{% extends "layout.html" %} {% block title %} {{ super() }} - {{ institute.display_name }} - Cases {% endblock %} {% block top_nav %} {{ super() }}
  • Institutes
  • {{ institute.display_name }}
  • {% if config.SHOW_CAUSATIVES %}
  • Causatives
  • {% endif %}
  • Clinvar submissions
  • {% endblock %} {% block content_main %}
    {{ search_form() }}
    {% if sanger_unevaluated %} {% endif %} {% for group_name, case_group in cases %} {% if case_group|length > 0 %}
    {{ cases_table(group_name, case_group) }}
    {% endif %} {% endfor %} {% endblock %} {% macro search_form() %}
    {% endmacro %} {% macro cases_table(group_name, cases) %} {% for case in cases %} {{ case_row(case) }} {% else %} {% endfor %}
    {{ group_name|capitalize }} cases Status Analysis date Link Sequencing Clinvar
    No cases found.
    {% endmacro %} {% macro case_row(case) %} {{ case.display_name }} {% if case.individuals|length > 1 %} {% for item in case.individuals %} {% endfor %} {% endif %} {% for user in case.assignees %} {{ user.name }} {% endfor %} {{ case.status }} {% if case.is_migrated %} migrated {% endif %} {{ case.analysis_date.date() }} {% if case.is_rerun %} rerun {% endif %} {% if case.is_research %} {% if case.vcf_files.vcf_snv %} Research SNV and INDELs {% elif case.vcf_files.vcf_cancer %} Clinical cancer variants {% endif %} {% else %} {% if case.vcf_files.vcf_snv %} Clinical SNV and INDELs {% elif case.vcf_files.vcf_cancer %} Clinical cancer variants {% endif %} {% endif %} {% for analysis_type in case.analysis_types %} {% if analysis_type == 'wgs' %} {% set label_class = 'primary' %} {% elif analysis_type == 'wes' %} {% set label_class = 'warning' %} {% elif analysis_type == 'tga' %} {% set label_class = 'info' %} {% else %} {% set label_class = 'default' %} {% endif %} {{ analysis_type|upper }} {% endfor %} {% if case.clinvar_variants %} {{case.clinvar_variants|length}} variants {% endif %} {% endmacro %} {% block scripts %} {{ super() }} {% endblock %}