 mole 3600 s
update_gly_e
gly_e ⇆ pEX_gly_e 10 3 mole 3600 s
update_glyc_e
glyc_e ⇆ pEX_glyc_e 10 3 mole 3600 s
update_gthox_e
gthox_e ⇆ pEX_gthox_e 10 3 mole 3600 s
update_h_e
h_e ⇆ pEX_h_e 10 3 mole 3600 s
update_h2o_e
h2o_e ⇆ pEX_h2o_e 10 3 mole 3600 s
update_h2o2_e
h2o2_e ⇆ pEX_h2o2_e 10 3 mole 3600 s
update_hco3_e
hco3_e ⇆ pEX_hco3_e 10 3 mole 3600 s
update_hcys__L_e
hcys__L_e ⇆ pEX_hcys__L_e 10 3 mole 3600 s
update_hdca_e
hdca_e ⇆ pEX_hdca_e 10 3 mole 3600 s
update_hxan_e
hxan_e ⇆ pEX_hxan_e 10 3 mole 3600 s
update_ins_e
ins_e ⇆ pEX_ins_e 10 3 mole 3600 s
update_k_e
k_e ⇆ pEX_k_e 10 3 mole 3600 s
update_lac__D_e
lac__D_e ⇆ pEX_lac__D_e 10 3 mole 3600 s
update_lac__L_e
lac__L_e ⇆ pEX_lac__L_e 10 3 mole 3600 s
update_leuktrA4_e
leuktrA4_e ⇆ pEX_leuktrA4_e 10 3 mole 3600 s
update_leuktrB4_e
leuktrB4_e ⇆ pEX_leuktrB4_e 10 3 mole 3600 s
update_lnlc_e
lnlc_e ⇆ pEX_lnlc_e 10 3 mole 3600 s
update_mal__L_e
mal__L_e ⇆ pEX_mal__L_e 10 3 mole 3600 s
update_man_e
man_e ⇆ pEX_man_e 10 3 mole 3600 s
update_mepi_e
mepi_e ⇆ pEX_mepi_e 10 3 mole 3600 s
update_met__L_e
met__L_e ⇆ pEX_met__L_e 10 3 mole 3600 s
update_na1_e
na1_e ⇆ pEX_na1_e 10 3 mole 3600 s
update_nac_e
nac_e ⇆ pEX_nac_e 10 3 mole 3600 s
update_ncam_e
ncam_e ⇆ pEX_ncam_e 10 3 mole 3600 s
update_nh4_e
nh4_e ⇆ pEX_nh4_e 10 3 mole 3600 s
update_normete__L_e
normete__L_e ⇆ pEX_normete__L_e 10 3 mole 3600 s
update_nrpphr_e
nrpphr_e ⇆ pEX_nrpphr_e 10 3 mole 3600 s
update_o2_e
o2_e ⇆ pEX_o2_e 10 3 mole 3600 s
update_ocdcea_e
ocdcea_e ⇆ pEX_ocdcea_e 10 3 mole 3600 s
update_orot_e
orot_e ⇆ pEX_orot_e 10 3 mole 3600 s
update_phe__L_e
phe__L_e ⇆ pEX_phe__L_e 10 3 mole 3600 s
update_pi_e
pi_e ⇆ pEX_pi_e 10 3 mole 3600 s
update_ptrc_e
ptrc_e ⇆ pEX_ptrc_e 10 3 mole 3600 s
update_pydam_e
pydam_e ⇆ pEX_pydam_e 10 3 mole 3600 s
update_pydx_e
pydx_e ⇆ pEX_pydx_e 10 3 mole 3600 s
update_pydxn_e
pydxn_e ⇆ pEX_pydxn_e 10 3 mole 3600 s
update_pyr_e
pyr_e ⇆ pEX_pyr_e 10 3 mole 3600 s
update_ribflv_e
ribflv_e ⇆ pEX_ribflv_e 10 3 mole 3600 s
update_spmd_e
spmd_e ⇆ pEX_spmd_e 10 3 mole 3600 s
update_sprm_e
sprm_e ⇆ pEX_sprm_e 10 3 mole 3600 s
update_thm_e
thm_e ⇆ pEX_thm_e 10 3 mole 3600 s
update_thmmp_e
thmmp_e ⇆ pEX_thmmp_e 10 3 mole 3600 s
update_urea_e
urea_e ⇆ pEX_urea_e 10 3 mole 3600 s
update_uri_e
uri_e ⇆ pEX_uri_e 10 3 mole 3600 s