Caveats

This is a list of known problems currently in Pycotools

Non-Ascii Characters

  • Non-ascii characters are minimally supported and can break PyCoTools
  • Do not use unusual characters or naming systems (i.e. A reaction name called “A -> B” will break pycotools)

Parameter Estimation

Currently we cannot setup:

  • Affected experiments in parameter estimations

Duplicate Names

In COPASI we can have (say) a global quantity and a metaboltie with the same name because they are different entities. This is not supported in Pycotools and you must use unique names for every model component

Known Bugs

  • viz.PlotTimeCourseEnsembles doesn’t work properly if user is fitting multiple experiments with multiple conditions (i.e. defined by independent variables)