Analyses#
SHISO is capable of conducting multiple modes of analysis on spatial transcriptomics data.
Function |
Description |
---|---|
Hierarchical clustering: |
Leiden clustering with neighborhood gene or isoform PCA embedding. |
Spatial pattern discovery: |
Discover spatially non-random isoforms; find isoforms that are differentially expressed across 2 user-specified tissue regions. |
Interaction analysis: |
Detect isoform co-interactions and isoform interactions with different cell-types. |